View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0294_low_8 (Length: 296)
Name: NF0294_low_8
Description: NF0294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0294_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 50 - 257
Target Start/End: Original strand, 33854649 - 33854855
Alignment:
| Q |
50 |
ctataagatcatgtatacaaataccaaaaatgagactaataaatgagaactcaaacataatacttcaatcaatcaaacttacttgaacatatgcatcatc |
149 |
Q |
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| T |
33854649 |
ctataagatcatgtatacaaatacaagaaatgagactaataaatgagaactcaaacataatacttcaatcaatcaaacttacttgcacatatgcatcatc |
33854748 |
T |
|
| Q |
150 |
gtaaagtttgtatatcacaccctcatcaacctgtgcctctgtatagtgacatctagctagaataacttcctcttcatcactgttacgcataaaaacagtc |
249 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33854749 |
gtaaagtttgtatatcacaccctcatcgacctgtgcctctgtatagtgacatctagctagaataacttcctcttcatcactgttacgcataaaaacagt- |
33854847 |
T |
|
| Q |
250 |
attaaaca |
257 |
Q |
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|||||||| |
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| T |
33854848 |
attaaaca |
33854855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 28214284 - 28214211
Alignment:
| Q |
157 |
ttgtatatcacaccctcatcaacctgtgcctctgtatagtgacatctagctagaataacttcctcttcatcact |
230 |
Q |
| |
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||||| |||||||| ||||||| | |||||||||||||||||||||||| ||| |||||| ||||||||||| |
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| T |
28214284 |
ttgtagatcacacctccatcaactttggcctctgtatagtgacatctagcttgaagaacttcatcttcatcact |
28214211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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