View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0295-INSERTION-2 (Length: 672)

Name: NF0295-INSERTION-2
Description: NF0295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0295-INSERTION-2
NF0295-INSERTION-2
[»] chr5 (7 HSPs)
chr5 (8-656)||(33015385-33016036)
chr5 (8-656)||(33003845-33004496)
chr5 (86-474)||(33015301-33015689)
chr5 (86-474)||(33003761-33004149)
chr5 (533-654)||(32999799-32999920)
chr5 (464-525)||(33003782-33003843)
chr5 (464-525)||(33015322-33015383)


Alignment Details
Target: chr5 (Bit Score: 578; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 8 - 656
Target Start/End: Original strand, 33015385 - 33016036
Alignment:
8 gttcttgcatcaccattcttctctgttgcaacttcaac---gtgtgaacttgttttcaatggaggagttacaggtgttacaccgggccatcctggaatgc 104  Q
    |||||||||||||||||||||| ||||||||| |||||   | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33015385 gttcttgcatcaccattcttctttgttgcaacctcaactacgcgtgaacttgttttcaatggaggagttacaggtgttacaccgggccatcctggaatgc 33015484  T
105 ctggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtagttgcatcgtcattcttctttgtagcaacctc 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
33015485 ctggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtacttgcatcgtcattcttctttgtagcaacctc 33015584  T
205 aactacatgtgaacttgtttttaatggaggagttacaggtgttacaccgggccatccaggaatgcccggaataccaggccatgttggtaggcctggaaca 304  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
33015585 aactgcatgtgaacttgtttttaatggaggagttataggtgttacaccgggccatccaggaatgcccgaaataccaggccatgttggtaggcctggaaca 33015684  T
305 ccgggaaatccaggtatattgaagcaatctgtacttgcatcgccattctgctttgtagcaacctcaactgcacgtgaacttgtttttaatggaggagtta 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33015685 ccgggaaatccaggtatattgaagcaatctgtacttgcatcgccattctgctttgtagcaacctcaactgcacgtgaacttgtttttaatggaggagtta 33015784  T
405 caggtgttacaccgggccatcctggaatgcctggaataccgggccatgtcggtaggcctggaataccgggccaggtcggtaggcctggaacaccaggaag 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||    
33015785 caggtgttacaccgggccatcctggaatgcctggaataccgggccatgtcggtaggcctggaataccgggccatgttggtaggcctggaacaccgggaag 33015884  T
505 tccaggtatattgaagcaatccgaacttacatcattttgctttgtctcaactgcaaaaataagaggcataatcatatcaaattacacatattttacatca 604  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
33015885 tccaggtatattgaaacaatccgaacttgcatcattttgctttgtctcaactgcaaaaataagagccataatcatatcaaattacacatattttccatca 33015984  T
605 aaattttcttgaaattagtaatttaagaataatgaacataaacttcacaaat 656  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
33015985 aaattttcttgaaattagtaatttaagaatagtgaacataaacttcacaaat 33016036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 8 - 656
Target Start/End: Original strand, 33003845 - 33004496
Alignment:
8 gttcttgcatcaccattcttctctgttgcaacttcaac---gtgtgaacttgttttcaatggaggagttacaggtgttacaccgggccatcctggaatgc 104  Q
    |||||||||||||||||||||| ||||||||  |||||   | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33003845 gttcttgcatcaccattcttctttgttgcaatctcaactatgcgcgaacttgttttcaatggaggagttacaggtgttacaccgggccatcctggaatgc 33003944  T
105 ctggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtagttgcatcgtcattcttctttgtagcaacctc 204  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
33003945 ctggaataccgggccaagttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtacttgcatcgtcattcttctttgtagcaacctc 33004044  T
205 aactacatgtgaacttgtttttaatggaggagttacaggtgttacaccgggccatccaggaatgcccggaataccaggccatgttggtaggcctggaaca 304  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
33004045 aactgcatgtgaacttgtttttaatggaggagttacaggtgttacaccgggccatccaggaatgcccgaaataccaggccatgttggtaggcctggaaca 33004144  T
305 ccgggaaatccaggtatattgaagcaatctgtacttgcatcgccattctgctttgtagcaacctcaactgcacgtgaacttgtttttaatggaggagtta 404  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
33004145 ccgggaaatccaggtatattgaagcaatctgtacttggatcgccattctgctttgtagcaaccttaactgcacgtgaacttgtttttaatggaggagtta 33004244  T
405 caggtgttacaccgggccatcctggaatgcctggaataccgggccatgtcggtaggcctggaataccgggccaggtcggtaggcctggaacaccaggaag 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
33004245 caggtgttacaccgggccatcctggaatgcctggaataccgggccatgtcggtaggcctggaataccgggccatgtcggtaggcctggaacaccgggaag 33004344  T
505 tccaggtatattgaagcaatccgaacttacatcattttgctttgtctcaactgcaaaaataagaggcataatcatatcaaattacacatattttacatca 604  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||    
33004345 tccaggtatattgaaacaatccgaacttgcatcattttgctttgtctcagctgcaaaaataagagccataatcatatcaaattacacatattttccatca 33004444  T
605 aaattttcttgaaattagtaatttaagaataatgaacataaacttcacaaat 656  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
33004445 aaattttcttgaaattagtaatttaagaatagtgaacataaacttcacaaat 33004496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 86 - 474
Target Start/End: Original strand, 33015301 - 33015689
Alignment:
86 ccgggccatcctggaatgcctggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtagttgcatcgtcat 185  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||  |||    
33015301 ccgggccatcctggaatgccgggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatcaccat 33015400  T
186 tcttctttgtagcaacctcaactacatgtgaacttgtttttaatggaggagttacaggtgttacaccgggccatccaggaatgcccggaataccaggcca 285  Q
    |||||||||| ||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||    
33015401 tcttctttgttgcaacctcaactacgcgtgaacttgttttcaatggaggagttacaggtgttacaccgggccatcctggaatgcctggaataccgggcca 33015500  T
286 tgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtacttgcatcgccattctgctttgtagcaacctcaactgcacgtgaactt 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||    
33015501 tgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtacttgcatcgtcattcttctttgtagcaacctcaactgcatgtgaactt 33015600  T
386 gtttttaatggaggagttacaggtgttacaccgggccatcctggaatgcctggaataccgggccatgtcggtaggcctggaataccggg 474  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||| | |||||| |||||||| ||||||||||||| ||||||    
33015601 gtttttaatggaggagttataggtgttacaccgggccatccaggaatgcccgaaataccaggccatgttggtaggcctggaacaccggg 33015689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 86 - 474
Target Start/End: Original strand, 33003761 - 33004149
Alignment:
86 ccgggccatcctggaatgcctggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtagttgcatcgtcat 185  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||  |||    
33003761 ccgggccatcctggaatgccgggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatcaccat 33003860  T
186 tcttctttgtagcaacctcaactacatgtgaacttgtttttaatggaggagttacaggtgttacaccgggccatccaggaatgcccggaataccaggcca 285  Q
    |||||||||| |||| ||||||||   | ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||    
33003861 tcttctttgttgcaatctcaactatgcgcgaacttgttttcaatggaggagttacaggtgttacaccgggccatcctggaatgcctggaataccgggcca 33003960  T
286 tgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtacttgcatcgccattctgctttgtagcaacctcaactgcacgtgaactt 385  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||    
33003961 agttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtacttgcatcgtcattcttctttgtagcaacctcaactgcatgtgaactt 33004060  T
386 gtttttaatggaggagttacaggtgttacaccgggccatcctggaatgcctggaataccgggccatgtcggtaggcctggaataccggg 474  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||| |||||||| ||||||||||||| ||||||    
33004061 gtttttaatggaggagttacaggtgttacaccgggccatccaggaatgcccgaaataccaggccatgttggtaggcctggaacaccggg 33004149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 533 - 654
Target Start/End: Original strand, 32999799 - 32999920
Alignment:
533 acatcattttgctttgtctcaactgcaaaaataagaggcataatcatatcaaattacacatattttacatcaaaattttcttgaaattagtaatttaaga 632  Q
    ||||||||| ||||||| |||||| |||||||  ||  |||| ||| || ||||||||||||||||  |||||| ||| ||| |||||||||||||| ||    
32999799 acatcatttcgctttgtttcaactacaaaaatgtgaatcatattcaaataaaattacacatattttgtatcaaagtttccttaaaattagtaatttagga 32999898  T
633 ataatgaacataaacttcacaa 654  Q
    ||||||| || |||||||||||    
32999899 ataatgagcacaaacttcacaa 32999920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 464 - 525
Target Start/End: Original strand, 33003782 - 33003843
Alignment:
464 ggaataccgggccaggtcggtaggcctggaacaccaggaagtccaggtatattgaagcaatc 525  Q
    |||||||||||||| || ||||||||||||||||| |||| |||||||||||||||||||||    
33003782 ggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatc 33003843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 464 - 525
Target Start/End: Original strand, 33015322 - 33015383
Alignment:
464 ggaataccgggccaggtcggtaggcctggaacaccaggaagtccaggtatattgaagcaatc 525  Q
    |||||||||||||| || ||||||||||||||||| |||| |||||||||||||||||||||    
33015322 ggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatc 33015383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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