View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0295-INSERTION-7 (Length: 728)
Name: NF0295-INSERTION-7
Description: NF0295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0295-INSERTION-7 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 661; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 6 - 728
Target Start/End: Complemental strand, 8740922 - 8740199
Alignment:
| Q |
6 |
cacatatcccatttgcttaatcatttccagttatagttgaaccttgttgtaaatctgaatacactctggatgattgctttcaccagaagaaaagacgtgg |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8740922 |
cacatatcccatttgcttaatcatttccagttatagttgaaccttgttctaaatctgaatacactctggatgattgctttcaccagaagaaaagacgtgg |
8740823 |
T |
|
| Q |
106 |
acagcttttcttatctccagtcaactcactctagcttgcttcttaacatatatttccctcatcattttcctaatcgtcgtgacaccgtcccagatacatg |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8740822 |
acagcttttcttatctccagtcaactcactctagcttgcttcttaacatatatttccctcatcattttcctaatcgtcgtgacaccatcccagatacatg |
8740723 |
T |
|
| Q |
206 |
ccttagcatatatattcaatagcaacgcatctgtccccacgtcacaagggtccatagtttctgcaatttgtttccccaagctaaaatttgataaacattg |
305 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8740722 |
ccttagcatatatattcaatagcaacgcatatgtccccatgtcacaagggtccatagtttctgcaatttgtttccccaagctaaaatttgataaacattg |
8740623 |
T |
|
| Q |
306 |
catgcgttaagcgaaactcatcaggaaacaacgtcccatttcagttgtgttgtcttcatgaagttctcagcctcatcaagcagaccggctctgtacaaaa |
405 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8740622 |
catgcgttaagcaaaactcatcaggaaacaacgtcccatttcacttgtgttgtcttcatgaagttctcagcctcatcaagcagaccgtctctgtacaaaa |
8740523 |
T |
|
| Q |
406 |
ccgcaactacacaggcggtgtgttctaatcctggttcaagtcataatatctccatacatcatatcaaagaacatattacatgaagaatcaacgatgccgc |
505 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8740522 |
ccgcaactacacaggcgatgtgttctaatcctggttcaagtcataatatctccatacatcatatcaaagaacatattacatgaagaatcaatgatgccg- |
8740424 |
T |
|
| Q |
506 |
tcttggaatacatatttatcaaaccattcccgacaataacacgattcttaaaaactaacttctcaacccgggcctgcaatagatcaccatgtctaagtgc |
605 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8740423 |
-cttggaatacatatttatcaaaccattcccgacaataacacgattcttaaaacctaacttctcaacccgggcctgcaatagatcaccatgtctaagtgc |
8740325 |
T |
|
| Q |
606 |
tgctatacctgcacaagcattaagcaaaaccacaaaactgaattcgatggccatagtaccttcttgatc---aatgcacgtaagcagattcatagtctcc |
702 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8740324 |
tgctatacctgcacaagcattaagcaaaaccacaaaactgaattcgatggccatagtaccttcttgatccataatgcacgtaagcagattcatagtctcc |
8740225 |
T |
|
| Q |
703 |
tcaaaatctccattccgcaagtcatg |
728 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
8740224 |
tcaaaatctccattccgcaagtcatg |
8740199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 661; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 6 - 728
Target Start/End: Original strand, 10479923 - 10480646
Alignment:
| Q |
6 |
cacatatcccatttgcttaatcatttccagttatagttgaaccttgttgtaaatctgaatacactctggatgattgctttcaccagaagaaaagacgtgg |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10479923 |
cacatatcccatttgcttaatcatttccagttatagttgaaccttgttctaaatctgaatacactctggatgattgctttcaccagaagaaaagacgtgg |
10480022 |
T |
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| Q |
106 |
acagcttttcttatctccagtcaactcactctagcttgcttcttaacatatatttccctcatcattttcctaatcgtcgtgacaccgtcccagatacatg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10480023 |
acagcttttcttatctccagtcaactcactctagcttgcttcttaacatatatttccctcatcattttcctaatcgtcgtgacaccatcccagatacatg |
10480122 |
T |
|
| Q |
206 |
ccttagcatatatattcaatagcaacgcatctgtccccacgtcacaagggtccatagtttctgcaatttgtttccccaagctaaaatttgataaacattg |
305 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10480123 |
ccttagcatatatattcaatagcaacgcatatgtccccatgtcacaagggtccatagtttctgcaatttgtttccccaagctaaaatttgataaacattg |
10480222 |
T |
|
| Q |
306 |
catgcgttaagcgaaactcatcaggaaacaacgtcccatttcagttgtgttgtcttcatgaagttctcagcctcatcaagcagaccggctctgtacaaaa |
405 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
10480223 |
catgcgttaagcaaaactcatcaggaaacaacgtcccatttcacttgtgttgtcttcatgaagttctcagcctcatcaagcagaccgtctctgtacaaaa |
10480322 |
T |
|
| Q |
406 |
ccgcaactacacaggcggtgtgttctaatcctggttcaagtcataatatctccatacatcatatcaaagaacatattacatgaagaatcaacgatgccgc |
505 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10480323 |
ccgcaactacacaggcgatgtgttctaatcctggttcaagtcataatatctccatacatcatatcaaagaacatattacatgaagaatcaatgatgccg- |
10480421 |
T |
|
| Q |
506 |
tcttggaatacatatttatcaaaccattcccgacaataacacgattcttaaaaactaacttctcaacccgggcctgcaatagatcaccatgtctaagtgc |
605 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10480422 |
-cttggaatacatatttatcaaaccattcccgacaataacacgattcttaaaacctaacttctcaacccgggcctgcaatagatcaccatgtctaagtgc |
10480520 |
T |
|
| Q |
606 |
tgctatacctgcacaagcattaagcaaaaccacaaaactgaattcgatggccatagtaccttcttgatc---aatgcacgtaagcagattcatagtctcc |
702 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10480521 |
tgctatacctgcacaagcattaagcaaaaccacaaaactgaattcgatggccatagtaccttcttgatccataatgcacgtaagcagattcatagtctcc |
10480620 |
T |
|
| Q |
703 |
tcaaaatctccattccgcaagtcatg |
728 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
10480621 |
tcaaaatctccattccgcaagtcatg |
10480646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 4e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 6 - 420
Target Start/End: Original strand, 2859231 - 2859655
Alignment:
| Q |
6 |
cacatatcccatttgcttaatcatttccagttatagttgaaccttgttgtaaatctgaatacactctggatgattgctttcaccagaagaaaagacgtgg |
105 |
Q |
| |
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|||||| |||| |||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||| || | ||||||||||||||| |
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| T |
2859231 |
cacataccccagttgcttaatcatttccagcaatagctgaaccttgttgtaaatttgaatacactctggatgattgcttccatctgaagaaaagacgtgg |
2859330 |
T |
|
| Q |
106 |
acagcttttcttatctccagtcaactcactctagcttgcttcttaacatatatttccctcatcattttcctaatcgtcgtgacaccgtcccagatacatg |
205 |
Q |
| |
|
|| || ||||||||||| | |||||||||| || || ||||||||| | | ||||||||||||||||||||||| | || |||| ||||||| ||| || |
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| T |
2859331 |
acggcatttcttatctcaatccaactcactccaggttccttcttaacgtttctttccctcatcattttcctaatcattgtaacactgtcccagctacgtg |
2859430 |
T |
|
| Q |
206 |
ccttagcatatatattcaatagcaacgcatctgtccccacgtcacaagggtcc---------atagtttctgcaatttgtttccccaagctaaaattt-g |
295 |
Q |
| |
|
|||| ||||| ||||| ||||||| | || |||||||| ||||| ||| ||| |||||||||||||||| | |||||||| || ||||| | |
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|
| T |
2859431 |
cctttgcatacatatttgatagcaatgtatatgtccccatgtcacgaggatccatctgtaaaatagtttctgcaatttttgtccccaagttataatttcg |
2859530 |
T |
|
| Q |
296 |
ataaacattgcatgcgttaagcgaaactcatcaggaaacaacgtcccatttcagttgtgttgtcttcatgaagttctcagcctcatcaagcagaccggct |
395 |
Q |
| |
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|| || |||||| ||||||||| | |||| || | |||||| |||||||||| |||||||||| ||||||||||||||||||| ||||||| ||| ||| |
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|
| T |
2859531 |
atgaatattgcaggcgttaagcaatactcgccacgcaacaacatcccatttcacttgtgttgtcctcatgaagttctcagcctcttcaagcataccagct |
2859630 |
T |
|
| Q |
396 |
ctgtacaaaaccgcaactacacagg |
420 |
Q |
| |
|
||| ||||||||||||| ||||||| |
|
|
| T |
2859631 |
ctgcacaaaaccgcaaccacacagg |
2859655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 464 - 724
Target Start/End: Original strand, 2859893 - 2860153
Alignment:
| Q |
464 |
tcatatcaaagaacatattacatgaagaatcaacgatgccgctcttggaatacatatttatcaaaccattcccgacaataacacgattcttaaaaactaa |
563 |
Q |
| |
|
||||||||||||||| || | |||||||||||| | ||| | |||||||||||||||||||||| ||||||||||||||||||||||||||| | |||| |
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|
| T |
2859893 |
tcatatcaaagaacacatcatatgaagaatcaatgcagccacacttggaatacatatttatcaaagcattcccgacaataacacgattcttaatacctaa |
2859992 |
T |
|
| Q |
564 |
cttctcaacccgggcctgcaatagatcaccatgtctaagtgctgctatacctgcacaagcattaagcaaaaccacaaaactgaattcgatggccatagta |
663 |
Q |
| |
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||||||||| || || ||||||||||| |||||||| ||||| || ||||||||| ||||||||||||||||| ||||| |||| ||| ||| ||||||| |
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|
| T |
2859993 |
cttctcaactcgagcatgcaatagatcgccatgtctgagtgccgccatacctgcaaaagcattaagcaaaaccgcaaaagtgaactcgttggacatagta |
2860092 |
T |
|
| Q |
664 |
ccttcttgatcaatgcacgtaagcagattcatagtctcctcaaaatctccattccgcaagt |
724 |
Q |
| |
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|||||| |||| || |||| ||||||||||| |||||||||||| ||||||||| |||||| |
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|
| T |
2860093 |
ccttctcgatccatacacgaaagcagattcaaagtctcctcaaattctccattctgcaagt |
2860153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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