View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0295-INSERTION-8 (Length: 718)

Name: NF0295-INSERTION-8
Description: NF0295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0295-INSERTION-8
NF0295-INSERTION-8
[»] chr4 (31 HSPs)
chr4 (7-718)||(51904477-51905205)
chr4 (403-579)||(5994869-5995045)
chr4 (401-579)||(27654478-27654656)
chr4 (398-572)||(37586474-37586648)
chr4 (441-578)||(51339967-51340103)
chr4 (409-547)||(5027429-5027566)
chr4 (472-577)||(19677326-19677431)
chr4 (401-534)||(24106693-24106826)
chr4 (483-579)||(16318881-16318975)
chr4 (417-579)||(26001447-26001607)
chr4 (438-537)||(32949589-32949688)
chr4 (438-579)||(34004749-34004889)
chr4 (409-498)||(3976415-3976504)
chr4 (418-579)||(8108974-8109134)
chr4 (424-578)||(8567798-8567952)
chr4 (475-579)||(19676607-19676708)
chr4 (449-579)||(39471206-39471335)
chr4 (418-579)||(43771144-43771304)
chr4 (401-533)||(56328679-56328811)
chr4 (418-489)||(50571882-50571953)
chr4 (441-566)||(7853061-7853184)
chr4 (642-688)||(32091500-32091546)
chr4 (501-547)||(39401946-39401992)
chr4 (464-577)||(5545642-5545755)
chr4 (418-580)||(20454558-20454717)
chr4 (645-688)||(22882851-22882894)
chr4 (645-688)||(22934515-22934558)
chr4 (449-484)||(51206092-51206127)
chr4 (417-579)||(47109232-47109394)
chr4 (418-536)||(50481590-50481707)
chr4 (455-560)||(28304036-28304141)
[»] chr2 (21 HSPs)
chr2 (401-579)||(19193504-19193682)
chr2 (438-579)||(6420456-6420595)
chr2 (438-579)||(19953433-19953574)
chr2 (417-532)||(42669778-42669893)
chr2 (449-579)||(18949196-18949326)
chr2 (411-579)||(31494219-31494385)
chr2 (401-579)||(43400134-43400312)
chr2 (418-579)||(12989209-12989369)
chr2 (401-579)||(20458914-20459082)
chr2 (459-547)||(4024748-4024836)
chr2 (438-579)||(30706307-30706448)
chr2 (401-552)||(19190631-19190784)
chr2 (401-579)||(38464164-38464341)
chr2 (409-534)||(37077969-37078094)
chr2 (411-526)||(8163514-8163629)
chr2 (418-574)||(45554585-45554732)
chr2 (455-537)||(34375390-34375472)
chr2 (505-579)||(44152336-44152409)
chr2 (403-468)||(17505921-17505986)
chr2 (418-471)||(36471947-36472000)
chr2 (418-484)||(3804602-3804669)
[»] chr7 (29 HSPs)
chr7 (449-577)||(46994366-46994494)
chr7 (410-573)||(2911771-2911934)
chr7 (401-534)||(23434697-23434829)
chr7 (447-579)||(20954726-20954858)
chr7 (463-547)||(24845463-24845547)
chr7 (401-579)||(4089980-4090156)
chr7 (403-579)||(35549651-35549827)
chr7 (463-547)||(44350218-44350302)
chr7 (429-579)||(33852473-33852621)
chr7 (401-572)||(37489903-37490074)
chr7 (308-396)||(6688283-6688369)
chr7 (398-579)||(24539124-24539305)
chr7 (449-580)||(38065327-38065449)
chr7 (446-579)||(27888328-27888460)
chr7 (440-493)||(32721014-32721067)
chr7 (419-579)||(22189958-22190117)
chr7 (418-536)||(12263481-12263598)
chr7 (495-577)||(25686839-25686920)
chr7 (438-507)||(17354600-17354669)
chr7 (398-579)||(17749692-17749873)
chr7 (417-526)||(39523592-39523701)
chr7 (419-483)||(7775019-7775083)
chr7 (446-534)||(24681643-24681731)
chr7 (447-579)||(41906353-41906485)
chr7 (500-579)||(27949373-27949451)
chr7 (449-534)||(11789821-11789904)
chr7 (418-476)||(19422938-19422996)
chr7 (642-688)||(26639342-26639388)
chr7 (418-483)||(44511033-44511098)
[»] chr8 (26 HSPs)
chr8 (409-532)||(45524924-45525047)
chr8 (398-572)||(24683569-24683743)
chr8 (438-576)||(37927477-37927615)
chr8 (411-575)||(11574036-11574200)
chr8 (447-534)||(9008988-9009075)
chr8 (438-516)||(28485445-28485523)
chr8 (443-537)||(41668592-41668686)
chr8 (401-579)||(45218518-45218694)
chr8 (449-579)||(13407325-13407455)
chr8 (438-547)||(9953702-9953811)
chr8 (490-579)||(38091440-38091529)
chr8 (438-577)||(29011091-29011230)
chr8 (449-528)||(42474010-42474089)
chr8 (410-515)||(24184377-24184482)
chr8 (438-537)||(14636091-14636190)
chr8 (449-512)||(27799274-27799337)
chr8 (495-579)||(16983489-16983572)
chr8 (418-536)||(9952802-9952919)
chr8 (398-512)||(32022911-32023025)
chr8 (450-579)||(5979930-5980057)
chr8 (478-579)||(12212126-12212227)
chr8 (478-579)||(12456554-12456655)
chr8 (417-534)||(13105367-13105483)
chr8 (418-483)||(32072115-32072180)
chr8 (641-686)||(33655407-33655452)
chr8 (473-554)||(35188425-35188506)
[»] scaffold0005 (1 HSPs)
scaffold0005 (401-579)||(296837-297015)
[»] chr1 (21 HSPs)
chr1 (409-579)||(28274795-28274965)
chr1 (398-572)||(18473647-18473821)
chr1 (398-578)||(18157036-18157214)
chr1 (502-574)||(46792979-46793051)
chr1 (409-579)||(18953166-18953335)
chr1 (401-574)||(1468443-1468612)
chr1 (401-547)||(21977188-21977334)
chr1 (463-532)||(11247833-11247902)
chr1 (445-534)||(5602606-5602695)
chr1 (398-579)||(13114671-13114852)
chr1 (438-579)||(21970279-21970420)
chr1 (438-537)||(15741851-15741950)
chr1 (401-511)||(14340990-14341100)
chr1 (459-579)||(30678913-30679032)
chr1 (464-532)||(33234470-33234538)
chr1 (401-513)||(40125906-40126018)
chr1 (461-534)||(2592965-2593038)
chr1 (464-532)||(7549649-7549718)
chr1 (495-573)||(4817179-4817256)
chr1 (412-534)||(25010005-25010126)
chr1 (518-579)||(39974202-39974263)
[»] chr3 (31 HSPs)
chr3 (419-577)||(10798280-10798438)
chr3 (417-579)||(22813273-22813435)
chr3 (401-579)||(7640596-7640774)
chr3 (398-547)||(7791826-7791975)
chr3 (401-572)||(49720010-49720181)
chr3 (441-546)||(10817351-10817457)
chr3 (459-572)||(34706590-34706703)
chr3 (438-579)||(44225836-44225977)
chr3 (463-568)||(53655419-53655524)
chr3 (411-579)||(27243056-27243224)
chr3 (425-532)||(44911653-44911760)
chr3 (401-515)||(214036-214149)
chr3 (417-547)||(38169026-38169156)
chr3 (477-579)||(43657830-43657930)
chr3 (425-579)||(20791321-20791474)
chr3 (513-579)||(40631197-40631263)
chr3 (418-574)||(28529271-28529424)
chr3 (439-579)||(41451897-41452036)
chr3 (495-579)||(52123958-52124041)
chr3 (449-526)||(9774214-9774291)
chr3 (463-532)||(46205580-46205649)
chr3 (439-579)||(24734744-24734883)
chr3 (403-469)||(42780673-42780739)
chr3 (463-537)||(52223463-52223537)
chr3 (441-546)||(17440191-17440296)
chr3 (445-517)||(8475199-8475271)
chr3 (459-547)||(21175550-21175638)
chr3 (449-536)||(18427195-18427281)
chr3 (418-579)||(5452064-5452222)
chr3 (438-579)||(37776705-37776845)
chr3 (438-559)||(37926569-37926690)
[»] chr6 (8 HSPs)
chr6 (409-528)||(25326840-25326959)
chr6 (409-528)||(26159375-26159494)
chr6 (438-527)||(26170944-26171033)
chr6 (401-579)||(12690253-12690431)
chr6 (406-572)||(6163527-6163693)
chr6 (419-579)||(34905355-34905514)
chr6 (401-572)||(29610245-29610416)
chr6 (401-526)||(31947261-31947386)
[»] chr5 (17 HSPs)
chr5 (398-534)||(10299883-10300019)
chr5 (481-573)||(41034437-41034529)
chr5 (410-575)||(20526764-20526929)
chr5 (463-572)||(25002014-25002123)
chr5 (463-567)||(36325501-36325604)
chr5 (441-525)||(43461423-43461507)
chr5 (438-568)||(7585024-7585154)
chr5 (442-577)||(6529877-6530012)
chr5 (409-513)||(1649559-1649662)
chr5 (401-516)||(32309481-32309596)
chr5 (457-579)||(2201590-2201712)
chr5 (459-547)||(5630553-5630641)
chr5 (463-547)||(23260205-23260289)
chr5 (439-534)||(5413784-5413878)
chr5 (642-712)||(316784-316854)
chr5 (418-476)||(17537206-17537264)
chr5 (411-489)||(42224682-42224760)
[»] scaffold0018 (1 HSPs)
scaffold0018 (449-579)||(27861-27990)
[»] scaffold0370 (2 HSPs)
scaffold0370 (89-129)||(11209-11249)
scaffold0370 (89-129)||(16499-16539)
[»] scaffold0147 (1 HSPs)
scaffold0147 (438-536)||(28334-28432)
[»] scaffold0155 (1 HSPs)
scaffold0155 (438-489)||(35632-35683)
[»] scaffold0886 (1 HSPs)
scaffold0886 (441-526)||(3286-3371)


Alignment Details
Target: chr4 (Bit Score: 599; Significance: 0; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 7 - 718
Target Start/End: Complemental strand, 51905205 - 51904477
Alignment:
Q  7 aaagaggcgtgttagctgagggcaagatctgatgatgatatgttagttgatcctacaataagacgtggtgcgcagggtatgaaattttcagcttttggag 106  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51905205 aaagaggcgtgtttgctgagggcaagatctgatgatgatatgttagttgatcctacaataagacgtggtgcgcagggtatgaaattttcagcttttggag 51905106  T
Q  107 tgtataaaaggccaacatttttt--ctgtgtgtgtaatctcatgaaatcaaaagagaagactcttagaaacacatggaaaacacgagagtctgagaggtt 204  Q
     ||||||||||||||| ||||||  |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  51905105 ggtataaaaggccaacgtttttttcctgtgtgtgtaatctcatgaaaccaaaagaggagactcttagaaacacatggaaaacacgagagtttgagaggtt 51905006  T
Q  205 tgtatgcaacttgggtgaatcttgaaagatcaaaagaaaaaacatttaagggttgctgcattgttaggagagattctatagttggaaaatattttctaaa 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  51905005 tgtatgcaacttgggtgaatcttgaaagatcaaaagaaaaaacatttaagggttgctgcattgttaggagagattctatagttggaaaatactttgtaaa 51904906  T
Q  305 caaagtgaaaattattaagtgattataagagggtgaatgagagaaatttttaggggatgttcttgaagagtattgggagctaaatttattggaagaaatg 404  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51904905 caaagtgaaaatttttaagtgattataagagggtaaatgagagaaatttttaggggatgttcttgaagagtattgggagctaaatttattggaagaaatg 51904806  T
Q  405 ctaaggacactatctttt--------------caacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtgga 490  Q
    ||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51904805 ctaaggacactatcttttcaactctatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtgga 51904706  T
Q  491 acctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagcggtactaattt 590  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||  |||||||||    
T  51904705 acctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagagagagtgttgaaaagagagtgttgctagcaatactaattt 51904606  T
Q  591 cttggtcacttttgtatactctcatcatcaagcgaaaaaagtgagaaatcatagaaattagatatgttcttggagagtttgttgaatctaatttcttgc- 689  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  51904605 cttggtcacttttgtatactctcatcatcaagcgaaaaaagtgagaaatcatagaaattagatatgttcttggagagtttgtcgaatctaatttcttgca 51904506  T
Q  690 actctttgtatttctctttgtaatgaccc 718  Q
    ||||||||||| |||||||||||||||||    
T  51904505 actctttgtatctctctttgtaatgaccc 51904477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 403 - 579
Target Start/End: Complemental strand, 5995045 - 5994869
Alignment:
Q  403 tgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaa 502  Q
    ||||| ||||| | |||||||||||||||||||  |||||||||||||||| ||| |||  |||||||||| || |||||||||||||||| |||| |||    
T  5995045 tgctagggacattctcttttcaacactctctttaacactcattctcttattggataaaactaatgtatgactcaccactttaagtggaacccatttccaa 5994946  T
Q  503 agtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
     |||||||||||||||||||||||| |||| |||| || | |||| || ||| ||||||||||||| ||||||||||    
T  5994945 tgtgtgagacccaccatgatttaagtcaattagaaagtgaatgttggagagagtgttgaaaagagactgttgctagc 5994869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 401 - 579
Target Start/End: Original strand, 27654478 - 27654656
Alignment:
Q  401 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 500  Q
    ||||||| ||||||| ||||||||||||||||| |  |||||||||||||||| ||| |||  |||||||| |||| |||||||||||||||| |||| |    
T  27654478 aatgctagggacactctcttttcaacactctctctaacactcattctcttattggataaaactaatgtatgtcccaccactttaagtggaacccatttcc 27654577  T
Q  501 aaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    || |||||| | ||||| |||||||| ||||||| ||  | |||||| || ||| ||||||||||||||||||||||||    
T  27654578 aacgtgtgaaatccaccttgatttaaaccaataataaattgagtgtttgagagagtgttgaaaagagagtgttgctagc 27654656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 398 - 572
Target Start/End: Complemental strand, 37586648 - 37586474
Alignment:
Q  398 agaaatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatt 497  Q
    |||||||||||||||||| ||||||||||||||| ||   |||||| | | | ||| | | ||| |||| | ||||||| ||||||||||||| || |||    
T  37586648 agaaatgctaaggacactctcttttcaacactctattcaacactcactttttaattggcttaaaccaatatgtgacccaccactttaagtggatcccatt 37586549  T
Q  498 tacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgt 572  Q
    | ||||||||||||||||||||||||||||| ||| |||| || |||||| || ||| |||||||||||| ||||    
T  37586548 ttcaaagtgtgagacccaccatgatttaagctaattagaaagtgagtgttggagagagtgttgaaaagagggtgt 37586474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 441 - 578
Target Start/End: Complemental strand, 51340103 - 51339967
Alignment:
Q  441 tcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgt 540  Q
    ||||||| ||||| ||||||| ||||||| |||||| | ||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||  |    
T  51340103 tcattcttttatttgatgaaaccaatgtacgacccaccgctttaagtgaaacctatttccaaagtgtgagacccactatgatttaagccaataagaaaat 51340004  T
Q  541 aagtgttagaaagattgttgaaaagagagtgttgctag 578  Q
     ||||| | | ||| |||| |||| |||||||||||||    
T  51340003 gagtgtga-agagagtgttaaaaaaagagtgttgctag 51339967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 409 - 547
Target Start/End: Complemental strand, 5027566 - 5027429
Alignment:
Q  409 ggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtg 508  Q
    ||||||| |||||| ||||||||||||  |||||||| | ||||| |||| ||||||| |||||||||||||||||||| ||| | |||| |||| ||||    
T  5027566 ggacactctcttttgaacactctctttaacactcatttt-ttattggatgtaatcaatatatgacccatcactttaagttgaatcgattttcaaaatgtg 5027468  T
Q  509 agacccaccatgatttaagccaataagaatgtaagtgtt 547  Q
    |||| || | |||||||||||||||| || || ||||||    
T  5027467 agactcatcttgatttaagccaataaaaaagtgagtgtt 5027429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 472 - 577
Target Start/End: Original strand, 19677326 - 19677431
Alignment:
Q  472 acccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtg 571  Q
    ||||||||||||||||| |||| |||| |||||||||||| | || ||||||||| ||||| |||| || |||||| || |||||||| |||||| ||||    
T  19677326 acccatcactttaagtgaaacccattttcaaagtgtgagatctactatgatttaaaccaattagaaagtgagtgttggagagattgttaaaaagatagtg 19677425  T
Q  572 ttgcta 577  Q
    ||||||    
T  19677426 ttgcta 19677431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 401 - 534
Target Start/End: Complemental strand, 24106826 - 24106693
Alignment:
Q  401 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 500  Q
    |||||||| |||||| ||||||||||||||||| |  ||| || ||||||||| |||||||  |||| ||| ||||| ||||||||||||||  ||||      
T  24106826 aatgctaatgacactctcttttcaacactctctctaacacccactctcttattggatgaaactaatgcatgtcccatgactttaagtggaactcatttct 24106727  T
Q  501 aaagtgtgagacccaccatgatttaagccaataa 534  Q
    || |||| ||||||||| |||||||| |||||||    
T  24106726 aatgtgtaagacccaccttgatttaaaccaataa 24106693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 483 - 579
Target Start/End: Original strand, 16318881 - 16318975
Alignment:
Q  483 taagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    ||||||||||| |||| ||||||||||||| || |||||||||||||||| |||| || | |||| |||||| ||||||||  ||||||||||||||    
T  16318881 taagtggaaccaatttccaaagtgtgagactcatcatgatttaagccaattagaaagtgattgttggaaagagtgttgaaa--agagtgttgctagc 16318975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 417 - 579
Target Start/End: Original strand, 26001447 - 26001607
Alignment:
Q  417 tcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccac 516  Q
    ||||||||||||||||||   || ||||||| ||||| ||| |||  ||||||||| |||||||||||| || |||  |||| |||||||||||||| |     
T  26001447 tcttttcaacactctcttcaacattcattcttttattggataaaagtaatgtatgatccatcactttaaatgaaactcattttcaaagtgtgagacctat 26001546  T
Q  517 catgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
     ||| ||||||||||| |||| || ||| || |  ||| ||||||||||| |||||| |||||    
T  26001547 tatgttttaagccaattagaaagtgagtattgg--agagtgttgaaaagaaagtgttactagc 26001607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 438 - 537
Target Start/End: Original strand, 32949589 - 32949688
Alignment:
Q  438 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaa 537  Q
    |||||||| | ||||| ||| |||  ||||||||| ||| |||||||| ||||||  |||| |||||||| |||||||||||||||||||||||| ||||    
T  32949589 cactcatttttttattggataaaactaatgtatgatccaccactttaactggaactaatttccaaagtgtaagacccaccatgatttaagccaattagaa 32949688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 438 - 579
Target Start/End: Complemental strand, 34004889 - 34004749
Alignment:
Q  438 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaag-ccaataaga 536  Q
    |||| ||||| |||||||||||||  ||||||||||||| |||||| |||| ||||||||   |||  ||||||| || ||| ||||||| ||||||| |    
T  34004889 cacttattcttttattagatgaaagtaatgtatgacccaccacttttagtgaaacctattattaaa--gtgagactcatcataatttaagcccaataaaa 34004792  T
Q  537 atgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    ||||||||| | || ||| |||| |||||||| ||||||||||    
T  34004791 atgtaagtggtggagagagtgttaaaaagagaatgttgctagc 34004749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 409 - 498
Target Start/End: Complemental strand, 3976504 - 3976415
Alignment:
Q  409 ggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctattt 498  Q
    ||||||| | ||||||||||||||||   |||||||||||||||| ||| ||| |||||||||| ||| || ||||||||||||| ||||    
T  3976504 ggacactctattttcaacactctcttcaacactcattctcttatttgataaaaccaatgtatgatccaccattttaagtggaacccattt 3976415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 418 - 579
Target Start/End: Original strand, 8108974 - 8109134
Alignment:
Q  418 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccacc 517  Q
    |||||||||||||||| |  |||||| ||| ||||| | ||||||||||||||| ||||  | |||  ||     | |||| |||||||| ||||||||     
T  8108974 cttttcaacactctctctagcactcactcttttattgggtgaaatcaatgtatgtcccactaatttgtgtttgttcaattttcaaagtgt-agacccaca 8109072  T
Q  518 atgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    ||||||||| |||||||||| || ||| ||||| ||| |||| |||||||||||||||||||    
T  8109073 atgatttaaaccaataagaaagtgagtattagagagagtgttcaaaagagagtgttgctagc 8109134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 424 - 578
Target Start/End: Original strand, 8567798 - 8567952
Alignment:
Q  424 aacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatt 523  Q
    |||||||||||   || |||||||||||||  |||||| || ||||||||||| |||||| ||||||| | |||  |||||  || ||| |  |||||||    
T  8567798 aacactctcttcaacattcattctcttattgcatgaaaccattgtatgacccaccactttgagtggaatccattcccaaagcatgcgactcgtcatgatt 8567897  T
Q  524 taagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctag 578  Q
    ||||||| ||| || || |||| |||| | | ||||||||| |||||||||||||    
T  8567898 taagccattaaaaaagtgagtggtagagaaagtgttgaaaatagagtgttgctag 8567952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 475 - 579
Target Start/End: Original strand, 19676607 - 19676708
Alignment:
Q  475 catcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttg 574  Q
    ||||||||||||||||||| ||||  ||||||||||||| || ||||||||| ||||| |||| || |||||     ||| ||||||||||| |||||||    
T  19676607 catcactttaagtggaacccatttttaaagtgtgagacctactatgatttaaaccaattagaaagtgagtgt---ggagagtgttgaaaagatagtgttg 19676703  T
Q  575 ctagc 579  Q
    |||||    
T  19676704 ctagc 19676708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 449 - 579
Target Start/End: Original strand, 39471206 - 39471335
Alignment:
Q  449 ttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgtta 548  Q
    ||||||||||||||||||||||| |||| ||||||  || |   | || | |||||||| |||||||| ||||||||| |||||||||  || ||| |||    
T  39471206 ttattagatgaaatcaatgtatgtcccaccactttgtgttggttcaatcttcaaagtgt-agacccacaatgatttaaaccaataagagagtgagtatta 39471304  T
Q  549 gaaagattgttgaaaagagagtgttgctagc 579  Q
    || ||| |||| |||||||||||||| ||||    
T  39471305 gagagaatgtttaaaagagagtgttgttagc 39471335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 418 - 579
Target Start/End: Original strand, 43771144 - 43771304
Alignment:
Q  418 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccacc 517  Q
    ||||| |||||||||| | | ||||| ||| ||||| ||||||||||||||||| |||| |||| |  ||||   | |||| |||||||| ||||||||     
T  43771144 cttttgaacactctctctatgactcactcttttattggatgaaatcaatgtatgtcccaccactctgtgtgggttcaattttcaaagtgt-agacccaca 43771242  T
Q  518 atgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    ||||||||| |||||||||  || ||| ||| | ||  |||| ||||||||| |||||||||    
T  43771243 atgatttaaaccaataagagagtgagtattaaagagggtgttcaaaagagagcgttgctagc 43771304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 401 - 533
Target Start/End: Original strand, 56328679 - 56328811
Alignment:
Q  401 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 500  Q
    |||||||| ||||||   |||||||||||||||||  |||||||||||||||  ||||||| |||  ||||||||  ||||||||| |  ||| ||||      
T  56328679 aatgctaatgacacttgtttttcaacactctctttaacactcattctcttatcggatgaaaccaacctatgacccgacactttaagagatacccatttct 56328778  T
Q  501 aaagtgtgagacccaccatgatttaagccaata 533  Q
    ||||||||  || ||| |||||||||| |||||    
T  56328779 aaagtgtggaacacactatgatttaagtcaata 56328811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 418 - 489
Target Start/End: Original strand, 50571882 - 50571953
Alignment:
Q  418 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtgg 489  Q
    |||||||||||||||| |  |||| | ||| ||||||||||||||||||||||| ||||||| |||| ||||    
T  50571882 cttttcaacactctctctagcacttactcttttattagatgaaatcaatgtatgccccatcaatttatgtgg 50571953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 441 - 566
Target Start/End: Original strand, 7853061 - 7853184
Alignment:
Q  441 tcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgt 540  Q
    ||||||||||||||||| |||| |||||||||| | |||||| ||||| || | ||||  |||  || ||||||| ||||| |||||| |||||||  ||    
T  7853061 tcattctcttattagataaaattaatgtatgactcttcacttaaagtgaaatccatttttaaa--gttagacccatcatgacttaagctaataagagagt 7853158  T
Q  541 aagtgttagaaagattgttgaaaaga 566  Q
     |||| | |||||| |||||||||||    
T  7853159 gagtggtggaaagagtgttgaaaaga 7853184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 642 - 688
Target Start/End: Original strand, 32091500 - 32091546
Alignment:
Q  642 tagaaattagatatgttcttggagagtttgttgaatctaatttcttg 688  Q
    |||||||||| | |||||||||||||||||||||| |||||||||||    
T  32091500 tagaaattaggtttgttcttggagagtttgttgaaactaatttcttg 32091546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 501 - 547
Target Start/End: Original strand, 39401946 - 39401992
Alignment:
Q  501 aaagtgtgagacccaccatgatttaagccaataagaatgtaagtgtt 547  Q
    ||||||||||||||| |||||||||||||||||| || |||||||||    
T  39401946 aaagtgtgagacccatcatgatttaagccaataaaaaagtaagtgtt 39401992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 464 - 577
Target Start/End: Original strand, 5545642 - 5545755
Alignment:
Q  464 aatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaa 563  Q
    |||||||| |||| ||||||| ||||   | |||| |||| ||| ||||||||  |||||||||| ||| | || |||||| ||||| ||| |||| |||    
T  5545642 aatgtatgtcccaccactttatgtgggctccattttcaaaatgtaagacccacattgatttaagcaaattaaaaagtaagtattagagagagtgttcaaa 5545741  T
Q  564 agagagtgttgcta 577  Q
    ||||||||||||||    
T  5545742 agagagtgttgcta 5545755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 580
Target Start/End: Original strand, 20454558 - 20454717
Alignment:
Q  418 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccacc 517  Q
    |||||||||||||||| |  |||||| ||| ||||||||| ||||||||||||| ||   ||||||  || |   | |||| |||||||| ||| ||||     
T  20454558 cttttcaacactctctctagcactcactcttttattagataaaatcaatgtatgtcc--acactttgtgttggttcaattttcaaagtgt-agatccaca 20454654  T
Q  518 atgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagcg 580  Q
    |||||||||  |||||| |  || ||||||||| ||| |||| |||||||| |||||||||||    
T  20454655 atgatttaaatcaataacagagtgagtgttagagagagtgttcaaaagagaatgttgctagcg 20454717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 645 - 688
Target Start/End: Complemental strand, 22882894 - 22882851
Alignment:
Q  645 aaattagatatgttcttggagagtttgttgaatctaatttcttg 688  Q
    ||||||| | |||||||||||||||||||||| |||||||||||    
T  22882894 aaattaggtttgttcttggagagtttgttgaagctaatttcttg 22882851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 645 - 688
Target Start/End: Complemental strand, 22934558 - 22934515
Alignment:
Q  645 aaattagatatgttcttggagagtttgttgaatctaatttcttg 688  Q
    ||||||| | |||||||||||||||||||||| |||||||||||    
T  22934558 aaattaggtttgttcttggagagtttgttgaagctaatttcttg 22934515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 449 - 484
Target Start/End: Original strand, 51206092 - 51206127
Alignment:
Q  449 ttattagatgaaatcaatgtatgacccatcacttta 484  Q
    ||||||||||||||||||||||| ||||||||||||    
T  51206092 ttattagatgaaatcaatgtatgtcccatcacttta 51206127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 417 - 579
Target Start/End: Original strand, 47109232 - 47109394
Alignment:
Q  417 tcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccac 516  Q
    |||||| |||||| |||||  |||||||||| |||||   | |||| ||||||||  ||| ||||||||||  |||  |||| |||||||||| || |||    
T  47109232 tcttttaaacactttctttaacactcattcttttattgactaaaattaatgtatgttccaccactttaagtaaaactcatttccaaagtgtgaaactcac 47109331  T
Q  517 catgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
      |||||||| ||||| | || |||||| || |||||| | || | || ||||||||||||||    
T  47109332 tttgatttaaaccaatgaaaaagtaagtatttgaaagagtatttataaaagagtgttgctagc 47109394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 536
Target Start/End: Complemental strand, 50481707 - 50481590
Alignment:
Q  418 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccacc 517  Q
    |||||||||||||| ||| ||||||| ||| ||||| ||||||||||| ||||| | || ||||||   |||   |||||| |||||||| |||| |||     
T  50481707 cttttcaacactctttttctcactcactcttttattggatgaaatcaaagtatgtctcaccactttgtatggtttctattttcaaagtgt-agacacaca 50481609  T
Q  518 atgatttaagccaataaga 536  Q
    || |||||| |||||||||    
T  50481608 atcatttaaaccaataaga 50481590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 455 - 560
Target Start/End: Complemental strand, 28304141 - 28304036
Alignment:
Q  455 gatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaaga 554  Q
    ||||||||||||| ||| |||| |||||| |||||   | |||| ||||||||| || ||||| ||||||||| |||||| || ||  |||||||| |||    
T  28304141 gatgaaatcaatgcatgtcccaccacttttagtggggtccattttcaaagtgtgtgatccaccttgatttaagtcaataaaaaagtgggtgttagagaga 28304042  T
Q  555 ttgttg 560  Q
     |||||    
T  28304041 gtgttg 28304036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 4e-46; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 401 - 579
Target Start/End: Complemental strand, 19193682 - 19193504
Alignment:
Q  401 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 500  Q
    |||||||  |||||| ||||||||||||||||||   |||||||||||||||| ||| ||| |||||||||||||| ||||||||||| ||||||||| |    
T  19193682 aatgctagagacactctcttttcaacactctcttgaacactcattctcttattggataaaaccaatgtatgacccaccactttaagtgaaacctatttcc 19193583  T
Q  501 aaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    ||||| |||||||||||||||||||| | ||| |||| || |||||| || ||| ||||||||||||||||||||||||    
T  19193582 aaagtatgagacccaccatgatttaaactaattagaaagtgagtgttggagagagtgttgaaaagagagtgttgctagc 19193504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 438 - 579
Target Start/End: Complemental strand, 6420595 - 6420456
Alignment:
Q  438 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaa 537  Q
    |||||||| | ||||| | |||||| ||||||||||||| || |||||||| ||||||||| |||  |||||||||||||||||||||||||||||||||    
T  6420595 cactcatttttttattgggtgaaattaatgtatgacccaccattttaagtgaaacctatttccaa--tgtgagacccaccatgatttaagccaataagaa 6420498  T
Q  538 tgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
     || |||| | || ||| ||||||||||||||||||||||||    
T  6420497 agtgagtggtggagagagtgttgaaaagagagtgttgctagc 6420456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 438 - 579
Target Start/End: Original strand, 19953433 - 19953574
Alignment:
Q  438 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaa 537  Q
    |||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||| |||| ||||||||||||| ||| ||||||||| ||||||| ||    
T  19953433 cactcattcttttattggatgaaaccaatgtatgacccaccactttaagtggaacccatttccaaagtgtgagactcactatgatttaatccaataaaaa 19953532  T
Q  538 tgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
     || ||| || || | | |||| |||||||||||||||||||    
T  19953533 agtgagtattggagaaaatgttaaaaagagagtgttgctagc 19953574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 417 - 532
Target Start/End: Complemental strand, 42669893 - 42669778
Alignment:
Q  417 tcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccac 516  Q
    ||||||||||||||||||   |||||||| ||||||| |||  ||||||||||||||||| ||||||||||| |||| |||| |||||||||| ||||||    
T  42669893 tcttttcaacactctcttcaacactcattttcttattggatagaatcaatgtatgacccaccactttaagtgaaacccatttccaaagtgtgaaacccac 42669794  T
Q  517 catgatttaagccaat 532  Q
    ||||||||||||||||    
T  42669793 catgatttaagccaat 42669778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 449 - 579
Target Start/End: Complemental strand, 18949326 - 18949196
Alignment:
Q  449 ttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgtta 548  Q
    ||||| ||| ||| |||||||||| |||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||| ||||  | ||||||     
T  18949326 ttattggataaaaccaatgtatgatccatcactttaagtggaacccatttttaaagtgtgagacccaccatgatttaagccaattagaaattgagtgttg 18949227  T
Q  549 gaaagattgttgaaaagagagtgttgctagc 579  Q
    || | | |||||||||||||||||| |||||    
T  18949226 gagaaagtgttgaaaagagagtgttcctagc 18949196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 411 - 579
Target Start/End: Original strand, 31494219 - 31494385
Alignment:
Q  411 acactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgag 510  Q
    ||||| |||||||||||||||||    |||||| ||||||||| |||||||  |||||||| ||||  ||||||||||||||| |||| ||| |||||||    
T  31494219 acactctcttttcaacactctctaa--cactcactctcttattggatgaaaataatgtatgtcccactactttaagtggaacccatttccaatgtgtgag 31494316  T
Q  511 acccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    ||||||| ||||||||||||||||  | || ||||||    ||| ||||||||||||||||||||||||    
T  31494317 acccaccttgatttaagccaataatgaagtgagtgtttaggagagtgttgaaaagagagtgttgctagc 31494385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 401 - 579
Target Start/End: Original strand, 43400134 - 43400312
Alignment:
Q  401 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 500  Q
    ||||||| ||| ||| ||||||||||||||||| |  |||||| | ||||||| |||||||  | |||||| |||| ||||||||||||||||||||  |    
T  43400134 aatgctatggatactctcttttcaacactctctctaacactcactttcttattggatgaaactagtgtatgtcccaccactttaagtggaacctattatc 43400233  T
Q  501 aaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    || |||||| ||||||| |||||||| ||||||| ||  | ||||||    ||| ||||||||||||||||||||||||    
T  43400234 aatgtgtgaaacccaccttgatttaaaccaataataaaatgagtgtttaggagagtgttgaaaagagagtgttgctagc 43400312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 418 - 579
Target Start/End: Original strand, 12989209 - 12989369
Alignment:
Q  418 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccacc 517  Q
    |||||||||||||||||| ||||||| ||| | ||| ||||||||||||||||| |||| ||||||   ||||  |||||| | |||||| ||||||||     
T  12989209 cttttcaacactctctttctcactcactctttcattggatgaaatcaatgtatgtcccaccactttgtatggattctatttccgaagtgt-agacccaca 12989307  T
Q  518 atgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    ||||||||| |||||||||  || ||| ||||| ||| |||| |||||||||||||||||||    
T  12989308 atgatttaaaccaataagagagtgagtattagagagagtgttcaaaagagagtgttgctagc 12989369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 401 - 579
Target Start/End: Original strand, 20458914 - 20459082
Alignment:
Q  401 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 500  Q
    ||||||||||||||| ||||  ||||||||||||   |||||||||||||||| ||||||| || ||| |||| || |||||| ||||||||| |||| |    
T  20458914 aatgctaaggacactctctt--caacactctcttaaacactcattctcttattggatgaaaccattgtttgactcaccactttgagtggaacccattttc 20459011  T
Q  501 aaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    |||||        ||||| |||| ||||||||||||| || |||| | || ||| ||||||||||||||||||||||||    
T  20459012 aaagt--------caccacgattcaagccaataagaaagtgagtggtggagagagtgttgaaaagagagtgttgctagc 20459082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 459 - 547
Target Start/End: Original strand, 4024748 - 4024836
Alignment:
Q  459 aaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgtt 547  Q
    |||||||| | |||||||  ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||  ||||||||    
T  4024748 aaatcaatatgtgacccacaactttaagtggaacccattttcaaagtgtgagacccaccatgatttaagccaattagaaaataagtgtt 4024836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 438 - 579
Target Start/End: Original strand, 30706307 - 30706448
Alignment:
Q  438 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaa 537  Q
    |||||| ||||||||| |||||||| |||||||| | || || ||||| ||||||  |||| ||| || ||||||||||| | |||||| |||| || ||    
T  30706307 cactcactctcttatttgatgaaattaatgtatgtctcaccagtttaaatggaactcattttcaatgtatgagacccaccttaatttaaaccaacaataa 30706406  T
Q  538 tgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
     || |||||| || ||| ||||||||||||||||||||||||    
T  30706407 agtgagtgtttgagagagtgttgaaaagagagtgttgctagc 30706448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 401 - 552
Target Start/End: Original strand, 19190631 - 19190784
Alignment:
Q  401 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaat--gtatgacccatcactttaagtggaacctattt 498  Q
    |||||||  |||||| |||||| | |||||||| |  |||||||| ||||||| |||||||| |||  |||||  ||| |||||||||||||| | ||||    
T  19190631 aatgctagagacactctcttttaagcactctctctaacactcattttcttattggatgaaattaatatgtatgttccaccactttaagtggaatccattt 19190730  T
Q  499 acaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaa 552  Q
      ||||||| ||||||||| |||||||| ||||| |||| ||||||||| ||||    
T  19190731 ttaaagtgttagacccaccttgatttaaaccaatgagaaagtaagtgttggaaa 19190784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 401 - 579
Target Start/End: Original strand, 38464164 - 38464341
Alignment:
Q  401 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 500  Q
    ||||||||| ||| |  |||||||||||||||| || || | | | | |||||  |||||||||||||||| | |||||||||  ||||   | |||| |    
T  38464164 aatgctaagaacattcacttttcaacactctctctgacaattacttttttattgtatgaaatcaatgtatgtctcatcactttgcgtgggttcaattttc 38464263  T
Q  501 aaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    ||||||| |||||||| ||||||||| |||||||||  |||||| ||||| ||| |||| |||||||||| ||||||||    
T  38464264 aaagtgt-agacccacaatgatttaaaccaataagagagtaagtattagagagagtgttcaaaagagagtattgctagc 38464341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 409 - 534
Target Start/End: Original strand, 37077969 - 37078094
Alignment:
Q  409 ggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtg 508  Q
    ||||||| ||||||||||||| ||| |  ||| || ||||||||| |||| ||| | |||||| |||| |||||||||||||| | |||| ||| |||||    
T  37077969 ggacactctcttttcaacactttctctaacacacactctcttattggatgtaattagtgtatgtcccaccactttaagtggaatccatttccaatgtgtg 37078068  T
Q  509 agacccaccatgatttaagccaataa 534  Q
    ||||||||| | |||||| |||||||    
T  37078069 agacccaccttaatttaaaccaataa 37078094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 411 - 526
Target Start/End: Complemental strand, 8163629 - 8163514
Alignment:
Q  411 acactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgag 510  Q
    |||||||||||| |||||||| ||   |||||||| | ||||| ||| |||||||||||||||||| ||||||||||| |||  ||||  |||||  |||    
T  8163629 acactatctttttaacactcttttcaacactcatttttttattggataaaatcaatgtatgacccaccactttaagtgaaactcatttttaaagtaggag 8163530  T
Q  511 acccaccatgatttaa 526  Q
    || |||| ||||||||    
T  8163529 actcaccgtgatttaa 8163514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 418 - 574
Target Start/End: Original strand, 45554585 - 45554732
Alignment:
Q  418 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccacc 517  Q
    |||||||||||||||| |  |||||| ||| ||||| ||||||||||||||||| |||| ||||||         | |||| | |||||| ||||||||     
T  45554585 cttttcaacactctctctagcactcactcttttattggatgaaatcaatgtatgtcccaccacttt--------gcaattttccaagtgt-agacccaca 45554675  T
Q  518 atgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttg 574  Q
    ||||||||| |||||||||| || ||| ||||| ||| |||| ||||||||||||||    
T  45554676 atgatttaaaccaataagaaagtgagtattagagagaatgttcaaaagagagtgttg 45554732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 455 - 537
Target Start/End: Complemental strand, 34375472 - 34375390
Alignment:
Q  455 gatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaa 537  Q
    |||||||| ||||||||||||| |||||||||  ||||  ||||| || |||| ||||||||| | |||||||| ||||||||    
T  34375472 gatgaaattaatgtatgacccaccactttaagccgaactcatttataatgtgtaagacccaccttaatttaagctaataagaa 34375390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 505 - 579
Target Start/End: Original strand, 44152336 - 44152409
Alignment:
Q  505 tgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    ||||||||||||| |||||||| ||||||| || || ||||||||| ||| ||||||| | ||||||||||||||    
T  44152336 tgtgagacccaccttgatttaaaccaataa-aaagtgagtgttagagagaatgttgaacaaagagtgttgctagc 44152409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 403 - 468
Target Start/End: Complemental strand, 17505986 - 17505921
Alignment:
Q  403 tgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgt 468  Q
    ||||||| |||||||||||||||||||||||    |||||||||||| |||  |||||||||||||    
T  17505986 tgctaagaacactatcttttcaacactctctcaaacactcattctctaattgaatgaaatcaatgt 17505921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 36472000 - 36471947
Alignment:
Q  418 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatg 471  Q
    |||||||||||||||| || |||||| ||||||||| ||||||||||| |||||    
T  36472000 cttttcaacactctctctgacactcaatctcttattggatgaaatcaaagtatg 36471947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 484
Target Start/End: Original strand, 3804602 - 3804669
Alignment:
Q  418 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatg-acccatcacttta 484  Q
    ||||||||||||||||||  || ||| ||| ||||| |||||||||||||||||  ||||||||||||    
T  3804602 cttttcaacactctctttaacattcactcttttattggatgaaatcaatgtatgtccccatcacttta 3804669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 449 - 577
Target Start/End: Complemental strand, 46994494 - 46994366
Alignment:
Q  449 ttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgtta 548  Q
    |||||||||||||||||||||||||||| |||||||||||  | | |||| ||||||||||||||||||||||||||||||||||| || || |||||||    
T  46994494 ttattagatgaaatcaatgtatgacccaccactttaagtgatatccatttccaaagtgtgagacccaccatgatttaagccaataaaaaagtgagtgtta 46994395  T
Q  549 gaaagattgttgaaaagagagtgttgcta 577  Q
    || |||  ||| |||||||||||||||||    
T  46994394 gagagagcgttaaaaagagagtgttgcta 46994366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 410 - 573
Target Start/End: Original strand, 2911771 - 2911934
Alignment:
Q  410 gacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtga 509  Q
    |||||| ||||||||||||| ||||   ||||||||||||||||  ||  ||| |||||||||| ||||||||||||||||||||||||  |||||||||    
T  2911771 gacactctcttttcaacactatcttcaacactcattctcttattgaatataattaatgtatgactcatcactttaagtggaacctatttctaaagtgtga 2911870  T
Q  510 gacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgtt 573  Q
    || |||||||||||||||||||||| || || ||| || || ||| ||||||||||| ||||||    
T  2911871 gatccaccatgatttaagccaataaaaaagtgagtattggagagagtgttgaaaagaaagtgtt 2911934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 401 - 534
Target Start/End: Original strand, 23434697 - 23434829
Alignment:
Q  401 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 500  Q
    ||||||| |||||||   ||||||||||||||||   |||||||||||||||| ||| ||| |||||||||| ||| |||||||||| ||||  ||||      
T  23434697 aatgctagggacactcctttttcaacactctcttcaacactcattctcttattggataaaaccaatgtatgatccaccactttaagt-gaacacatttct 23434795  T
Q  501 aaagtgtgagacccaccatgatttaagccaataa 534  Q
    ||||||||||||||||||| ||||||||||||||    
T  23434796 aaagtgtgagacccaccataatttaagccaataa 23434829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 447 - 579
Target Start/End: Original strand, 20954726 - 20954858
Alignment:
Q  447 tcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgt 546  Q
    ||||||| | |||||| ||||||| |||||  ||||| | ||||||  ||||  |||||||||||| ||||||||||||||||||||| || || |||||    
T  20954726 tcttattcggtgaaattaatgtataacccactactttgaatggaactcatttctaaagtgtgagactcaccatgatttaagccaataaaaaagtgagtgt 20954825  T
Q  547 tagaaagattgttgaaaagagagtgttgctagc 579  Q
    | || ||| ||||||||||||||||||||||||    
T  20954826 ttgagagagtgttgaaaagagagtgttgctagc 20954858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 463 - 547
Target Start/End: Complemental strand, 24845547 - 24845463
Alignment:
Q  463 caatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgtt 547  Q
    |||||| ||||||| |||||||||||||||| |||| ||||||||||||| ||||||||||||||||||| |||| || ||||||    
T  24845547 caatgtgtgacccaccactttaagtggaacccatttccaaagtgtgagactcaccatgatttaagccaattagaaagtgagtgtt 24845463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 401 - 579
Target Start/End: Complemental strand, 4090156 - 4089980
Alignment:
Q  401 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 500  Q
    |||||||||| || | | ||||||||| |||||||  |||| ||| | ||||| |||||||||||| ||||||||||||||||  |||| ||| ||||      
T  4090156 aatgctaagggcattcttttttcaacattctctttaacacttatttttttattggatgaaatcaatctatgacccatcacttt--gtggtacccatttct 4090059  T
Q  501 aaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    |||||||||||| ||||||||||| |||  |||| || || |||||| || ||| |||| |||||| |||| |||||||    
T  4090058 aaagtgtgagactcaccatgattttagcttataaaaaagtgagtgttggagagaatgttaaaaagaaagtgctgctagc 4089980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 403 - 579
Target Start/End: Complemental strand, 35549827 - 35549651
Alignment:
Q  403 tgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaa 502  Q
    ||||| ||||||| |||||||||||||| | ||  |||| || || ||||| ||||||| ||||||| || ||| || |||  |||||||| |||| |||    
T  35549827 tgctagggacactctcttttcaacactccccttaacacttatccttttattggatgaaaccaatgtaggatccaccattttttgtggaacccattttcaa 35549728  T
Q  503 agtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    ||  || || |||||||||  ||||||||||| ||  | |||| |||| ||| ||||||||||||||||||||||||    
T  35549727 agcatgggatccaccatgaaataagccaataaaaagatgagtggtagagagagtgttgaaaagagagtgttgctagc 35549651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 463 - 547
Target Start/End: Original strand, 44350218 - 44350302
Alignment:
Q  463 caatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgtt 547  Q
    |||||| ||||||| || ||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||| || ||||||    
T  44350218 caatgtgtgacccaccattttaagtggaatccatttccaaagtgtgagacccaccatgatttaagccaattagaaagtgagtgtt 44350302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 429 - 579
Target Start/End: Complemental strand, 33852621 - 33852473
Alignment:
Q  429 tctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagc 528  Q
    |||||||  ||||||||||||||||||||||||| | |||||| |||| |||||||||||||| | |||| |||  |||||| | || | | |||| | |    
T  33852621 tctctttaacactcattctcttattagatgaaattagtgtatgtcccaccactttaagtggaatccatttccaatatgtgagtctcatcttaatttgaac 33852522  T
Q  529 caataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    ||||||  | |||||| || |||||  ||||||||||||||| ||||||||    
T  33852521 caataatgaagtaagtatttgaaag--tgttgaaaagagagttttgctagc 33852473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 401 - 572
Target Start/End: Original strand, 37489903 - 37490074
Alignment:
Q  401 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 500  Q
    ||||||||||||||| ||||||||||| |||||    |||||| |   ||||| | | |||| |||||||| |||| ||  |||||||||||  || | |    
T  37489903 aatgctaaggacactctcttttcaacattctctcaaacactcacttgtttattggtttaaatgaatgtatgtcccaccatattaagtggaactcatctcc 37490002  T
Q  501 aaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgt 572  Q
    ||||||||||||| ||| | |||||| |||||||| | || |||||| || ||| |||||||||||||||||    
T  37490003 aaagtgtgagaccgaccttcatttaaaccaataagtaagtgagtgtttgagagagtgttgaaaagagagtgt 37490074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 308 - 396
Target Start/End: Complemental strand, 6688369 - 6688283
Alignment:
Q  308 agtgaaaattattaagtgattataagagggtgaatgagagaaatttttaggggatgttcttgaagagtattgggagctaaatttattgg 396  Q
    |||||||||  || || |||||||||| ||| ||||||||||||||  |||||||||||||| ||| ||||| ||||||||||||||||    
T  6688369 agtgaaaatctttgagcgattataagatggtaaatgagagaaattt--aggggatgttcttggagaatattgagagctaaatttattgg 6688283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 398 - 579
Target Start/End: Complemental strand, 24539305 - 24539124
Alignment:
Q  398 agaaatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatt 497  Q
    ||||||||||  |||||| ||||||  ||||||||| |  |||||| ||| ||||| ||| |||||||| |||| |||| |||||||  ||||  | |||    
T  24539305 agaaatgctagcgacactctcttttggacactctctctaacactcactcttttattggataaaatcaatatatgtcccaccactttatatggattccatt 24539206  T
Q  498 tacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    | |||| |||  |||||||  |||||||| ||||| |||  || ||||||||| ||| |||  |||||||||||||||||||    
T  24539205 tccaaaatgtatgacccacattgatttaacccaatgagagagtgagtgttagagagagtgtccaaaagagagtgttgctagc 24539124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 449 - 580
Target Start/End: Complemental strand, 38065449 - 38065327
Alignment:
Q  449 ttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgtta 548  Q
    ||||| |||||||| |||||||  |||| |||||||||||||||| ||||         |||||||||| |||||||| |||||||||| || ||| ||     
T  38065449 ttattggatgaaattaatgtatctcccaccactttaagtggaacccattt---------gagacccaccttgatttaaaccaataagaaagtgagtattt 38065359  T
Q  549 gaaagattgttgaaaagagagtgttgctagcg 580  Q
    || ||| ||||||| |||||||||||||||||    
T  38065358 gagagagtgttgaagagagagtgttgctagcg 38065327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 446 - 579
Target Start/End: Original strand, 27888328 - 27888460
Alignment:
Q  446 ctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtg 545  Q
    |||| ||| ||| ||||||||||||| |||| ||||||  ||||   | ||||  ||||||| |||||||| ||||||||| |||||||||  || ||||    
T  27888328 ctctcattggataaaatcaatgtatgtcccaccactttgtgtgggttcaatttttaaagtgt-agacccacaatgatttaaaccaataagagagtgagtg 27888426  T
Q  546 ttagaaagattgttgaaaagagagtgttgctagc 579  Q
    ||||| ||| || | |||||||||||||||||||    
T  27888427 ttagagagagtgctcaaaagagagtgttgctagc 27888460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 440 - 493
Target Start/End: Complemental strand, 32721067 - 32721014
Alignment:
Q  440 ctcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacc 493  Q
    |||||||| ||||| ||| ||||||||||||||||||||| |||||||||||||    
T  32721067 ctcattcttttattggataaaatcaatgtatgacccatcaatttaagtggaacc 32721014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 419 - 579
Target Start/End: Original strand, 22189958 - 22190117
Alignment:
Q  419 ttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccacca 518  Q
    ||||||||||||||| |  |||||| ||| ||||| ||||||||||||||||| |||| ||||||  ||||   | |||| |||||||| |||||| | |    
T  22189958 ttttcaacactctctctagcactcactcttttattggatgaaatcaatgtatggcccaccactttgtgtgggttcaattttcaaagtgt-agacccgcaa 22190056  T
Q  519 tgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    |||||||| |||||||    || ||| ||||| ||  |||| |||||||||||||| ||||    
T  22190057 tgatttaaaccaataaacgagtgagtattagagagggtgttcaaaagagagtgttgttagc 22190117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 418 - 536
Target Start/End: Complemental strand, 12263598 - 12263481
Alignment:
Q  418 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccacc 517  Q
    |||||||||||||||| | |||  || ||| ||||  |||| |||||||||||| |||||||||||  || | | | |||| |||||||| ||||||||     
T  12263598 cttttcaacactctctctatcatccactcttttatcggatggaatcaatgtatgtcccatcactttgtgtaggatcaattttcaaagtgt-agacccaca 12263500  T
Q  518 atgatttaagccaataaga 536  Q
    ||||||||| |||||||||    
T  12263499 atgatttaaaccaataaga 12263481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 495 - 577
Target Start/End: Complemental strand, 25686920 - 25686839
Alignment:
Q  495 atttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgcta 577  Q
    |||| |||||||| |||||||| ||||||||| |||||||||   | ||| ||||||||| |||| |||||||||||||||||    
T  25686920 attttcaaagtgt-agacccacaatgatttaaaccaataagataatgagtattagaaagaatgttcaaaagagagtgttgcta 25686839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 438 - 507
Target Start/End: Complemental strand, 17354669 - 17354600
Alignment:
Q  438 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgt 507  Q
    |||||||||| ||||| ||||||||||||||||| |||| ||||||| ||||   |||||| ||||||||    
T  17354669 cactcattcttttattggatgaaatcaatgtatgtcccaccactttatgtgggttctatttccaaagtgt 17354600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 398 - 579
Target Start/End: Original strand, 17749692 - 17749873
Alignment:
Q  398 agaaatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatt 497  Q
    ||||||||||  |||||| | ||||  ||||||||| |  |||||| ||| ||||| ||| |||||||| |||| |||| |||||||  ||||    |||    
T  17749692 agaaatgctagcgacactcttttttggacactctctctaacactcactcttttattggataaaatcaatatatgtcccaccactttatatggatttcatt 17749791  T
Q  498 tacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    | |||| |||  |||||||  |||||||| ||||| |||  || ||||||||| ||| |||  |||||||||||||||||||    
T  17749792 tccaaaatgtatgacccacattgatttaacccaatgagagagtgagtgttagagagagtgtccaaaagagagtgttgctagc 17749873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 417 - 526
Target Start/End: Original strand, 39523592 - 39523701
Alignment:
Q  417 tcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccac 516  Q
    ||||||||||||||| | |  |||||||||| ||||| |||||||  |  ||||| | || |||||||||||||||| |||| |||  ||||||| ||||    
T  39523592 tcttttcaacactctgtctaacactcattcttttattggatgaaactagggtatgtctcaccactttaagtggaacccatttccaatatgtgagatccac 39523691  T
Q  517 catgatttaa 526  Q
    | ||||||||    
T  39523692 cttgatttaa 39523701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 419 - 483
Target Start/End: Original strand, 7775019 - 7775083
Alignment:
Q  419 ttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcacttt 483  Q
    ||||||||||||||| |  |||||| ||| ||||| ||||||||||||||||| |||| ||||||    
T  7775019 ttttcaacactctctatagcactcactcttttattggatgaaatcaatgtatgtcccaccacttt 7775083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 446 - 534
Target Start/End: Original strand, 24681643 - 24681731
Alignment:
Q  446 ctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataa 534  Q
    |||| |||||||||||| |||||||| |||||||||||||||   ||  ||||  ||||||||||||||  | ||||||||| ||||||    
T  24681643 ctctcattagatgaaattaatgtatgtcccatcactttaagtaagactcatttttaaagtgtgagacccgtcttgatttaagtcaataa 24681731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 447 - 579
Target Start/End: Original strand, 41906353 - 41906485
Alignment:
Q  447 tcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgt 546  Q
    ||||||| |||||||| ||| |||| || |  ||||||||||||||  ||||  ||||||||||||  ||  |||||||| ||||||| ||  | ||| |    
T  41906353 tcttatttgatgaaattaatatatgtcctactactttaagtggaactcatttttaaagtgtgagacttacattgatttaaaccaataaaaaattgagtat 41906452  T
Q  547 tagaaagattgttgaaaagagagtgttgctagc 579  Q
    | ||||||  |||||||||||||||||| ||||    
T  41906453 ttgaaagagcgttgaaaagagagtgttgttagc 41906485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 579
Target Start/End: Original strand, 27949373 - 27949451
Alignment:
Q  500 caaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    |||||||| |||||||| ||||||||| | |||||||  || ||| ||||| ||| |||| |||||||||||||||||||    
T  27949373 caaagtgt-agacccacaatgatttaaactaataagagagtgagtattagagagagtgttcaaaagagagtgttgctagc 27949451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 449 - 534
Target Start/End: Complemental strand, 11789904 - 11789821
Alignment:
Q  449 ttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataa 534  Q
    |||||||||||||  |||||||| |||| |||||| |||||||   |||| |||  ||||||||||||| |||||||| |||||||    
T  11789904 ttattagatgaaagtaatgtatgtcccaccacttttagtggaattcatttccaa--tgtgagacccaccttgatttaaaccaataa 11789821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 476
Target Start/End: Complemental strand, 19422996 - 19422938
Alignment:
Q  418 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgaccca 476  Q
    |||||||||||||||| | ||||||| ||| | ||| ||||||||||||||||| ||||    
T  19422996 cttttcaacactctctctatcactcactctttcattggatgaaatcaatgtatgtccca 19422938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 642 - 688
Target Start/End: Original strand, 26639342 - 26639388
Alignment:
Q  642 tagaaattagatatgttcttggagagtttgttgaatctaatttcttg 688  Q
    |||||||||| |||||||||||||||||||||||   ||||||||||    
T  26639342 tagaaattaggtatgttcttggagagtttgttgatgttaatttcttg 26639388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 483
Target Start/End: Complemental strand, 44511098 - 44511033
Alignment:
Q  418 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcacttt 483  Q
    |||||||||||||||| |  |||||| | | ||||| ||||||||||||||||| | |||||||||    
T  44511098 cttttcaacactctctctagcactcacttttttattggatgaaatcaatgtatgtctcatcacttt 44511033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 9e-35; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 409 - 532
Target Start/End: Complemental strand, 45525047 - 45524924
Alignment:
Q  409 ggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtg 508  Q
    ||||||| ||||||||||||||||||   |||||||| ||||||| ||| |||||||||||||||||| |||||| ||||||||| |||| |||||||||    
T  45525047 ggacactctcttttcaacactctcttcaacactcattttcttattggataaaatcaatgtatgacccaccactttgagtggaacccatttccaaagtgtg 45524948  T
Q  509 agacccaccatgatttaagccaat 532  Q
    | ||||||||||||||||||||||    
T  45524947 aaacccaccatgatttaagccaat 45524924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 398 - 572
Target Start/End: Original strand, 24683569 - 24683743
Alignment:
Q  398 agaaatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatt 497  Q
    |||||||||||||||||| |||||||||||||||||||   ||||| | ||| |||   | ||| |||||| ||||||| |||||||||||||||| |||    
T  24683569 agaaatgctaaggacactctcttttcaacactctctttaatactcactttctaattgacttaaaccaatgtgtgacccaccactttaagtggaacccatt 24683668  T
Q  498 tacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgt 572  Q
    | |||| ||||||||||| |||||||||||||||| |||| || |||||| || | | |||||||||||||||||    
T  24683669 tccaaaatgtgagacccatcatgatttaagccaatcagaaagtgagtgttggagatagtgttgaaaagagagtgt 24683743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 438 - 576
Target Start/End: Complemental strand, 37927615 - 37927477
Alignment:
Q  438 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaa 537  Q
    ||||||||||||| || ||||||| ||||||||||| ||||||||||||| | | |||||| |||| |||||||| ||| ||||||||||||||||| ||    
T  37927615 cactcattctcttgttggatgaaaccaatgtatgactcatcactttaagtagtatctatttccaaaatgtgagactcactatgatttaagccaataaaaa 37927516  T
Q  538 tgtaagtgttagaaagattgttgaaaagagagtgttgct 576  Q
      | ||| || || ||| |||| ||||||||||| ||||    
T  37927515 aatgagtattggagagaatgttaaaaagagagtgctgct 37927477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 411 - 575
Target Start/End: Complemental strand, 11574200 - 11574036
Alignment:
Q  411 acactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgag 510  Q
    ||||| |||||| ||||||||||||  |||||| ||||||| |||  ||||  | |||||| ||||  | |||||||| |||| |||| ||| |||||||    
T  11574200 acactctcttttgaacactctctttaacactcactctcttaatagccgaaactagtgtatgtcccactattttaagtgaaaccaattttcaatgtgtgag 11574101  T
Q  511 acccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgc 575  Q
    ||||||| ||||||||||||||||  | || |||||  |||||| ||||||||||| ||||||||    
T  11574100 acccaccttgatttaagccaataatgaggtgagtgtatgaaagagtgttgaaaagaaagtgttgc 11574036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 447 - 534
Target Start/End: Complemental strand, 9009075 - 9008988
Alignment:
Q  447 tcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataa 534  Q
    ||||||| | |||||| |||||||| ||||||||||||||||||||| |||| ||||||||||||| |||  ||||||||||||||||    
T  9009075 tcttatttggtgaaattaatgtatgtcccatcactttaagtggaacccattttcaaagtgtgagactcacattgatttaagccaataa 9008988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 438 - 516
Target Start/End: Complemental strand, 28485523 - 28485445
Alignment:
Q  438 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccac 516  Q
    |||| ||||||||||| |||||||| |||||||| |||| |||||||||||||||| |||| |||||||||||||||||    
T  28485523 cacttattctcttattggatgaaattaatgtatgtcccaccactttaagtggaacccatttccaaagtgtgagacccac 28485445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 443 - 537
Target Start/End: Original strand, 41668592 - 41668686
Alignment:
Q  443 attctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaa 537  Q
    ||||| ||||||||||||||||||||||||   ||||||||||||| |||  ||||| ||||||||||| ||||||| |||||||  ||||||||    
T  41668592 attcttttattagatgaaatcaatgtatgatttatcactttaagtgaaactcatttataaagtgtgagatccaccattatttaagttaataagaa 41668686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 401 - 579
Target Start/End: Complemental strand, 45218694 - 45218518
Alignment:
Q  401 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 500  Q
    ||||||| ||||||| ||||||  |||||||||    |||||  ||| ||||| |||||||||||||  || |||| |||||||||||||||| |||| |    
T  45218694 aatgctagggacactctcttttatacactctctaa--cactcgctcttttattggatgaaatcaatgcgtgtcccaccactttaagtggaacccatttcc 45218597  T
Q  501 aaagtgtgagacccaccatgatttaagccaat-aagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    ||| ||||||  ||||| |||||||| ||||| ||||||   |||||| |  ||| ||||||||||||||||||||||||    
T  45218596 aaaatgtgaggaccaccttgatttaaaccaataaagaat-agagtgtttgggagagtgttgaaaagagagtgttgctagc 45218518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 449 - 579
Target Start/End: Complemental strand, 13407455 - 13407325
Alignment:
Q  449 ttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgtta 548  Q
    ||||| ||| ||||||||||||| |||| || |||||||||   |||||| ||||||||  |||||||  |||||||| ||||| |||   | |||||||    
T  13407455 ttattggataaaatcaatgtatgtcccaccattttaagtgggttctattttcaaagtgtatgacccacattgatttaacccaatgagagaatgagtgtta 13407356  T
Q  549 gaaagattgttgaaaagagagtgttgctagc 579  Q
    || ||| |||| |||||||||||||||||||    
T  13407355 gagagagtgttcaaaagagagtgttgctagc 13407325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 438 - 547
Target Start/End: Complemental strand, 9953811 - 9953702
Alignment:
Q  438 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaa 537  Q
    |||||| ||||||||  |||||||| ||||| || |||| |||||||||||||||  |||| ||||||||||||  |||| |||||||| ||||||| ||    
T  9953811 cactcactctcttatgggatgaaattaatgtgtgtcccaccactttaagtggaactcatttccaaagtgtgagattcaccttgatttaaaccaataaaaa 9953712  T
Q  538 tgtaagtgtt 547  Q
     || ||||||    
T  9953711 agtgagtgtt 9953702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 490 - 579
Target Start/End: Original strand, 38091440 - 38091529
Alignment:
Q  490 aacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    |||| |||| |||||| ||||||| | |||||||||||||||| |||| || |||||| || ||| ||||||||||||| ||||||||||    
T  38091440 aacccatttccaaagtatgagacctatcatgatttaagccaattagaaagtgagtgttggagagagtgttgaaaagagaatgttgctagc 38091529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 438 - 577
Target Start/End: Original strand, 29011091 - 29011230
Alignment:
Q  438 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaa 537  Q
    |||||||||||||| | |||||||  |||||||| || | |||||| | ||||||| |||| ||||||||| ||| ||||  ||||||| |||||||  |    
T  29011091 cactcattctcttaatggatgaaactaatgtatgtcctaccactttgaatggaacccatttccaaagtgtgtgactcacctcgatttaaaccaataaaga 29011190  T
Q  538 tgtaagtgttagaaagattgttgaaaagagagtgttgcta 577  Q
     || |||||| || ||| ||||||||| ||||| ||||||    
T  29011191 agtgagtgtttgagagagtgttgaaaatagagtattgcta 29011230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 449 - 528
Target Start/End: Original strand, 42474010 - 42474089
Alignment:
Q  449 ttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagc 528  Q
    ||||| ||| |||| ||||| ||||||| ||||||||||||||   |||| ||||||||||||||||| |||||||||||    
T  42474010 ttattggataaaattaatgtttgacccaccactttaagtggaattcattttcaaagtgtgagacccactatgatttaagc 42474089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 410 - 515
Target Start/End: Original strand, 24184377 - 24184482
Alignment:
Q  410 gacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtga 509  Q
    |||||| ||||||||||||||| |||   || || ||| ||||| || ||||| |||| ||| ||||||||||||| ||||| | |||| ||||||||||    
T  24184377 gacactctcttttcaacactctttttaatacgcactcttttattggaagaaattaatgcatgtcccatcactttaaatggaatccattttcaaagtgtga 24184476  T
Q  510 gaccca 515  Q
    ||||||    
T  24184477 gaccca 24184482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 438 - 537
Target Start/End: Original strand, 14636091 - 14636190
Alignment:
Q  438 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaa 537  Q
    |||||||| ||||||| | ||||| || | ||||||||| || ||| | ||||| | ||||  ||||||||||||||| ||| |||||||||||||||||    
T  14636091 cactcattttcttattgggtgaaaccattatatgacccaccattttgaatggaaaccatttttaaagtgtgagacccatcattatttaagccaataagaa 14636190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 449 - 512
Target Start/End: Complemental strand, 27799337 - 27799274
Alignment:
Q  449 ttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagac 512  Q
    ||||| |||||||  |||||||| |||| ||||||||||||||||||||| ||| |||||||||    
T  27799337 ttatttgatgaaactaatgtatgtcccaccactttaagtggaacctatttccaatgtgtgagac 27799274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 495 - 579
Target Start/End: Original strand, 16983489 - 16983572
Alignment:
Q  495 atttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    |||| |||||||| |||| ||| ||||||||| |||||||||  || ||| ||||| ||| |||| |||||||||||||||||||    
T  16983489 attttcaaagtgt-agactcacaatgatttaaaccaataagagagtgagtattagagagagtgttcaaaagagagtgttgctagc 16983572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 536
Target Start/End: Complemental strand, 9952919 - 9952802
Alignment:
Q  418 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccacc 517  Q
    |||||||||||||||| |  |||||||| | ||||| ||||||||||||| ||| |||| ||||||  |||    | |||| |||||||| | ||||||     
T  9952919 cttttcaacactctctctagcactcatttttttattggatgaaatcaatgcatgtcccaccactttgtgtgagttcaattttcaaagtgt-aaacccaca 9952821  T
Q  518 atgatttaagccaataaga 536  Q
    ||||||||| |||||||||    
T  9952820 atgatttaaaccaataaga 9952802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 398 - 512
Target Start/End: Complemental strand, 32023025 - 32022911
Alignment:
Q  398 agaaatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatt 497  Q
    ||||||| ||||||||||   |||| ||||||||||||  || ||| ||| |||||  || |||| |||||||| | || ||||| |||| |||||||||    
T  32023025 agaaatgttaaggacactcatttttaaacactctctttaacattcaatcttttattgaataaaattaatgtatgcctcaccacttcaagtagaacctatt 32022926  T
Q  498 tacaaagtgtgagac 512  Q
    |  ||||||||||||    
T  32022925 tttaaagtgtgagac 32022911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 450 - 579
Target Start/End: Original strand, 5979930 - 5980057
Alignment:
Q  450 tattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttag 549  Q
    |||| ||||| ||||||||||| |||| ||||||  ||||   | |||| |||||||||| || ||| ||| ||||| |||||||||  || ||| ||||    
T  5979930 tattggatgagatcaatgtatgtcccaccactttgtgtgggttcaattttcaaagtgtga-actcacaatggtttaa-ccaataagagagtgagtattag 5980027  T
Q  550 aaagattgttgaaaagagagtgttgctagc 579  Q
    | ||| |||| |||||||||||||||||||    
T  5980028 agagagtgttcaaaagagagtgttgctagc 5980057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 478 - 579
Target Start/End: Complemental strand, 12212227 - 12212126
Alignment:
Q  478 cactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgcta 577  Q
    ||||||| |||| ||| |||| ||||||||  |||||||  |||||| | |||| || |  || | ||||||| ||| ||||||||||||||||||||||    
T  12212227 cactttatgtgggacccatttccaaagtgtaggacccacattgatttcacccaagaaaagagtgaatgttagagagaatgttgaaaagagagtgttgcta 12212128  T
Q  578 gc 579  Q
    ||    
T  12212127 gc 12212126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 478 - 579
Target Start/End: Complemental strand, 12456655 - 12456554
Alignment:
Q  478 cactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgcta 577  Q
    ||||||| |||| ||| |||| ||||||||  |||||||  |||||| | |||| || |  || | ||||||| ||| ||||||||||||||||||||||    
T  12456655 cactttatgtgggacccatttccaaagtgtaggacccacattgatttcacccaagaaaagagtgaatgttagagagaatgttgaaaagagagtgttgcta 12456556  T
Q  578 gc 579  Q
    ||    
T  12456555 gc 12456554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 417 - 534
Target Start/End: Complemental strand, 13105483 - 13105367
Alignment:
Q  417 tcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccac 516  Q
    |||||||| ||||||||||  ||||   ||| |||||||||||||  | |||||| ||||  | |||||| |||||| |||| ||| ||||||||||||     
T  13105483 tcttttcagcactctctttaacacttgctcttttattagatgaaactagtgtatgtcccacgattttaag-ggaacccatttccaatgtgtgagacccat 13105385  T
Q  517 catgatttaagccaataa 534  Q
    | |||||||| |||||||    
T  13105384 cttgatttaaaccaataa 13105367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 483
Target Start/End: Original strand, 32072115 - 32072180
Alignment:
Q  418 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcacttt 483  Q
    |||||||||||||||| |  |||||| ||| ||||| |||||||| |||||||| |||| ||||||    
T  32072115 cttttcaacactctctctagcactcactcttttattggatgaaatgaatgtatgtcccaccacttt 32072180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 686
Target Start/End: Complemental strand, 33655452 - 33655407
Alignment:
Q  641 atagaaattagatatgttcttggagagtttgttgaatctaatttct 686  Q
    ||||||||||||| ||||||| |||||||||||||| || ||||||    
T  33655452 atagaaattagatttgttcttagagagtttgttgaagctgatttct 33655407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 554
Target Start/End: Original strand, 35188425 - 35188506
Alignment:
Q  473 cccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaaga 554  Q
    |||| ||||||| |||| |||||||| |||||||||||||||||  | |||| | || ||||||  || |||||||||||||    
T  35188425 cccaccactttacgtgggacctatttccaaagtgtgagacccacattaatttcaccctataagagagtgagtgttagaaaga 35188506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 401 - 579
Target Start/End: Original strand, 296837 - 297015
Alignment:
Q  401 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 500  Q
    ||||||| ||||||| ||||||||||||||||| |  |||||| ||||||||| |||||||  | |||||| |||| ||| |||||||||||| |||| |    
T  296837 aatgctagggacactttcttttcaacactctctctaacactcactctcttattggatgaaactagtgtatgtcccaccaccttaagtggaacccatttcc 296936  T
Q  501 aaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    || |||||||||||||| | |||||| |||||||  | || |||||| || ||| ||||||||||||||||||||||||    
T  296937 aatgtgtgagacccaccttcatttaaaccaataatgaagtgagtgtttgagagagtgttgaaaagagagtgttgctagc 297015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 9e-32; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 409 - 579
Target Start/End: Original strand, 28274795 - 28274965
Alignment:
Q  409 ggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtg 508  Q
    ||||||| ||||||||||||||||| |  |||||| ||||||||| |||||||  | |||||| |||||||| |||||||||||| |||| ||| |||||    
T  28274795 ggacactctcttttcaacactctctctaacactcactctcttattggatgaaactagtgtatgtcccatcaccttaagtggaacccatttccaatgtgtg 28274894  T
Q  509 agacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    ||||||||| |||||||| ||||||| || ||  |||||  | ||| |||||||||||||||||| |||||    
T  28274895 agacccaccttgatttaaaccaataataaagtgggtgtttaagagagtgttgaaaagagagtgttactagc 28274965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 398 - 572
Target Start/End: Original strand, 18473647 - 18473821
Alignment:
Q  398 agaaatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatt 497  Q
    ||||||||||  |||||| ||||||||||||||||||   |||||| | ||| |||   | ||| |||| | ||||||  |||||||||||||||| |||    
T  18473647 agaaatgctagagacactctcttttcaacactctcttcaacactcactttctaattgacttaaaccaatatgtgacccgccactttaagtggaacccatt 18473746  T
Q  498 tacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgt 572  Q
    | ||||||||||||||||||||||||||||||||| |||| || ||||||  | ||| |||||||||||||||||    
T  18473747 ttcaaagtgtgagacccaccatgatttaagccaattagaaagtgagtgttgaagagagtgttgaaaagagagtgt 18473821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 398 - 578
Target Start/End: Original strand, 18157036 - 18157214
Alignment:
Q  398 agaaatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatt 497  Q
    |||||||||| ||||||| ||||||||||||||||| |  ||| || | | ||||| |||||||| |||||||| |||| |||||||||||||||  |||    
T  18157036 agaaatgctagggacactctcttttcaacactctctctaacacccacttttttattggatgaaattaatgtatgtcccaccactttaagtggaacacatt 18157135  T
Q  498 tacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctag 578  Q
    | |||||||||||||||| | ||| |||| |||||||| | || ||| || || ||| |||||||||||||||||||||||    
T  18157136 tccaaagtgtgagaccca-cttga-ttaaaccaataaggaagtgagtatttgagagaatgttgaaaagagagtgttgctag 18157214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 502 - 574
Target Start/End: Original strand, 46792979 - 46793051
Alignment:
Q  502 aagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttg 574  Q
    ||||||||||||||||||||||||||||||||| || |||||||||| ||||| ||||||||||| |||||||    
T  46792979 aagtgtgagacccaccatgatttaagccaataaaaaagtaagtgttaaaaagagtgttgaaaagatagtgttg 46793051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 409 - 579
Target Start/End: Complemental strand, 18953335 - 18953166
Alignment:
Q  409 ggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtg 508  Q
    ||||||||||| ||||| ||| ||||   |||||||| | ||||| ||||||| |||||||||| ||| || |||| ||||||||  |||  ||||||||    
T  18953335 ggacactatctcttcaagactttcttcaacactcatttttttattggatgaaaccaatgtatgatccaccatttta-gtggaacccgtttctaaagtgtg 18953237  T
Q  509 agacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    ||| |||||||||||||||| |||||||| || |||| |||| | | |||| | |||||| ||||||||||    
T  18953236 agatccaccatgatttaagcaaataagaaggtgagtggtagagatactgttaagaagagaatgttgctagc 18953166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 401 - 574
Target Start/End: Original strand, 1468443 - 1468612
Alignment:
Q  401 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 500  Q
    ||||||| ||||||| || ||||||||||||||    |||||| ||||||||| ||| |||  | ||||||   |||||||||||||||||||||||| |    
T  1468443 aatgctagggacactctcatttcaacactctctaa--cactcactctcttattggattaaactagtgtatgtttcatcactttaagtggaacctatttcc 1468540  T
Q  501 aaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttg 574  Q
    || |||||||||||||| |||||||| | |||||  | || |||||| |  ||| |||||| ||||||||||||    
T  1468541 aatgtgtgagacccaccttgatttaaacaaataatgaggtgagtgtttg--agagtgttgacaagagagtgttg 1468612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 401 - 547
Target Start/End: Original strand, 21977188 - 21977334
Alignment:
Q  401 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 500  Q
    ||||||| ||||| | ||||||||||||||||| |   ||||| | ||||||| |||||||  |||||||| ||||  ||||||||||||||| |||| |    
T  21977188 aatgctagggacattctcttttcaacactctctctaaaactcactttcttatttgatgaaactaatgtatgtcccactactttaagtggaacccatttcc 21977287  T
Q  501 aaagtgtgagacccaccatgatttaagccaataagaatgtaagtgtt 547  Q
    || |||||||||| | | |||||||| ||||||| || || ||||||    
T  21977288 aatgtgtgagacctatcttgatttaaaccaataataaagtgagtgtt 21977334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 463 - 532
Target Start/End: Original strand, 11247833 - 11247902
Alignment:
Q  463 caatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaat 532  Q
    |||||| ||| ||| || ||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  11247833 caatgtgtgatccaccattttaagtggaacccattttcaaagtgtgagacccaccatgatttaagccaat 11247902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 445 - 534
Target Start/End: Complemental strand, 5602695 - 5602606
Alignment:
Q  445 tctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataa 534  Q
    ||||||||| |||||||| ||| |||| |||| ||||||||||| ||| ||||| |||||||||||||||||  | |||||| |||||||    
T  5602695 tctcttattggatgaaattaatatatgtcccaccactttaagtgaaacttatttccaaagtgtgagacccactttaatttaaaccaataa 5602606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 398 - 579
Target Start/End: Complemental strand, 13114852 - 13114671
Alignment:
Q  398 agaaatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatt 497  Q
    ||||||||||  |||||| ||||||  ||||||||| |  |||||| ||| ||||||||| |||||||| |||| |||| |||||||  ||||  | |||    
T  13114852 agaaatgctagcgacactctcttttggacactctctctaacactcactcttttattagataaaatcaatatatgtcccaccactttatatggattccatt 13114753  T
Q  498 tacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    | |||| |||   ||||||  |||||||| ||||| |||  || ||||||||| ||| |||  |||||||||||||||||||    
T  13114752 tccaaaatgtataacccacattgatttaacccaatgagatagtgagtgttagagagagtgtccaaaagagagtgttgctagc 13114671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 438 - 579
Target Start/End: Complemental strand, 21970420 - 21970279
Alignment:
Q  438 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaa 537  Q
    |||||| |||||||||  ||||||  | |||||| |||| |||||||||||||||| |||| ||| |||||||||||| | |||||||| |||||||  |    
T  21970420 cactcactctcttattgaatgaaactagtgtatgtcccaccactttaagtggaacccattttcaatgtgtgagacccatcttgatttaaaccaataatga 21970321  T
Q  538 tgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
     || ||| ||    ||| |||| |||||||||||||||||||    
T  21970320 agtgagtatttatgagaatgtttaaaagagagtgttgctagc 21970279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 438 - 537
Target Start/End: Complemental strand, 15741950 - 15741851
Alignment:
Q  438 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaa 537  Q
    ||||||||  |||||| ||| ||| |||||||||| | ||||||||||||| |||  |||| ||||||||||||||| | ||||||||||| ||| ||||    
T  15741950 cactcattaacttattggataaaaccaatgtatgatcgatcactttaagtgaaactcatttccaaagtgtgagacccgctatgatttaagcaaattagaa 15741851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 401 - 511
Target Start/End: Complemental strand, 14341100 - 14340990
Alignment:
Q  401 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 500  Q
    |||| ||| |||||| ||||||||||||||||| |  |||||||| | ||||| |||||||  ||| |||| |||| |||||||||||||||| |||| |    
T  14341100 aatgttaatgacactttcttttcaacactctctctaacactcatttttttattggatgaaactaatatatgtcccaccactttaagtggaacccatttcc 14341001  T
Q  501 aaagtgtgaga 511  Q
    ||  |||||||    
T  14341000 aatatgtgaga 14340990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 459 - 579
Target Start/End: Complemental strand, 30679032 - 30678913
Alignment:
Q  459 aaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgt 558  Q
    ||||||||||||| |||| ||||||  ||||   | |||| |||||||| |||| ||| |||||||||||||||||||  || ||||||||| ||| ||     
T  30679032 aaatcaatgtatgtcccaccactttgtgtgggttcaattttcaaagtgt-agactcacaatgatttaagccaataagagagtgagtgttagagagagtgc 30678934  T
Q  559 tgaaaagagagtgttgctagc 579  Q
    | |||| ||||||||||||||    
T  30678933 tcaaaaaagagtgttgctagc 30678913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 464 - 532
Target Start/End: Original strand, 33234470 - 33234538
Alignment:
Q  464 aatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaat 532  Q
    |||||||||| || ||||||||||| |||| ||||  ||||||||||| ||||||| ||||||||||||    
T  33234470 aatgtatgactcaccactttaagtgaaacccatttctaaagtgtgagatccaccataatttaagccaat 33234538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 401 - 513
Target Start/End: Complemental strand, 40126018 - 40125906
Alignment:
Q  401 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 500  Q
    |||| |||||||||||| |||| ||| || |||||  || | ||| | ||||| ||| |||  ||||||||||||| |||||||||||||| | |||| |    
T  40126018 aatgttaaggacactatttttttaacgctttctttaacatttatttttttattggataaaactaatgtatgacccaccactttaagtggaatccatttcc 40125919  T
Q  501 aaagtgtgagacc 513  Q
    |||||||||||||    
T  40125918 aaagtgtgagacc 40125906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 461 - 534
Target Start/End: Original strand, 2592965 - 2593038
Alignment:
Q  461 atcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataa 534  Q
    |||| |||||||| || |||||||||||||| | ||||  ||||||||||||||||| | ||||||| ||||||    
T  2592965 atcagtgtatgactcaccactttaagtggaatccatttttaaagtgtgagacccacctttatttaagtcaataa 2593038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 464 - 532
Target Start/End: Original strand, 7549649 - 7549718
Alignment:
Q  464 aatgtatgacccatcactttaagtggaacctatttac-aaagtgtgagacccaccatgatttaagccaat 532  Q
    ||||||||||| | |||||||||||||||  |||| | |||||||||||| |||||| ||||||||||||    
T  7549649 aatgtatgaccaaccactttaagtggaacacattttccaaagtgtgagactcaccataatttaagccaat 7549718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 495 - 573
Target Start/End: Complemental strand, 4817256 - 4817179
Alignment:
Q  495 atttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgtt 573  Q
    |||| |||||||||||| ||||||  |||||||||||||| ||  |||||||| || ||| |||| |||||||||||||    
T  4817256 attttcaaagtgtgagatccaccacaatttaagccaataa-aaaataagtgttggagagaatgttaaaaagagagtgtt 4817179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 412 - 534
Target Start/End: Original strand, 25010005 - 25010126
Alignment:
Q  412 cactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgaga 511  Q
    |||| |||||||||||||  |||   |||||||||||||||| ||||||| || ||||| ||| |  | ||| | ||||||| ||||  |||||||||||    
T  25010005 cactctcttttcaacacttccttcaacactcattctcttattggatgaaaccattgtattacctactattttgaatggaacccatttctaaagtgtgaga 25010104  T
Q  512 cccaccatgatttaagccaataa 534  Q
     |||| || ||||||||||||||    
T  25010105 -ccactataatttaagccaataa 25010126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 518 - 579
Target Start/End: Complemental strand, 39974263 - 39974202
Alignment:
Q  518 atgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    ||||||||| |||||||||  || ||| ||||||||| |||| |||||||||||||| ||||    
T  39974263 atgatttaaaccaataagagagtgagtattagaaagaatgttcaaaagagagtgttgttagc 39974202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 419 - 577
Target Start/End: Complemental strand, 10798438 - 10798280
Alignment:
Q  419 ttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccacca 518  Q
    ||||||||||||| |||   |||||||||| |||| ||| ||| |||||||||||||| |||||||||||||||  |||| |||||| |||||||||| |    
T  10798438 ttttcaacactctttttaagactcattctcgtattggataaaaccaatgtatgacccaccactttaagtggaactcatttccaaagtatgagacccacaa 10798339  T
Q  519 tgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgcta 577  Q
    | |||||||||||| | || |||| ||||  ||||| |||||||||| |||||||||||    
T  10798338 taatttaagccaattaaaaagtaaatgttgaaaagagtgttgaaaagtgagtgttgcta 10798280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 417 - 579
Target Start/End: Complemental strand, 22813435 - 22813273
Alignment:
Q  417 tcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccac 516  Q
    |||||| |||||||||||   |||||||| ||| ||| ||||||  |||||||||||||| |||||| ||||||||| ||||  |||||||||||| |||    
T  22813435 tctttttaacactctcttgaacactcattttctcattggatgaatgcaatgtatgacccaccacttttagtggaacccatttcgaaagtgtgagactcac 22813336  T
Q  517 catgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    ||||||||||||||||||||| |  | ||  | ||||| |||||||||||||| | |||||||    
T  22813335 catgatttaagccaataagaaggggattggaaaaaagagtgttgaaaagagagcgctgctagc 22813273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 401 - 579
Target Start/End: Complemental strand, 7640774 - 7640596
Alignment:
Q  401 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 500  Q
    ||||||| ||||||| |||||||||||||| || |  ||||   | ||||||| |||||||| |||||||| || | ||| ||||||||||||||||| |    
T  7640774 aatgctagggacactctcttttcaacactcactctaacacttgctttcttattggatgaaattaatgtatgtcctaccacattaagtggaacctatttcc 7640675  T
Q  501 aaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
     ||||||||||| |||| ||||| || |||||||| | || |||||| |  ||| |||||||||||||||||| |||||    
T  7640674 taagtgtgagactcaccttgattgaaaccaataaggaagtgagtgtttgtgagagtgttgaaaagagagtgttactagc 7640596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 398 - 547
Target Start/End: Original strand, 7791826 - 7791975
Alignment:
Q  398 agaaatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatt 497  Q
    ||||||| || ||||||| ||||||||||||| ||||   | |||| | ||| ||| | | ||| |||||| ||||||| |||||||||||||| |||||    
T  7791826 agaaatgttagggacactctcttttcaacactttcttcaacgctcactttctaattggcttaaaccaatgtgtgacccaccactttaagtggaatctatt 7791925  T
Q  498 tacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgtt 547  Q
    | |||||||||||||||||  |||||||||||||| |||| || ||||||    
T  7791926 tccaaagtgtgagacccactgtgatttaagccaattagaaagtgagtgtt 7791975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 401 - 572
Target Start/End: Complemental strand, 49720181 - 49720010
Alignment:
Q  401 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 500  Q
    |||||||||||||||  ||||||||||||||||    |||||| |  |||||| ||| |||| |||||||  |||| || ||||||||||||| |||| |    
T  49720181 aatgctaaggacactcacttttcaacactctctcaaacactcacttgcttattggattaaatgaatgtatatcccaccattttaagtggaacccatttcc 49720082  T
Q  501 aaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgt 572  Q
    ||||||||||||||||| | |||||| | |||||| | || |||||| || |||  |||||||||| |||||    
T  49720081 aaagtgtgagacccaccttcatttaaactaataagcaagtgagtgtttgagagaacgttgaaaagaaagtgt 49720010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 441 - 546
Target Start/End: Complemental strand, 10817457 - 10817351
Alignment:
Q  441 tcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaaccta-tttacaaagtgtgagacccaccatgatttaagccaataagaatg 539  Q
    |||||||||||| |||| |||| ||| ||||||| |||||||||||||||||||| ||| |||||||| ||| ||||| |||||||||| |||||||| |    
T  10817457 tcattctcttatcagataaaattaatctatgacctatcactttaagtggaacctatttttcaaagtgtcagatccaccctgatttaagcgaataagaaag 10817358  T
Q  540 taagtgt 546  Q
    | |||||    
T  10817357 tgagtgt 10817351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 459 - 572
Target Start/End: Complemental strand, 34706703 - 34706590
Alignment:
Q  459 aaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgt 558  Q
    |||||||||| ||||||| ||||||||| |||||| |||| |||||||||||| |||||||||||||||| ||| |||| ||  ||||| || | | |||    
T  34706703 aaatcaatgtgtgacccaccactttaagcggaacccatttccaaagtgtgagatccaccatgatttaagcaaattagaaagtgggtgttggagatagtgt 34706604  T
Q  559 tgaaaagagagtgt 572  Q
    | ||||||||||||    
T  34706603 tcaaaagagagtgt 34706590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 438 - 579
Target Start/End: Complemental strand, 44225977 - 44225836
Alignment:
Q  438 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaa 537  Q
    |||||| ||||||||| |||||||  | |||||| ||||||||||||||||||||| |||| ||| |||||||||||| | | |||||| ||||||| ||    
T  44225977 cactcactctcttattggatgaaactagtgtatgtcccatcactttaagtggaacccattttcaatgtgtgagacccagctttatttaaaccaataataa 44225878  T
Q  538 tgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
     || | |||| | |||| ||||| ||||| | ||||||||||    
T  44225877 agtgaatgtttggaagagtgttggaaagatattgttgctagc 44225836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 463 - 568
Target Start/End: Complemental strand, 53655524 - 53655419
Alignment:
Q  463 caatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaa 562  Q
    |||||| ||||||| || ||||||||||||| |||| |||||||||||| | || ||||||||||||||| |||| || |||||| || ||| |||||||    
T  53655524 caatgtgtgacccaccattttaagtggaacccattttcaaagtgtgagatcaactatgatttaagccaattagaaagtgagtgttggagagagtgttgaa 53655425  T
Q  563 aagaga 568  Q
    ||||||    
T  53655424 aagaga 53655419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 411 - 579
Target Start/End: Original strand, 27243056 - 27243224
Alignment:
Q  411 acactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgag 510  Q
    ||||| |||||| |||||||||| |  |||||| ||| ||||| ||| ||||||||| ||| |||| ||||||| ||||   | |||| ||||||||  |    
T  27243056 acactctcttttgaacactctctctaacactcactcttttattggataaaatcaatgcatgtcccaccactttatgtgggttccatttccaaagtgtatg 27243155  T
Q  511 acccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    ||||||  |||||||| ||||| |||  || ||| ||||||||| |||| |||||||||||||||||||    
T  27243156 acccacattgatttaacccaatgagagagtgagtattagaaagagtgttcaaaagagagtgttgctagc 27243224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 425 - 532
Target Start/End: Complemental strand, 44911760 - 44911653
Alignment:
Q  425 acactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgattt 524  Q
    |||||||||||  |||| ||| | ||||| ||| |||||||| |||||| || || |||||||||||| |||||  ||||| ||||||||||||||||||    
T  44911760 acactctctttaacacttatttttttattggataaaatcaatatatgacacaccaatttaagtggaacatatttctaaagtatgagacccaccatgattt 44911661  T
Q  525 aagccaat 532  Q
    ||||||||    
T  44911660 aagccaat 44911653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 401 - 515
Target Start/End: Original strand, 214036 - 214149
Alignment:
Q  401 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 500  Q
    |||||||| |||||| ||||||||||||||||||   |||||||||||||||| ||| ||| |||| ||||||||| |||||||| ||||  |  ||| |    
T  214036 aatgctaaagacactctcttttcaacactctcttcaacactcattctcttattggat-aaaccaatatatgacccaccactttaaatggagtccctttcc 214134  T
Q  501 aaagtgtgagaccca 515  Q
    |||||||||||||||    
T  214135 aaagtgtgagaccca 214149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 417 - 547
Target Start/End: Complemental strand, 38169156 - 38169026
Alignment:
Q  417 tcttttcaacactctctttgtcactcattctcttattagatgaaatc-aatgtatgacccatcactttaagtggaacctatttacaaagtgtgagaccca 515  Q
    ||||||||||||| ||||   |||||||| | ||||| ||| ||||| ||||||||| || |||||||||||| || | ||||||||||| ||||| | |    
T  38169156 tcttttcaacactatcttcaacactcatttttttattggat-aaatctaatgtatgatccgtcactttaagtgaaaaccatttacaaagtttgagatcta 38169058  T
Q  516 ccatgatttaagccaataagaatgtaagtgtt 547  Q
    ||||||||||||||||||| || || ||||||    
T  38169057 ccatgatttaagccaataaaaaagtgagtgtt 38169026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 477 - 579
Target Start/End: Original strand, 43657830 - 43657930
Alignment:
Q  477 tcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgct 576  Q
    ||||||||||||||||| ||||  |||| ||||||| |||  |||||||||||||| |||| || |||||| |||| | |||| ||||||||||||||||    
T  43657830 tcactttaagtggaacccatttttaaagggtgagactcac--tgatttaagccaattagaaagtgagtgttggaaacagtgttaaaaagagagtgttgct 43657927  T
Q  577 agc 579  Q
    |||    
T  43657928 agc 43657930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 425 - 579
Target Start/End: Original strand, 20791321 - 20791474
Alignment:
Q  425 acactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgattt 524  Q
    |||||||||||  |||||| | | ||||| ||||||||||||||||| |||| ||||||| | |    |||||| |||||||| ||| || | |||||||    
T  20791321 acactctctttagcactcactattttattggatgaaatcaatgtatgtcccaccactttatgcgagttctatttccaaagtgt-agatccgcaatgattt 20791419  T
Q  525 aagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    || |||||||||| || ||| ||||| ||| |||| ||||||||||| |||||||    
T  20791420 aaaccaataagaaagtgagtattagagagagtgttcaaaagagagtggtgctagc 20791474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 513 - 579
Target Start/End: Complemental strand, 40631263 - 40631197
Alignment:
Q  513 ccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    |||||||||||||||||||||| ||||||||||||||| ||  |||||||||| |||||||| ||||    
T  40631263 ccaccatgatttaagccaataaaaatgtaagtgttagagagtgtgttgaaaagtgagtgttgttagc 40631197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 418 - 574
Target Start/End: Original strand, 28529271 - 28529424
Alignment:
Q  418 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccacc 517  Q
    |||||||||||||||| |  |||||| ||| ||||| ||||||||||||||||| |||| |||| |  ||||   | |||| |||||||| ||||||||     
T  28529271 cttttcaacactctctctagcactcactcttttattggatgaaatcaatgtatgtcccaccactgt--gtgggttcaattttcaaagtgt-agacccaca 28529367  T
Q  518 atgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttg 574  Q
    ||||||||| |||||||||  || ||| ||||| ||  |||| ||||||||||||||    
T  28529368 atgatttaaaccaataagagagtgagtattagagagggtgttcaaaagagagtgttg 28529424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 439 - 579
Target Start/End: Complemental strand, 41452036 - 41451897
Alignment:
Q  439 actcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaat 538  Q
    ||||| ||| ||||| ||||||||||| ||||| |||| ||||||  ||||   | |||| ||||| || |||||||| ||||||||| |||||||||      
T  41452036 actcactcttttattggatgaaatcaaagtatgtcccaccactttgtgtgggttcaattttcaaagagt-agacccacaatgatttaaaccaataagaga 41451938  T
Q  539 gtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    || ||| ||||| ||| |||| |||||||||||||||||||    
T  41451937 gtgagtattagagagagtgttcaaaagagagtgttgctagc 41451897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 495 - 579
Target Start/End: Complemental strand, 52124041 - 52123958
Alignment:
Q  495 atttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    |||| |||||||| |||||||| ||||||||| |||||||||| || ||| ||||| ||| |||| |||||||||||||||||||    
T  52124041 attttcaaagtgt-agacccacaatgatttaaaccaataagaaagtgagtattagagagagtgttcaaaagagagtgttgctagc 52123958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 449 - 526
Target Start/End: Original strand, 9774214 - 9774291
Alignment:
Q  449 ttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaa 526  Q
    ||||| |||||||| |||||| | |||| |||||||||||||||| |||| |||| ||||||||||||| | ||||||    
T  9774214 ttattggatgaaattaatgtacgtcccaccactttaagtggaaccaattttcaaaatgtgagacccaccttaatttaa 9774291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 532
Target Start/End: Complemental strand, 46205649 - 46205580
Alignment:
Q  463 caatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaat 532  Q
    |||||| ||| | |||||||||||||||||  |||| |||||||||||||| |||||||||| |||||||    
T  46205649 caatgtgtgatctatcactttaagtggaactcatttccaaagtgtgagacctaccatgatttcagccaat 46205580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 439 - 579
Target Start/End: Original strand, 24734744 - 24734883
Alignment:
Q  439 actcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaat 538  Q
    ||||| ||| ||||| ||||||||||| ||||| |||| ||||||  ||||   | |||| ||||| || || ||||| ||||||||| |||||||||      
T  24734744 actcactcttttattggatgaaatcaaagtatgtcccaccactttgtgtgggttcaattttcaaagagt-aggcccacaatgatttaaaccaataagaga 24734842  T
Q  539 gtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    || ||| ||||| ||| |||| |||||||||||||||||||    
T  24734843 gtgagtattagagagagtgttcaaaagagagtgttgctagc 24734883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 403 - 469
Target Start/End: Original strand, 42780673 - 42780739
Alignment:
Q  403 tgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgta 469  Q
    ||||| |||||||||||||  |||||||||| |  |||||||||||||||| ||||||||| |||||    
T  42780673 tgctatggacactatctttctaacactctctctaacactcattctcttattggatgaaatccatgta 42780739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 463 - 537
Target Start/End: Original strand, 52223463 - 52223537
Alignment:
Q  463 caatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaa 537  Q
    |||||| |||| || ||||||||||  |||| |||| ||||||||||||||||||| |||||||| |||| ||||    
T  52223463 caatgtgtgacacaccactttaagtataacccatttccaaagtgtgagacccaccacgatttaagtcaattagaa 52223537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 441 - 546
Target Start/End: Complemental strand, 17440296 - 17440191
Alignment:
Q  441 tcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgt 540  Q
    ||||||| ||||| | |||||  | |||||||||||||||||||  || |||  |||| |||||||| ||||||| ||||||| ||| ||||||||| ||    
T  17440296 tcattcttttattgggtgaaactattgtatgacccatcactttagatgaaactcattttcaaagtgtaagacccatcatgattaaagtcaataagaaagt 17440197  T
Q  541 aagtgt 546  Q
     |||||    
T  17440196 gagtgt 17440191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 445 - 517
Target Start/End: Original strand, 8475199 - 8475271
Alignment:
Q  445 tctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccacc 517  Q
    ||||||||| |||||||  |||||||| | || | |||||| ||||||| |||| ||||||||||||||||||    
T  8475199 tctcttattggatgaaactaatgtatgtctcaccgctttaaatggaacccatttccaaagtgtgagacccacc 8475271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 459 - 547
Target Start/End: Original strand, 21175550 - 21175638
Alignment:
Q  459 aaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgtt 547  Q
    |||||| ||||||||||| || ||| | || || | |||| |||||| ||||||||||||| |||||||||||||| || || ||||||    
T  21175550 aaatcattgtatgacccaccattttgaatgaaatccattttcaaagtatgagacccaccataatttaagccaataataaagtgagtgtt 21175638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 449 - 536
Target Start/End: Complemental strand, 18427281 - 18427195
Alignment:
Q  449 ttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataaga 536  Q
    ||||| ||||||||||||||||| |||| || |||  ||||   |||||| |||||||| |||||||| ||||||||| |||||||||    
T  18427281 ttattggatgaaatcaatgtatgtcccaccattttgtgtgggttctattttcaaagtgt-agacccacaatgatttaaaccaataaga 18427195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 579
Target Start/End: Complemental strand, 5452222 - 5452064
Alignment:
Q  418 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccacc 517  Q
    ||||||||||||||||||  || ||| ||| ||||| ||||||||||||||||  |||| ||||||  |||||  | |||| | |||||| |||||||      
T  5452222 cttttcaacactctctttaacattcactcttttattggatgaaatcaatgtatttcccaccactttgtgtggattcaattttctaagtgt-agaccca-- 5452126  T
Q  518 atgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    | |||||||  ||||||||  |  ||| || || ||| |||| |||||||||||||||||||    
T  5452125 aggatttaaatcaataagagagcgagtattggagagagtgttcaaaagagagtgttgctagc 5452064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 579
Target Start/End: Complemental strand, 37776845 - 37776705
Alignment:
Q  438 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaa 537  Q
    |||||| ||| ||||||||||||||||||||||| || | ||||||  ||||   | |||| |||||||| ||||| || ||||||||| ||| |||||     
T  37776845 cactcactcttttattagatgaaatcaatgtatgtcctaccactttgtgtgggttcaattttcaaagtgt-agacctacaatgatttaaaccactaagag 37776747  T
Q  538 tgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
     || ||| ||||| ||  |||| | || ||||||||||||||    
T  37776746 agtgagtattagagagggtgttcataaaagagtgttgctagc 37776705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 559
Target Start/End: Original strand, 37926569 - 37926690
Alignment:
Q  438 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaa 537  Q
    |||||| | ||||||||| ||||||||||||| | || |  |||||| |||| ||| |||| ||||||| | |||| ||  |||||||| |||| ||||     
T  37926569 cactcactttcttattaggtgaaatcaatgtaggtcctactactttatgtgggacccattttcaaagtgcgggacctacattgatttaacccaacaagag 37926668  T
Q  538 tgtaagtgttagaaagattgtt 559  Q
     |||||||||||| ||| ||||    
T  37926669 agtaagtgttagagagaatgtt 37926690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 409 - 528
Target Start/End: Original strand, 25326840 - 25326959
Alignment:
Q  409 ggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtg 508  Q
    ||||||| ||||||||||||||||||   |||||||| ||||||| ||| |||||||||||||||||| |||||||||||||||| |||| |||||||      
T  25326840 ggacactctcttttcaacactctcttcaacactcattttcttattggataaaatcaatgtatgacccaccactttaagtggaacccatttccaaagtgca 25326939  T
Q  509 agacccaccatgatttaagc 528  Q
    | ||||||||| ||||||||    
T  25326940 aaacccaccataatttaagc 25326959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 409 - 528
Target Start/End: Original strand, 26159375 - 26159494
Alignment:
Q  409 ggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtg 508  Q
    ||||||| ||||||||||||||||||   |||||||| ||||||| ||| |||||||||||||||||| |||||||||||||||| |||| |||||||      
T  26159375 ggacactctcttttcaacactctcttcaacactcattttcttattggataaaatcaatgtatgacccaccactttaagtggaacccatttccaaagtgca 26159474  T
Q  509 agacccaccatgatttaagc 528  Q
    | ||||||||| ||||||||    
T  26159475 aaacccaccataatttaagc 26159494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 438 - 527
Target Start/End: Complemental strand, 26171033 - 26170944
Alignment:
Q  438 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaag 527  Q
    |||||||| ||||||| ||| |||||||||||||||||| |||||||||||||||| |||| |||||||||| ||||||||| |||||||    
T  26171033 cactcattttcttattggataaaatcaatgtatgacccaccactttaagtggaacccatttccaaagtgtgaaacccaccataatttaag 26170944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 401 - 579
Target Start/End: Original strand, 12690253 - 12690431
Alignment:
Q  401 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 500  Q
    ||||||| ||||||| | |||| |||||||||| |  ||||   ||| ||||| |||||||| |||| ||| | || |||||||||||||| |||||| |    
T  12690253 aatgctagggacactctattttaaacactctctctaacacttgctcttttattggatgaaattaatgcatgtctcaccactttaagtggaatctatttcc 12690352  T
Q  501 aaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    ||||||||||||||||| |||||||| |||||||| | |  |||||| || ||  ||||||||||||||| ||| ||||    
T  12690353 aaagtgtgagacccaccttgatttaaaccaataaggaagagagtgtttgagaggatgttgaaaagagagtattgttagc 12690431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 406 - 572
Target Start/End: Complemental strand, 6163693 - 6163527
Alignment:
Q  406 taaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagt 505  Q
    |||||||||| ||||||||| ||| | ||   |||||||| | | ||| | | ||| |||||| ||||||| |||||||||| ||||  |||| ||||||    
T  6163693 taaggacactctcttttcaagacttttttctacactcattttttaattggcttaaaccaatgtttgacccaccactttaagtagaactcatttccaaagt 6163594  T
Q  506 gtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgt 572  Q
    ||||||| ||| ||||||||||||||| | || || ||||||||| ||| | |||||||||||||||    
T  6163593 gtgagacgcactatgatttaagccaattaaaaagtgagtgttagagagaatattgaaaagagagtgt 6163527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 419 - 579
Target Start/End: Original strand, 34905355 - 34905514
Alignment:
Q  419 ttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccacca 518  Q
    ||||||||||||||| |  |||||| ||| ||||| ||||||||||||||||| |||| ||||||   |||   | |||| |||||||| |||||||| |    
T  34905355 ttttcaacactctctctaacactcactcttttattggatgaaatcaatgtatgtcccaccactttgtttgggttcaattttcaaagtgt-agacccacaa 34905453  T
Q  519 tgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgctagc 579  Q
    |||||||| |||||||||  || ||| ||||| ||  |||| |||||||||||||||||||    
T  34905454 tgatttaaaccaataagagagtgagtattagagagggtgttcaaaagagagtgttgctagc 34905514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 401 - 572
Target Start/End: Complemental strand, 29610416 - 29610245
Alignment:
Q  401 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 500  Q
    |||||||| |||||| |||||||||||||||||    |||||| |  |||||||| | |||| |||||||| |||| |||||||||||||||| ||||      
T  29610416 aatgctaatgacactctcttttcaacactctctcaaacactcacttgcttattagtttaaatgaatgtatgtcccaccactttaagtggaaccaatttct 29610317  T
Q  501 aaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgt 572  Q
    || |||||||||||||  | |||||| |||| ||  | || |||||| || ||| |||||||||| ||||||    
T  29610316 aatgtgtgagacccacattcatttaaaccaacaatcaagtgagtgtttgagagagtgttgaaaagtgagtgt 29610245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 401 - 526
Target Start/End: Complemental strand, 31947386 - 31947261
Alignment:
Q  401 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 500  Q
    ||||||||||||||||||||||||||||| |||| | |  ||||||||||||| |||||||  ||||||| || || || ||||| ||| ||  |||| |    
T  31947386 aatgctaaggacactatcttttcaacactttcttcgacgttcattctcttattggatgaaacaaatgtataactcaccattttaaatggtactcattttc 31947287  T
Q  501 aaagtgtgagacccaccatgatttaa 526  Q
    ||||| |||| |||| ||||||||||    
T  31947286 aaagtatgaggcccatcatgatttaa 31947261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 8e-26; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 398 - 534
Target Start/End: Original strand, 10299883 - 10300019
Alignment:
Q  398 agaaatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatt 497  Q
    |||||||||| ||| ||| ||||||||||||||||||   |||||||||||||||| ||||||  ||||| |||||||| |||||| ||||| ||| |||    
T  10299883 agaaatgctagggatactctcttttcaacactctcttcaacactcattctcttattggatgaacccaatgcatgacccaccacttttagtgggacccatt 10299982  T
Q  498 tacaaagtgtgagacccaccatgatttaagccaataa 534  Q
    | |||||||| ||| |||||||| ||||| |||||||    
T  10299983 tccaaagtgtaagatccaccatgctttaaaccaataa 10300019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 481 - 573
Target Start/End: Complemental strand, 41034529 - 41034437
Alignment:
Q  481 tttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgtt 573  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||| || |||||| || ||| ||||||||||||||||||    
T  41034529 tttaagtggaacccatttccaaagtgtgagacccaccatgatttaagccaattagaaagtgagtgttggatagagtgttgaaaagagagtgtt 41034437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 410 - 575
Target Start/End: Original strand, 20526764 - 20526929
Alignment:
Q  410 gacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtga 509  Q
    |||||| ||||||||||||| |||||  |||| |||||||| || ||||||||||||  |||||||||||||||  ||| |||| |||| |||||| |||    
T  20526764 gacactctcttttcaacactttctttaacacttattctcttgtttgatgaaatcaatacatgacccatcacttttcgtgaaacccattttcaaagtttga 20526863  T
Q  510 gacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaaaagagagtgttgc 575  Q
     ||||| |||||||||||| |||||||| || | || | || |||  ||||||| |||||||||||    
T  20526864 aacccaacatgatttaagctaataagaaggtgaatggtggagagagggttgaaaggagagtgttgc 20526929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 463 - 572
Target Start/End: Complemental strand, 25002123 - 25002014
Alignment:
Q  463 caatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaa 562  Q
    |||||| ||||||| ||||||||||||| || |||| ||||||||||||||||| ||||||||| ||||| |||| || |||||| || ||| |||||||    
T  25002123 caatgtgtgacccaccactttaagtggagcccatttccaaagtgtgagacccactatgatttaaaccaattagaaagtgagtgttggagagagtgttgaa 25002024  T
Q  563 aagagagtgt 572  Q
    ||||||||||    
T  25002023 aagagagtgt 25002014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 463 - 567
Target Start/End: Original strand, 36325501 - 36325604
Alignment:
Q  463 caatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagattgttgaa 562  Q
    |||||| ||||||| |||||||||||||||| ||||  ||||||| |||||||||||||||||||||||| | || || |||||| || ||| |||||||    
T  36325501 caatgtgtgacccaccactttaagtggaacccatttt-aaagtgtaagacccaccatgatttaagccaattaaaaagtgagtgttggagagaatgttgaa 36325599  T
Q  563 aagag 567  Q
    |||||    
T  36325600 aagag 36325604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 441 - 525
Target Start/End: Complemental strand, 43461507 - 43461423
Alignment:
Q  441 tcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgattta 525  Q
    ||||||| | ||| ||||||  ||||||||||||||||||||| ||||||||| || | ||||||||||||||||||||||||||    
T  43461507 tcattctgtcattggatgaatgcaatgtatgacccatcacttttagtggaacccatattcaaagtgtgagacccaccatgattta 43461423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 438 - 568
Target Start/End: Original strand, 7585024 - 7585154
Alignment:
Q  438 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaa 537  Q
    |||||||||||||||| |||||||  | |||||| || ||||||||||||| |||| |||| ||| ||||||||| |||| | |||||| | ||||| ||    
T  7585024 cactcattctcttattggatgaaactagtgtatgtcctatcactttaagtgaaacccatttccaatgtgtgagactcaccttaatttaaacaaataataa 7585123  T
Q  538 tgtaagtgttagaaagattgttgaaaagaga 568  Q
     || |||||| | |||| |||||||||||||    
T  7585124 agtgagtgtttggaagagtgttgaaaagaga 7585154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 442 - 577
Target Start/End: Complemental strand, 6530012 - 6529877
Alignment:
Q  442 cattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgta 541  Q
    |||||||||||| |||||||  |||||||| |||| || ||| ||||||||| ||||  || ||||||||| |||| | ||||||||||| || || |      
T  6530012 cattctcttattggatgaaactaatgtatgtcccaccatttttagtggaacccatttctaatgtgtgagactcaccttaatttaagccaaaaataaagcg 6529913  T
Q  542 agtgttagaaagattgttgaaaagagagtgttgcta 577  Q
    |||||| || | | ||||||||||||||||||||||    
T  6529912 agtgtttgagaaagtgttgaaaagagagtgttgcta 6529877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 409 - 513
Target Start/End: Original strand, 1649559 - 1649662
Alignment:
Q  409 ggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtg 508  Q
    ||||||| ||||||||||||||||| |  |||||| | ||||||| |||||||| ||||||||  | | |||||||||||||||| ||||  ||||||||    
T  1649559 ggacactctcttttcaacactctctctaacactcactatcttattggatgaaattaatgtatgctctaccactttaagtggaacc-atttttaaagtgtg 1649657  T
Q  509 agacc 513  Q
    |||||    
T  1649658 agacc 1649662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 401 - 516
Target Start/End: Original strand, 32309481 - 32309596
Alignment:
Q  401 aatgctaaggacactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttac 500  Q
    |||||||  |||||| ||||||||||| ||||| |  |||||| ||||||||| ||| |||| |||||||| || | ||||| ||||| |||| |||| |    
T  32309481 aatgctagagacactctcttttcaacattctctctagcactcactctcttattggataaaattaatgtatgtccgaccacttcaagtgaaacccattttc 32309580  T
Q  501 aaagtgtgagacccac 516  Q
    ||||||||||| ||||    
T  32309581 aaagtgtgagatccac 32309596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 457 - 579
Target Start/End: Complemental strand, 2201712 - 2201590
Alignment:
Q  457 tgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgttagaaagatt 556  Q
    ||||||||||||  | |||| ||||||||||  |||| |||  ||||||||||| ||||| ||||||| | |||||||||  ||  ||| || | ||| |    
T  2201712 tgaaatcaatgtgggtcccaccactttaagtataacccattgccaaagtgtgagccccacaatgattttacccaataagagagtgggtgctaaagagagt 2201613  T
Q  557 gttgaaaagagagtgttgctagc 579  Q
    ||||||||||||||||| |||||    
T  2201612 gttgaaaagagagtgttcctagc 2201590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 459 - 547
Target Start/End: Original strand, 5630553 - 5630641
Alignment:
Q  459 aaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgtt 547  Q
    |||||| ||||||||||| || ||| | || || | |||| |||||| ||||||||||||| |||||||||||||| || || ||||||    
T  5630553 aaatcattgtatgacccaccattttgaatgaaatccattttcaaagtatgagacccaccataatttaagccaataataaagtgagtgtt 5630641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 463 - 547
Target Start/End: Complemental strand, 23260289 - 23260205
Alignment:
Q  463 caatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgtt 547  Q
    |||||| ||||||| || ||||||||||| | ||||  |||||||||||| ||| |||||||||| |||| | || |||||||||    
T  23260289 caatgtgtgacccaccattttaagtggaatccatttctaaagtgtgagacacactatgatttaagtcaattaaaaagtaagtgtt 23260205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 534
Target Start/End: Complemental strand, 5413878 - 5413784
Alignment:
Q  439 actcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataa 534  Q
    ||||| ||| ||||| ||||||||||||||||| |||| ||||||  ||||   | ||||||||||||| |||||||  ||||||||| |||||||    
T  5413878 actcactcttttattggatgaaatcaatgtatgtcccaccactttgtgtgggttcaatttacaaagtgt-agacccataatgatttaaaccaataa 5413784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 642 - 712
Target Start/End: Original strand, 316784 - 316854
Alignment:
Q  642 tagaaattagatatgttcttggagagtttgttgaatctaatttcttgcactctttgtatttctctttgtaa 712  Q
    |||||||||| | ||||||||||||| |||||||| ||||||||||| | || || | | |||||||||||    
T  316784 tagaaattaggtttgttcttggagagcttgttgaagctaatttcttgtaatccttttgtatctctttgtaa 316854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 476
Target Start/End: Complemental strand, 17537264 - 17537206
Alignment:
Q  418 cttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgaccca 476  Q
    |||||||||||||||| | ||||||| ||| ||||| ||| ||||||||||||| ||||    
T  17537264 cttttcaacactctctctatcactcactcttttatttgatcaaatcaatgtatgtccca 17537206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 411 - 489
Target Start/End: Complemental strand, 42224760 - 42224682
Alignment:
Q  411 acactatcttttcaacactctctttgtcactcattctcttattagatgaaatcaatgtatgacccatcactttaagtgg 489  Q
    ||||| |||||| | |||||||| |  |||||| ||| ||||||| ||||||||||||||| |||| ||||||| ||||    
T  42224760 acactctcttttgagcactctctctagcactcactcttttattaggtgaaatcaatgtatgtcccaccactttatgtgg 42224682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 449 - 579
Target Start/End: Original strand, 27861 - 27990
Alignment:
Q  449 ttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataagaatgtaagtgtta 548  Q
    ||||| |||| |||||||||||| |||| ||||||  ||||   |||||| |||||||| |||||||| ||||||||| |||||||||  || ||| |||    
T  27861 ttattggatggaatcaatgtatgtcccaccactttgtgtgggttctatttccaaagtgt-agacccacaatgatttaaaccaataagagagtgagtatta 27959  T
Q  549 gaaagattgttgaaaagagagtgttgctagc 579  Q
     | ||| |||| ||||||| |||||||||||    
T  27960 aagagagtgttcaaaagagggtgttgctagc 27990  T

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Target: scaffold0370 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0370
Description:

Target: scaffold0370; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 11249 - 11209
Alignment:
Q  89 aattttcagcttttggagtgtataaaaggccaacatttttt 129  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  11249 aattttcagcttttggagtgtataaaaggccaagatttttt 11209  T

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Target: scaffold0370; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 16539 - 16499
Alignment:
Q  89 aattttcagcttttggagtgtataaaaggccaacatttttt 129  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  16539 aattttcagcttttggagtgtataaaaggccaagatttttt 16499  T

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Target: scaffold0147 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 438 - 536
Target Start/End: Original strand, 28334 - 28432
Alignment:
Q  438 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaagccaataaga 536  Q
    |||||| | ||||||| ||||||||||||||  | ||||||| |||| |||| ||| |||| ||||||||| |||||||  |||||| | |||||||||    
T  28334 cactcactttcttattggatgaaatcaatgtgggtcccatcaatttatgtgggacccattttcaaagtgtgggacccacattgatttcacccaataaga 28432  T

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Target: scaffold0155 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 438 - 489
Target Start/End: Original strand, 35632 - 35683
Alignment:
Q  438 cactcattctcttattagatgaaatcaatgtatgacccatcactttaagtgg 489  Q
    |||||| ||||||||| ||||||||||||||||| ||||||| |||| ||||    
T  35632 cactcactctcttatttgatgaaatcaatgtatgtcccatcattttatgtgg 35683  T

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Target: scaffold0886 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 441 - 526
Target Start/End: Original strand, 3286 - 3371
Alignment:
Q  441 tcattctcttattagatgaaatcaatgtatgacccatcactttaagtggaacctatttacaaagtgtgagacccaccatgatttaa 526  Q
    ||||||| | ||| ||||||| ||||||||||| |  |||||||| ||| | | |||| |||||||| |||||||| |||||||||    
T  3286 tcattctttaattggatgaaaccaatgtatgactctccactttaaatggtatccattttcaaagtgtaagacccacaatgatttaa 3371  T

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