View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0295-INSERTION-13 (Length: 210)
Name: NF0295-INSERTION-13
Description: NF0295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0295-INSERTION-13 |
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| [»] scaffold0929 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: scaffold0929 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 1054 - 852
Alignment:
| Q |
8 |
tcatcacacacataggttataatgagtttgataatttgaattcaatggtttgatcttttgggctataaacctacaacataaactagtcaattattatgtt |
107 |
Q |
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| T |
1054 |
tcatcacacacataggttataatgagtttgataatttgaattcaatggtttgatcttttgggctataaacctacaacataaactagtcaattattatgtt |
955 |
T |
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| Q |
108 |
atgccacacattacaattggacttgtggaatagagcaactcttgtttaaacacaaccctaaataacatttattttgacacatacacataaataatagaaa |
207 |
Q |
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| T |
954 |
atgccacacattacaattggacttgtggaatagagaaactcttgtttaaacacaaccctaaataaaatttattttgacacatacacataaataatagaaa |
855 |
T |
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| Q |
208 |
tta |
210 |
Q |
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||| |
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| T |
854 |
tta |
852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 35 - 210
Target Start/End: Complemental strand, 6370071 - 6369896
Alignment:
| Q |
35 |
ttgataatttgaattcaatggtttgatcttttgggctataaacctacaacataaactagtcaattattatgttatgccacacattacaattggacttgtg |
134 |
Q |
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| T |
6370071 |
ttgataatttgaatgcagtggtttgatcttttgtgctatagacctaaaacataaactagtcaattattatgctatgccacacatttcaattgaacttgtg |
6369972 |
T |
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| Q |
135 |
gaatagagcaactcttgtttaaacacaaccctaaataacatttattttgacacatacacataaataatagaaatta |
210 |
Q |
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| T |
6369971 |
caatagaagaactcttgtttgaacacaatctcaaataaaatttattttgacacatacatataaatgatagaaatta |
6369896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 35 - 210
Target Start/End: Complemental strand, 6378536 - 6378361
Alignment:
| Q |
35 |
ttgataatttgaattcaatggtttgatcttttgggctataaacctacaacataaactagtcaattattatgttatgccacacattacaattggacttgtg |
134 |
Q |
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| T |
6378536 |
ttgataatttgaatgcagtggtttgatcttttgtgctatagacctaaaacataaactagtcaattattatgctatgccacacatttcaattgaacttgtg |
6378437 |
T |
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| Q |
135 |
gaatagagcaactcttgtttaaacacaaccctaaataacatttattttgacacatacacataaataatagaaatta |
210 |
Q |
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| T |
6378436 |
caatagaagaactcttgtttgaacacaatctcaaataaaatttattttgacacatacatataaatgatagaaatta |
6378361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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