View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0295-INSERTION-14 (Length: 352)
Name: NF0295-INSERTION-14
Description: NF0295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0295-INSERTION-14 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 352
Target Start/End: Original strand, 40198194 - 40198533
Alignment:
| Q |
13 |
ggaggaggccatactgatcctcatttcgttgcattgggaggtaagccatataatccgtttaattaaacattatcttttctcttcattttaatatattttg |
112 |
Q |
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| T |
40198194 |
ggaggaggccatactgatcctcatttcgttgcattgggaggtaagccatataatccgtttaattaaacattatcctttctcttcattttaatatattttg |
40198293 |
T |
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| Q |
113 |
ttttcactactcccaggacctgtaatgaacaaatttaccattgctttgagagaaatcactacatacaaggaacttcttcgctcacaggtaatcattatct |
212 |
Q |
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| T |
40198294 |
ttttcactactcccaggacctgtaatgaacaaatttaccattgctttgagagaaatcactacatacaaggaacttcttcgctcacaggtaatcattatct |
40198393 |
T |
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| Q |
213 |
attcaagttttatttctcaattgatattgctatgctgactgtacttaatatggcttcttaggtagaccacatgattgatgaccgcctattacaaattgtc |
312 |
Q |
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| T |
40198394 |
attgaacttttatttctcaattgatattgctatgctgactgtacttaatatggcttcttaggtagaccacatgattgatgaccgcctattacaaattgtc |
40198493 |
T |
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| Q |
313 |
catgttgacatcaatgaagtcaaggtatgcttttatatgg |
352 |
Q |
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| T |
40198494 |
aatgttgacatcaatgaagtcaaggtatgcttttagatgg |
40198533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 45083905 - 45083984
Alignment:
| Q |
125 |
ccaggacctgtaatgaacaaatttaccattgctttgagagaaatcactacatacaaggaacttcttcgctcacaggtaat |
204 |
Q |
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| T |
45083905 |
ccaggacctgtaatggccaaattctctattgctttgagagaaatcagtacacacaaggaacttcttcgttcacaggtaat |
45083984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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