View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0295-INSERTION-10 (Length: 729)
Name: NF0295-INSERTION-10
Description: NF0295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0295-INSERTION-10 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 695; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 695; E-Value: 0
Query Start/End: Original strand, 7 - 729
Target Start/End: Original strand, 43006982 - 43007704
Alignment:
| Q |
7 |
atcgttttcgttagaagtcatcctcactttgtttgcatttaagtgcatgtctccatcaggtaaaccctagctctttctttgttagcctgttaggttagtt |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
43006982 |
atcgttttcgttagaagtcatcctcactttgtttgcatttaagtgcatgtctccatcaggtaaaccctagctctttctttgttagcctgttaggttattt |
43007081 |
T |
|
| Q |
107 |
ttttaccaaagcatgcttattgtgtgtgattggatttttagtaactattatactccttttccaatttcacttacttagctaggatgttgtaacatgtttt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43007082 |
ttttaccaaagcatgcttattgtgtgtgattggacttttagtaactattatactccttttccaatttcacttacttagctaggatgttgtaacatgtttt |
43007181 |
T |
|
| Q |
207 |
gtttctatactattgtcagccatatatctaggtagaggaaatcacgagagcaggagaatgaacaagaaatgtggttttgagggtgaggtgcgctcaaagt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43007182 |
gtttctatactattgtcagccatatatctaggtagaggaaatcacgagagcaggagaatgaacaagaaatgtggttttgagggtgaggtgcgctcaaagt |
43007281 |
T |
|
| Q |
307 |
tgaatggaggatttgtcaaactatttgcggaagtgttctgctgtttacctttggctcatgtgataaacaagaaagttttcgtagtccatggaggtctttt |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43007282 |
tgaatggaggatttgtcaaactatttgcggaagtgttctgctgtttatctttggctcatgtgataaacaagaaagttttcgtagtccatggaggtctttt |
43007381 |
T |
|
| Q |
407 |
tagtgttgatggggtcaaactctccgatatccgatcaattaatcggttttgtgagcctcctgatgaaggtaagacacgtcattattattatttttacttg |
506 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43007382 |
tagtgttgatggggtcaaactctccgatatccgatcaattaatcggttttgtgagcctcctgatgaaggtaagacacgtcattattattatttttacttg |
43007481 |
T |
|
| Q |
507 |
catttcaccataatccttctttgtattgtagttttgtttatttatctatgtttggtatgtgtagggttgatgcatgacttgctatggagtgatccacaat |
606 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43007482 |
catttcagcataatccttctttgtattgtagttttgtttatttatctatgtttggtatgtgtagggttgatgcatgacttgctatggagtgatccacaat |
43007581 |
T |
|
| Q |
607 |
atttccctggaagaggaccaagcaagcgtggttatgaattcttttgttttggtgaggatgttacaaaaaggttcttgaaggataatagtttaggtatgtt |
706 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43007582 |
atctccctggaagaggaccaagcaagcgtggttatgaattattttgttttggtgaggatgttacaaaaaggttcttgaaggataataatttaggtatgtt |
43007681 |
T |
|
| Q |
707 |
ttccattggtctgatacttattt |
729 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
43007682 |
ttccattggtctgatacttattt |
43007704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 119 - 726
Target Start/End: Original strand, 42999750 - 43000364
Alignment:
| Q |
119 |
atgcttattgtgtgtgattggatttttagtaactattatactccttttccaatttcacttacttagctaggatgttgtaacatgttttgtttctatacta |
218 |
Q |
| |
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|||||||||||||||| ||||||||| | || |||||||||||| || | |||||| | |||||| |||||||||||| ||||||| ||||||| || |
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| T |
42999750 |
atgcttattgtgtgtggttggattttcggaaa-tattatactcctcttttcacttcactcagttagctgggatgttgtaacttgttttgcttctatatta |
42999848 |
T |
|
| Q |
219 |
ttgtcagccatatatctaggtagaggaaatcacgagagcaggagaatgaacaagaaatgtggttttgagggtgaggtgcgctcaaagttgaatggaggat |
318 |
Q |
| |
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|| |||||||| ||| ||| |||||||||||| ||||||| ||| |||||||||| || |||||||||||||||||||||| |||||||||||| || |
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| T |
42999849 |
ttctcagccatgtatatagctagaggaaatcatgagagcaagagcatgaacaagatatttggttttgagggtgaggtgcgcgcaaagttgaatgacaaat |
42999948 |
T |
|
| Q |
319 |
ttgtcaaactatttgcggaagtgttctgctgtttacctttggctcatgtgataaacaagaaagttttcgtagtccatggaggtctttttagtgttgatgg |
418 |
Q |
| |
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|||||||| | ||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
42999949 |
ttgtcaaaatgtttgcggaagtattcaactgtttacctttggctcatgtgataaacaaaaaagttttcgtcgtccatggaggtctttttagtgttgatgg |
43000048 |
T |
|
| Q |
419 |
ggtcaaactctccgatatccgatcaattaatcggttttgtgagcctcctgatgaaggtaagacacgtcattattattatttttacttgcatttcaccata |
518 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| || | | ||||| ||||| |||| |||| |
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| T |
43000049 |
ggtcaaactctctcaaatccgatcaattaatcggttttgtgagcctcctgatgaaggtaagacac------ataaattttttttcttgctattcatcata |
43000142 |
T |
|
| Q |
519 |
atc-------cttctttgtattgtagttttgtttatttatc-------tatgtttggtatgtgtagggttgatgcatgacttgctatggagtgatccaca |
604 |
Q |
| |
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||| |||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43000143 |
atccgtaatacttctttgtattgtagttttttttatgtatctatcatgtatgtttggtatgtgtagggttgatgcatgacttgctatggagtgatccaca |
43000242 |
T |
|
| Q |
605 |
atatttccctggaagaggaccaagcaagcgtggttatgaattcttttgttttggtgaggatgttacaaaaaggttcttgaaggataatagtttaggtatg |
704 |
Q |
| |
|
| | ||||||||||||||||||| |||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43000243 |
acctctccctggaagaggaccaagtaagcgtggcaatagatgcttttgttttggtgaggatgttacaaaaaggttcttgaaggataataatttaggtatg |
43000342 |
T |
|
| Q |
705 |
ttttccattggtctgatactta |
726 |
Q |
| |
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||||||||||| |||||||||| |
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| T |
43000343 |
ttttccattgggctgatactta |
43000364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 42999341 - 42999426
Alignment:
| Q |
32 |
actttgtttgcatttaagtgcatgtctccatcaggtaaaccctagctctttctttgttagcctgttaggttagttttttaccaaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||| ||||||||| |||||||||||| |
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| T |
42999341 |
actttgtttgcatttaagtgcatgtctccatctggtaaaccctagttctttctttattagcatgttaggttttctttttaccaaag |
42999426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 5e-98; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 172 - 477
Target Start/End: Original strand, 19316140 - 19316445
Alignment:
| Q |
172 |
ttcacttacttagctaggatgttgtaacatgttttgtttctatactattgtcagccatatatctaggtagaggaaatcacgagagcaggagaatgaacaa |
271 |
Q |
| |
|
|||||| | |||||| ||||| |||||| ||||||||||||||| |||| ||||| |||||||||| |||||||||||| ||||||| ||| |||||||| |
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|
| T |
19316140 |
ttcactcagttagctgggatgctgtaacttgttttgtttctatattattttcagctatatatctagctagaggaaatcatgagagcaagagcatgaacaa |
19316239 |
T |
|
| Q |
272 |
gaaatgtggttttgagggtgaggtgcgctcaaagttgaatggaggatttgtcaaactatttgcggaagtgttctgctgtttacctttggctcatgtgata |
371 |
Q |
| |
|
|| | |||||||||||| |||||||||||||||||||||| | |||||| |||||||||| ||||| |||||||||||||||||||||||||||||| |
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|
| T |
19316240 |
gatttatggttttgagggcgaggtgcgctcaaagttgaatgaaacatttgtagaactatttgcagaagtattctgctgtttacctttggctcatgtgata |
19316339 |
T |
|
| Q |
372 |
aacaagaaagttttcgtagtccatggaggtctttttagtgttgatggggtcaaactctccgatatccgatcaattaatcggttttgtgagcctcctgatg |
471 |
Q |
| |
|
||| |||||||||||||||||||||| |||||||| |||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| || | |
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| T |
19316340 |
aacgagaaagttttcgtagtccatgggggtcttttcagtgttgacggggtcaaactctctgaaatccgatcaattaatcggttttgtgagcctcccgagg |
19316439 |
T |
|
| Q |
472 |
aaggta |
477 |
Q |
| |
|
|||||| |
|
|
| T |
19316440 |
aaggta |
19316445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 535 - 726
Target Start/End: Original strand, 19319504 - 19319692
Alignment:
| Q |
535 |
tagttttgtttatttatctatgtttggtatgtgtagggttgatgcatgacttgctatggagtgatccacaatatttccctggaagaggaccaagcaagcg |
634 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||| |||||| ||| ||||||||||||||||||||| | |||||||||||||||| |||||||| |
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|
| T |
19319504 |
tagttttgtttatgtatatatgtttggtatgtgtaggtttgatgtgtgagttgctatggagtgatccacaacctctccctggaagaggaccgagcaagcg |
19319603 |
T |
|
| Q |
635 |
tggttatgaattcttttgttttggtgaggatgttacaaaaaggttcttgaaggataatagtttaggtatgttttccattggtctgatactta |
726 |
Q |
| |
|
||| || | | ||| |||||||| ||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||| || ||||| |
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|
| T |
19319604 |
tgg---tgtaggcctttcttttggtggggatgttaccaaaaggtttttgaaggataataatttaggtatgttttccattggtccgacactta |
19319692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 19315875 - 19315970
Alignment:
| Q |
7 |
atcgttttcgttagaagtcatcctcactttgtttgcatttaagtgcatgtctccatcaggtaaaccctagctctttctttgttagcctgttaggtt |
102 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
19315875 |
atcgttttctttggaagtcatcctcactttgtttgcatttaagtgcatgtctccatcaggtaaaccctagctctttctttattagcctgttaggtt |
19315970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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