View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0295-INSERTION-1 (Length: 755)
Name: NF0295-INSERTION-1
Description: NF0295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0295-INSERTION-1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 696; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 696; E-Value: 0
Query Start/End: Original strand, 8 - 755
Target Start/End: Complemental strand, 12097233 - 12096486
Alignment:
| Q |
8 |
gcaaacagagaaaaaccaatcaaaaacagagaaggttctattacaatnnnnnnntgatggtaacttggtagttcttgatggacaaaacaacgaggtttgg |
107 |
Q |
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| T |
12097233 |
gcaaacagagaaaaaccaatcaaaaacagagaaggttctattacaataaaaaaatgatggtaacttggtagttcttgatggacaaaacaacgaggtttgg |
12097134 |
T |
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| Q |
108 |
caagtaatatatcgaaaatttcgataaataattcacaagctgttcttcttaatgatgggaaccttattctttctgatagagaaaataacaaagagatttg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12097133 |
caagtaatatatcgaaaatttcgataaataattcacaagctgttcttcttaatgatgggaaccttattctttctgatagagaaaataacaaagagatttg |
12097034 |
T |
|
| Q |
208 |
gcaaagctttgaagatccaactgatacatatcttccaggtatggaagtttcggcgagtggtggaagtggaattgggaaggatgctactttttgttcatgg |
307 |
Q |
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| T |
12097033 |
gcaaagctttgaagatccaactgatacatatcttccaggtatgaaagtttcggcgagtggtggaagtggaattgggaaggatgctactttttgttcatgg |
12096934 |
T |
|
| Q |
308 |
aaatcagaggaagatccttcatttggaaactatacaatgagtgttgattctgaagcatcaccacatatagtgattatggaaggagagaaaagaaggtgga |
407 |
Q |
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| T |
12096933 |
aaatcagaggaagatccttcatttggaaactatacaatgagtgttgattctgaagcatcaccacatatagtgattatggaaggagagaaaagaaggtgga |
12096834 |
T |
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| Q |
408 |
gaagtggttattggaatggtagagttttcgcaggtgtaccaaatatgaccggaagatatcttttttatatgaagcattggaaaatagggataagatacgg |
507 |
Q |
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| T |
12096833 |
gaagtggttattgggatggtagagttttcacaggtgtgccaaatatgacaggaagatatcttttttatatgaagcattggaaaatagggataagatacgg |
12096734 |
T |
|
| Q |
508 |
tttcagcttgggtatgatggatatgagagacaattcaggtggaatgaagaagagaaagaatgcaatgtgttacaaagtgagcttaataagaagtgtgagt |
607 |
Q |
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| T |
12096733 |
tttcagcttgggtatgatggatatgagagacaattcaggtggaatgaagaagagaaagaatgcaatgtgttacaaagtgagcttaataagaagtgtgagt |
12096634 |
T |
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| Q |
608 |
tttataattcatgtggtagttttgcaatatgtgatatgtctgattcaagtttgtgcaaatgcataaaagggtttgagccaanggatgtcaaaagttggga |
707 |
Q |
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| T |
12096633 |
tttataattcatgtggtagttttgcaatatgtgatatgtctgattcaagtttgtgcaaatgcataaaagggtttgagccaaaggatgtgaaaagttggga |
12096534 |
T |
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| Q |
708 |
gagtgggaattggtcaaaagggtgtaagaggatgattccattgaaggg |
755 |
Q |
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| T |
12096533 |
tagtgggaattggtcaaaagggtgtaagaggatgattccattgaaggg |
12096486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 472
Target Start/End: Original strand, 36288341 - 36288805
Alignment:
| Q |
8 |
gcaaacagagaaaaaccaatcaaaaacagagaaggttctattacaatnnnnnnntgatggtaacttggtagttcttgatggacaaaacaacgaggtttgg |
107 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
36288341 |
gcaaatagagaaaaaccaatcaaaaacagagaaggttttatcacaataaaaaa-tgatggtaacttagttgttcttgatggacaaaacaacgaggtttgg |
36288439 |
T |
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| Q |
108 |
-caagtaatatatcgaaaatttcgataaataattcacaagctgttcttcttaatgatgggaaccttattctttctgatagagaaaataacaaagagattt |
206 |
Q |
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|||| || |||||| ||||||||||||||||||||||||||||||| |||| |||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
36288440 |
tcaagcaacgcatcgaagatttcgataaataattcacaagctgttcttcataataatggaaaccttattctttcagatagagaaaataacaaagagattt |
36288539 |
T |
|
| Q |
207 |
ggcaaagctttgaagatccaactgatacatatcttccaggtatggaagtttcggcgagtggtggaagtggaattgggaaggatgctactttttgttcatg |
306 |
Q |
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| T |
36288540 |
ggcaaagttttgaagatccaactgatacatatcttccaggtatgaaagctccggtgagcggtggaaatggaattgggaaggatgcaactttttgttcatg |
36288639 |
T |
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| Q |
307 |
gaaatcagaggaagatccttcatttggaaactatacaatgagtgttgattctgaagcatcaccacatatagtgattatggaaggagagaaaagaaggtgg |
406 |
Q |
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| T |
36288640 |
gaaatcagagaatgatccttcattaggaaactatacaatgagtgttgattctgaagcatcgccgcagatagtgattatggaaggagagaaaagaaggtgg |
36288739 |
T |
|
| Q |
407 |
agaagtggttattggaatggtagagttttcgcaggtgtaccaaatatgaccggaagatatcttttt |
472 |
Q |
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| T |
36288740 |
agaagtggttattgggatggtagagttttcacaggtgtaccaaatatgacaggaagttatcttttt |
36288805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 468 - 753
Target Start/End: Original strand, 36288844 - 36289129
Alignment:
| Q |
468 |
ttttttatatgaagcattggaaaatagggataagatacggtttcagcttgggtatgatggatatgagagacaattcaggtggaatgaagaagagaaagaa |
567 |
Q |
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|||| |||||||||||||||||||||| |||||| || |||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36288844 |
ttttgtatatgaagcattggaaaatagtgataaggtaaggttccaacttggatatgatggatatgagagacaattcaggtggaatgaagaagagaaagaa |
36288943 |
T |
|
| Q |
568 |
tgcaatgtgttacaaagtgagcttaataagaagtgtgagttttataattcatgtggtagttttgcaatatgtgatatgtctgattcaagtttgtgcaaat |
667 |
Q |
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| T |
36288944 |
tggaatgtgatactaagtgagcctaataagaagtgtgagttttataattcatgtggtagttttgcaatatgtgatatgtctgattcaagtttgtgcaaat |
36289043 |
T |
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| Q |
668 |
gcataaaagggtttgagccaanggatgtcaaaagttgggagagtgggaattggtcaaaagggtgtaagaggatgattccattgaag |
753 |
Q |
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| T |
36289044 |
gcataaaagggtttgaaccaagggatgtgaaaagttggaatagtgggaattggtcaaaagggtgtaagaggatgactccattgaag |
36289129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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