View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0295-INSERTION-2 (Length: 672)
Name: NF0295-INSERTION-2
Description: NF0295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0295-INSERTION-2 |
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Alignment Details
Target: chr5 (Bit Score: 578; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 8 - 656
Target Start/End: Original strand, 33015385 - 33016036
Alignment:
Q |
8 |
gttcttgcatcaccattcttctctgttgcaacttcaac---gtgtgaacttgttttcaatggaggagttacaggtgttacaccgggccatcctggaatgc |
104 |
Q |
|
|
|||||||||||||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
33015385 |
gttcttgcatcaccattcttctttgttgcaacctcaactacgcgtgaacttgttttcaatggaggagttacaggtgttacaccgggccatcctggaatgc |
33015484 |
T |
 |
Q |
105 |
ctggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtagttgcatcgtcattcttctttgtagcaacctc |
204 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
T |
33015485 |
ctggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtacttgcatcgtcattcttctttgtagcaacctc |
33015584 |
T |
 |
Q |
205 |
aactacatgtgaacttgtttttaatggaggagttacaggtgttacaccgggccatccaggaatgcccggaataccaggccatgttggtaggcctggaaca |
304 |
Q |
|
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
T |
33015585 |
aactgcatgtgaacttgtttttaatggaggagttataggtgttacaccgggccatccaggaatgcccgaaataccaggccatgttggtaggcctggaaca |
33015684 |
T |
 |
Q |
305 |
ccgggaaatccaggtatattgaagcaatctgtacttgcatcgccattctgctttgtagcaacctcaactgcacgtgaacttgtttttaatggaggagtta |
404 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
33015685 |
ccgggaaatccaggtatattgaagcaatctgtacttgcatcgccattctgctttgtagcaacctcaactgcacgtgaacttgtttttaatggaggagtta |
33015784 |
T |
 |
Q |
405 |
caggtgttacaccgggccatcctggaatgcctggaataccgggccatgtcggtaggcctggaataccgggccaggtcggtaggcctggaacaccaggaag |
504 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| |
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|
T |
33015785 |
caggtgttacaccgggccatcctggaatgcctggaataccgggccatgtcggtaggcctggaataccgggccatgttggtaggcctggaacaccgggaag |
33015884 |
T |
 |
Q |
505 |
tccaggtatattgaagcaatccgaacttacatcattttgctttgtctcaactgcaaaaataagaggcataatcatatcaaattacacatattttacatca |
604 |
Q |
|
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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|
T |
33015885 |
tccaggtatattgaaacaatccgaacttgcatcattttgctttgtctcaactgcaaaaataagagccataatcatatcaaattacacatattttccatca |
33015984 |
T |
 |
Q |
605 |
aaattttcttgaaattagtaatttaagaataatgaacataaacttcacaaat |
656 |
Q |
|
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
T |
33015985 |
aaattttcttgaaattagtaatttaagaatagtgaacataaacttcacaaat |
33016036 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 8 - 656
Target Start/End: Original strand, 33003845 - 33004496
Alignment:
Q |
8 |
gttcttgcatcaccattcttctctgttgcaacttcaac---gtgtgaacttgttttcaatggaggagttacaggtgttacaccgggccatcctggaatgc |
104 |
Q |
|
|
|||||||||||||||||||||| |||||||| ||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
33003845 |
gttcttgcatcaccattcttctttgttgcaatctcaactatgcgcgaacttgttttcaatggaggagttacaggtgttacaccgggccatcctggaatgc |
33003944 |
T |
 |
Q |
105 |
ctggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtagttgcatcgtcattcttctttgtagcaacctc |
204 |
Q |
|
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
T |
33003945 |
ctggaataccgggccaagttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtacttgcatcgtcattcttctttgtagcaacctc |
33004044 |
T |
 |
Q |
205 |
aactacatgtgaacttgtttttaatggaggagttacaggtgttacaccgggccatccaggaatgcccggaataccaggccatgttggtaggcctggaaca |
304 |
Q |
|
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
T |
33004045 |
aactgcatgtgaacttgtttttaatggaggagttacaggtgttacaccgggccatccaggaatgcccgaaataccaggccatgttggtaggcctggaaca |
33004144 |
T |
 |
Q |
305 |
ccgggaaatccaggtatattgaagcaatctgtacttgcatcgccattctgctttgtagcaacctcaactgcacgtgaacttgtttttaatggaggagtta |
404 |
Q |
|
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
T |
33004145 |
ccgggaaatccaggtatattgaagcaatctgtacttggatcgccattctgctttgtagcaaccttaactgcacgtgaacttgtttttaatggaggagtta |
33004244 |
T |
 |
Q |
405 |
caggtgttacaccgggccatcctggaatgcctggaataccgggccatgtcggtaggcctggaataccgggccaggtcggtaggcctggaacaccaggaag |
504 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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T |
33004245 |
caggtgttacaccgggccatcctggaatgcctggaataccgggccatgtcggtaggcctggaataccgggccatgtcggtaggcctggaacaccgggaag |
33004344 |
T |
 |
Q |
505 |
tccaggtatattgaagcaatccgaacttacatcattttgctttgtctcaactgcaaaaataagaggcataatcatatcaaattacacatattttacatca |
604 |
Q |
|
|
||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
T |
33004345 |
tccaggtatattgaaacaatccgaacttgcatcattttgctttgtctcagctgcaaaaataagagccataatcatatcaaattacacatattttccatca |
33004444 |
T |
 |
Q |
605 |
aaattttcttgaaattagtaatttaagaataatgaacataaacttcacaaat |
656 |
Q |
|
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
T |
33004445 |
aaattttcttgaaattagtaatttaagaatagtgaacataaacttcacaaat |
33004496 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 86 - 474
Target Start/End: Original strand, 33015301 - 33015689
Alignment:
Q |
86 |
ccgggccatcctggaatgcctggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtagttgcatcgtcat |
185 |
Q |
|
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
T |
33015301 |
ccgggccatcctggaatgccgggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatcaccat |
33015400 |
T |
 |
Q |
186 |
tcttctttgtagcaacctcaactacatgtgaacttgtttttaatggaggagttacaggtgttacaccgggccatccaggaatgcccggaataccaggcca |
285 |
Q |
|
|
|||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |
|
|
T |
33015401 |
tcttctttgttgcaacctcaactacgcgtgaacttgttttcaatggaggagttacaggtgttacaccgggccatcctggaatgcctggaataccgggcca |
33015500 |
T |
 |
Q |
286 |
tgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtacttgcatcgccattctgctttgtagcaacctcaactgcacgtgaactt |
385 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||| |
|
|
T |
33015501 |
tgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtacttgcatcgtcattcttctttgtagcaacctcaactgcatgtgaactt |
33015600 |
T |
 |
Q |
386 |
gtttttaatggaggagttacaggtgttacaccgggccatcctggaatgcctggaataccgggccatgtcggtaggcctggaataccggg |
474 |
Q |
|
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||||||||||||||||||| ||||||||||||||||||||| |||||||| | |||||| |||||||| ||||||||||||| |||||| |
|
|
T |
33015601 |
gtttttaatggaggagttataggtgttacaccgggccatccaggaatgcccgaaataccaggccatgttggtaggcctggaacaccggg |
33015689 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 86 - 474
Target Start/End: Original strand, 33003761 - 33004149
Alignment:
Q |
86 |
ccgggccatcctggaatgcctggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtagttgcatcgtcat |
185 |
Q |
|
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
T |
33003761 |
ccgggccatcctggaatgccgggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatcaccat |
33003860 |
T |
 |
Q |
186 |
tcttctttgtagcaacctcaactacatgtgaacttgtttttaatggaggagttacaggtgttacaccgggccatccaggaatgcccggaataccaggcca |
285 |
Q |
|
|
|||||||||| |||| |||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |
|
|
T |
33003861 |
tcttctttgttgcaatctcaactatgcgcgaacttgttttcaatggaggagttacaggtgttacaccgggccatcctggaatgcctggaataccgggcca |
33003960 |
T |
 |
Q |
286 |
tgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtacttgcatcgccattctgctttgtagcaacctcaactgcacgtgaactt |
385 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||| |
|
|
T |
33003961 |
agttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtacttgcatcgtcattcttctttgtagcaacctcaactgcatgtgaactt |
33004060 |
T |
 |
Q |
386 |
gtttttaatggaggagttacaggtgttacaccgggccatcctggaatgcctggaataccgggccatgtcggtaggcctggaataccggg |
474 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||| |||||||| ||||||||||||| |||||| |
|
|
T |
33004061 |
gtttttaatggaggagttacaggtgttacaccgggccatccaggaatgcccgaaataccaggccatgttggtaggcctggaacaccggg |
33004149 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 533 - 654
Target Start/End: Original strand, 32999799 - 32999920
Alignment:
Q |
533 |
acatcattttgctttgtctcaactgcaaaaataagaggcataatcatatcaaattacacatattttacatcaaaattttcttgaaattagtaatttaaga |
632 |
Q |
|
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||||||||| ||||||| |||||| ||||||| || |||| ||| || |||||||||||||||| |||||| ||| ||| |||||||||||||| || |
|
|
T |
32999799 |
acatcatttcgctttgtttcaactacaaaaatgtgaatcatattcaaataaaattacacatattttgtatcaaagtttccttaaaattagtaatttagga |
32999898 |
T |
 |
Q |
633 |
ataatgaacataaacttcacaa |
654 |
Q |
|
|
||||||| || ||||||||||| |
|
|
T |
32999899 |
ataatgagcacaaacttcacaa |
32999920 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 464 - 525
Target Start/End: Original strand, 33003782 - 33003843
Alignment:
Q |
464 |
ggaataccgggccaggtcggtaggcctggaacaccaggaagtccaggtatattgaagcaatc |
525 |
Q |
|
|
|||||||||||||| || ||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
T |
33003782 |
ggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatc |
33003843 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 464 - 525
Target Start/End: Original strand, 33015322 - 33015383
Alignment:
Q |
464 |
ggaataccgggccaggtcggtaggcctggaacaccaggaagtccaggtatattgaagcaatc |
525 |
Q |
|
|
|||||||||||||| || ||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
T |
33015322 |
ggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatc |
33015383 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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