View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0295-INSERTION-3 (Length: 493)
Name: NF0295-INSERTION-3
Description: NF0295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0295-INSERTION-3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 7 - 480
Target Start/End: Original strand, 33177994 - 33178466
Alignment:
| Q |
7 |
acacattttaggaagagatttattcaactcatgtccatagtgacactaagtttgatgctgaatatcttttcaacattgctgggaacattcttacacgttc |
106 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
33177994 |
acacatttt-ggaagagatttattcaactcatgtccatagtgacactaagtttgatgctgaatatcttttcaacattgctggcaacatccttacacgttc |
33178092 |
T |
|
| Q |
107 |
aacccatgttgttgataactttgtgcaagtatgtgtatatttgcatctatctctccattctttttattatatagtatactgcttctaactaaataatgtt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33178093 |
aacccatgttgttgataactttgtgcaagtatgtgtatatttgcatctatctctccattctttttattatatagtatactgcttctaactaaataatgtt |
33178192 |
T |
|
| Q |
207 |
aacttgtttgtttattacgtagggacatgaatatcaagcaagtgtggagcaattggacaacattaatccccctgctaacttcacttcaccgctgtgtact |
306 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33178193 |
aacttgtttgttta-tacgtagggacatgaatatcaagcaagtgtggagcaattggacaacattaatccccctgctaacttcacttcaccgctgtgtact |
33178291 |
T |
|
| Q |
307 |
ttgaagaaaatcaattctgaggtctttatcttaatatttcatttccatatgctagttaaaagtttagaaaagt----agaaagnnnnnnnnngttagggc |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
33178292 |
ttgaagaaaatcaattctgaggtctttatcttaatatttcatttccatatgctagctaaaagtttagaaaagtataaagaaaaaaaaaaaaagttagggc |
33178391 |
T |
|
| Q |
403 |
aaacagtacctaagtacgtatatatattccaagattaagctcttcaaagcgtgctcgatatttttaagtaatattytt |
480 |
Q |
| |
|
|||||||| ||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| ||||| || |
|
|
| T |
33178392 |
aaacagta-ctaagtacg--tatatatcccaagattaagctcttcaaagcgtactcgatatttttaagttatattttt |
33178466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 360
Target Start/End: Original strand, 33155206 - 33155550
Alignment:
| Q |
7 |
acacattttaggaagagatttattcaactcatgtccatagtgacactaagtttgatgctgaatatcttttcaacattgctgggaacattcttacacgttc |
106 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
33155206 |
acacatttt-ggaagagatttattcaactcatgtccatagtgacactaagtttgatgctgaatatcttttcaacattgctggcaacatccttacacgttc |
33155304 |
T |
|
| Q |
107 |
aacccatgttgttgataactttgtgcaagtatgtgtatatttgcatctatctctccattctttttattatatagtatactgcttctaactaaataatgtt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |||| | ||| || || |||| ||||||||||||| || | ||||||||| |
|
|
| T |
33155305 |
aacccatgttgttgataactttgtgcaagtatgtatatatttgcacctattt----att-ttctttttatgtagtatactgcttttagttgaataatgtt |
33155399 |
T |
|
| Q |
207 |
aacttgtttgtttattacgtagggacatgaatatcaagcaagtgtggagcaattggacaacattaatccccctgctaacttcacttcaccgctgtgtact |
306 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| | ||| ||||| ||||||| || || |||||||| |||||||| | ||||||||||||| |||||||| |
|
|
| T |
33155400 |
aacttgtttgattattac--agggacatgaacaacaaacaagtctggagcagttagataacattaacccccctgccagcttcacttcaccgttgtgtact |
33155497 |
T |
|
| Q |
307 |
ttgaagaaaatcaattctgaggtctttatcttaatatttcatttccatatgcta |
360 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||| ||||||||| |
|
|
| T |
33155498 |
ttgaagaaaatcaattctgaggtc-ttattttaatatttcattttcatatgcta |
33155550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 33137417 - 33137549
Alignment:
| Q |
7 |
acacattttaggaagagatttattcaactcatgtccatagtgacactaagtttgatgctgaatatcttttcaacattgctgggaacattcttacacgttc |
106 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33137417 |
acacatttt-ggaagagatttatgtaactcatgtccatagtgacactaagtttgatgctgaatctcttttcaacattgctgggaacatccttacacgttc |
33137515 |
T |
|
| Q |
107 |
aacccatgttgttgataactttgtgcaagtatgt |
140 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| |
|
|
| T |
33137516 |
aacccatgttgttgataacgttctgcaagtatgt |
33137549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 21 - 139
Target Start/End: Complemental strand, 33290478 - 33290360
Alignment:
| Q |
21 |
gagatttattcaactcatgtccatagtgacactaagtttgatgctgaatatcttttcaacattgctgggaacattcttacacgttcaacccatgttgttg |
120 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||| ||||| ||||||||||||||||| |||||||||| ||||||||| || |||||| |
|
|
| T |
33290478 |
gagatttattcaacccatgtccatagtgacaccaagtttgatgttgaatctcttttcaacattgctgcaaacattcttaggcgttcaacctatattgttg |
33290379 |
T |
|
| Q |
121 |
ataactttgtgcaagtatg |
139 |
Q |
| |
|
| ||| ||||||||||||| |
|
|
| T |
33290378 |
aaaacgttgtgcaagtatg |
33290360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 251 - 350
Target Start/End: Complemental strand, 33290153 - 33290054
Alignment:
| Q |
251 |
tggagcaattggacaacattaatccccctgctaacttcacttcaccgctgtgtactttgaagaaaatcaattctgaggtctttatcttaatatttcattt |
350 |
Q |
| |
|
|||||| |||||| |||| |||||||||||| ||||||| ||||| |||||| |||||||||||| ||||||||||||||||| ||||||||| |||| |
|
|
| T |
33290153 |
tggagccattggataacacacatccccctgctagcttcactccaccgttgtgtattttgaagaaaattaattctgaggtctttattttaatattttattt |
33290054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 317
Target Start/End: Original strand, 33137721 - 33137787
Alignment:
| Q |
251 |
tggagcaattggacaacattaatccccctgctaacttcacttcaccgctgtgtactttgaagaaaat |
317 |
Q |
| |
|
||||||| |||| || |||||||| || |||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
33137721 |
tggagcacctggataatattaatccaccagctagcttcacttcaccgctgtgtactttgaagcaaat |
33137787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 6679771 - 6679887
Alignment:
| Q |
7 |
acacattttaggaagagatttattcaactcatgtccatagtgacactaagtttgatgctgaatatcttttcaacattgctgggaacattcttacacgttc |
106 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||| ||||| ||| ||||| |
|
|
| T |
6679771 |
acacatttt-ggaagagatttattcaactcatgtctatagtgatactaagtttgatgctgaatatattttcaacattgctggaaacatccttgtgcgttc |
6679869 |
T |
|
| Q |
107 |
aacccatgttgttgataa |
124 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
6679870 |
aatccatgttgttgataa |
6679887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 55125063 - 55124991
Alignment:
| Q |
19 |
aagagatttattcaactcatgtccatagtgacactaagtttgatgctgaatatcttttcaacattgctgggaacat |
94 |
Q |
| |
|
||||||||||||||||| ||||| ||||| |||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
55125063 |
aagagatttattcaact---gtccacagtgatgctaagtttgacgctgaatatcttttcaacattgctggaaacat |
55124991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 242 times since January 2019
Visitors: 2563