View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0295-INSERTION-9 (Length: 734)

Name: NF0295-INSERTION-9
Description: NF0295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0295-INSERTION-9
NF0295-INSERTION-9
[»] chr3 (33 HSPs)
chr3 (8-462)||(31252887-31253341)
chr3 (8-462)||(13002245-13002699)
chr3 (260-452)||(31093298-31093489)
chr3 (459-577)||(13002750-13002868)
chr3 (459-577)||(31252718-31252836)
chr3 (266-462)||(27206907-27207102)
chr3 (633-734)||(13002924-13003025)
chr3 (633-734)||(31252561-31252662)
chr3 (634-733)||(31093725-31093824)
chr3 (474-577)||(31093565-31093668)
chr3 (56-136)||(31249418-31249498)
chr3 (266-462)||(16163579-16163774)
chr3 (484-563)||(25658831-25658910)
chr3 (484-563)||(25665236-25665315)
chr3 (484-563)||(25671641-25671720)
chr3 (484-563)||(25678046-25678125)
chr3 (484-563)||(25684722-25684801)
chr3 (633-726)||(16163259-16163352)
chr3 (639-719)||(25658682-25658762)
chr3 (639-719)||(25665087-25665167)
chr3 (639-719)||(25671492-25671572)
chr3 (639-719)||(25677897-25677977)
chr3 (639-719)||(25684573-25684653)
chr3 (484-547)||(27206768-27206831)
chr3 (484-570)||(16163417-16163503)
chr3 (633-723)||(27206601-27206690)
chr3 (494-563)||(27229419-27229488)
chr3 (352-410)||(25659041-25659099)
chr3 (352-410)||(25665446-25665504)
chr3 (352-410)||(25671851-25671909)
chr3 (352-410)||(25678256-25678314)
chr3 (352-410)||(25684932-25684990)
chr3 (645-731)||(27229251-27229337)
[»] scaffold0029 (2 HSPs)
scaffold0029 (642-727)||(18364-18449)
scaffold0029 (642-727)||(43376-43461)
[»] chr2 (2 HSPs)
chr2 (642-727)||(33120609-33120694)
chr2 (642-727)||(33130352-33130437)


Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 8 - 462
Target Start/End: Complemental strand, 31253341 - 31252887
Alignment:
Q  8 cttgcaagtctaacattcgacactgctccatgacactatagtcaaagacacaaaacaaactatcactctaaatggaaaataactaacacactttagaaaa 107  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31253341 cttgcaagtctaacattagacactgctccatgacactatagtcaaagacacaaaacaaactatcactctaaatggaaaataactaacacactttagaaaa 31253242  T
Q  108 gaaaaatgggaagcaacatatttcacttgnnnnnnngacttggtgaaagtaaatacaacaacaaatttacgggagagatgattcatctacgaaaaggctt 207  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31253241 gaaaaatgggaagcaacatatttcacttgaaaaaaagacttggtgaaagtaaatacaacaacaaatttacgggagagatgattcatctacgaaaaggctt 31253142  T
Q  208 taaaagggaggacgggagacgaaaaatgagaggggatgtaagcaagcttataattgagtacatttaaacttctcatagcagagatataaagtgtaatcat 307  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31253141 taaaagggaggacgggagacgaaaaatgagaggggaagtaagcaagcttataattgagtacatttaaacttctcatagcagagatataaagtgtaatcat 31253042  T
Q  308 gattggaattcatcaaagaaagtctttcttaatatttacatcatcaattctaagctatcttgaaaggagcaggtttyagagaaggatatgcaaaagggcc 407  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31253041 gattggaattcatgaaagaaagtctttcttaatatttacatcatcaattctaagctatcttgaaaggagcaggttttagagaaggatatgcaaaagggcc 31252942  T
Q  408 ttcgattaatcctttagctatttgcttataagcggcttcggtaaaatggggtcca 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31252941 ttcgattaatcctttagctatttgcttataagcggcttcggtaaaatggggtcca 31252887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 8 - 462
Target Start/End: Original strand, 13002245 - 13002699
Alignment:
Q  8 cttgcaagtctaacattcgacactgctccatgacactatagtcaaagacacaaaacaaactatcactctaaatggaaaataactaacacactttagaaaa 107  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  13002245 cttgcaagtctaacattagacactgctccatgacactatagtcaaagacacaaaacaaactatcactttaaatggaaaataacttacacactttagaaaa 13002344  T
Q  108 gaaaaatgggaagcaacatatttcacttgnnnnnnngacttggtgaaagtaaatacaacaacaaatttacgggagagatgattcatctacgaaaaggctt 207  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13002345 gaaaaatgggaagcaacatatttcacttgaaaaaaagacttggtgaaagtaaatacaacaacaaatttacgggagagatgattcatctacgaaaaggctt 13002444  T
Q  208 taaaagggaggacgggagacgaaaaatgagaggggatgtaagcaagcttataattgagtacatttaaacttctcatagcagagatataaagtgtaatcat 307  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13002445 taaaagggaggacgggagacgaaaaatgagaggggaagtaagcaagcttataattgagtacatttaaacttctcatagcagagatataaagtgtaatcat 13002544  T
Q  308 gattggaattcatcaaagaaagtctttcttaatatttacatcatcaattctaagctatcttgaaaggagcaggtttyagagaaggatatgcaaaagggcc 407  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13002545 gattgtaattcattaaagaaagtctttcttaatatttacatcatcaattctaagctatcttgaaaggagcaggttttagagaaggatatgcaaaagggcc 13002644  T
Q  408 ttcgattaatcctttagctatttgcttataagcggcttcggtaaaatggggtcca 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13002645 ttcgattaatcctttagctatttgcttataagcggcttcggtaaaatggggtcca 13002699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 260 - 452
Target Start/End: Original strand, 31093298 - 31093489
Alignment:
Q  260 attgagtacatttaaacttctcatagcagagatataaagtgtaatcatgattggaattcatcaaagaaagtctttcttaatatttacatcatcaattcta 359  Q
    ||||| ||||||||||||| ||  | ||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| ||||||    
T  31093298 attgaatacatttaaactt-tcccatcagagatataaagtgtaatcatgcttggaattcatcaaagaaagtcgttcttaatgtttacatcatcgattcta 31093396  T
Q  360 agctatcttgaaaggagcaggtttyagagaaggatatgcaaaagggccttcgattaatcctttagctatttgcttataagcggcttcggtaaa 452  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||| | ||| | ||||||||| |||||||||||||||||||||||    
T  31093397 agctatcttgaaaggagcaggttttagagaaggatatgcaaaagagccttccactaaacatttagctatatgcttataagcggcttcggtaaa 31093489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 459 - 577
Target Start/End: Original strand, 13002750 - 13002868
Alignment:
Q  459 tccacaccaatactcatcatgatgatatggtccacttcctccacaacatgctttcaaaatctcaactttatcaaaaataaaacctgcatcattaatgtac 558  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||    
T  13002750 tccacaccaatactcatcatgatgatatggtccacttcctccacaacatgctttcaaaatctcgaccttatcagaaataaaacctgcatcattaatgtac 13002849  T
Q  559 ataaattagtgaatgggat 577  Q
    |||||||||||||||||||    
T  13002850 ataaattagtgaatgggat 13002868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 459 - 577
Target Start/End: Complemental strand, 31252836 - 31252718
Alignment:
Q  459 tccacaccaatactcatcatgatgatatggtccacttcctccacaacatgctttcaaaatctcaactttatcaaaaataaaacctgcatcattaatgtac 558  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||    
T  31252836 tccacaccaatactcatcatgatgatatggtccacttcctccacaacatgctttcaaaatctcgaccttatcagaaataaaacctgcatcattaatgtac 31252737  T
Q  559 ataaattagtgaatgggat 577  Q
    |||||||||||||||||||    
T  31252736 ataaattagtgaatgggat 31252718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 266 - 462
Target Start/End: Complemental strand, 27207102 - 27206907
Alignment:
Q  266 tacatttaaacttctcatagcagagatataaagtgtaatcatgattggaattcatcaaagaaagtctttcttaatatttacatcatcaattctaagctat 365  Q
    ||||||| |||||||| ||||| | ||||||||| |||||| | |||||| |||||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  27207102 tacatttgaacttctcctagcaaaaatataaagtctaatca-gtttggaaatcatcaaagaaagtctttcttaatgtttgcatcatcaattctaaactat 27207004  T
Q  366 cttgaaaggagcaggtttyagagaaggatatgcaaaagggccttcgattaatcctttagctatttgcttataagcggcttcggtaaaatggggtcca 462  Q
    |||||||||||| ||||| |||||||||| ||||||| ||||||||||||| ||||||| |||||| |||| ||| ||||| ||||| || ||||||    
T  27207003 cttgaaaggagcgggttttagagaaggatttgcaaaatggccttcgattaaacctttagttatttgtttatgagctgcttcagtaaagtgcggtcca 27206907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 633 - 734
Target Start/End: Original strand, 13002924 - 13003025
Alignment:
Q  633 tgctccacacaccatactgttgtggtgtttgatataaacgtttgacatcgttgtaataatcaaaatatactatcttagcttgagggtgtttctgttttat 732  Q
    |||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13002924 tgctccacacaccatattgttgtggtgtttgatataaacgcttggcatcgttgtaataatcaaaatatactatcttagcttgagggtgtttctgttttat 13003023  T
Q  733 tg 734  Q
    ||    
T  13003024 tg 13003025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 633 - 734
Target Start/End: Complemental strand, 31252662 - 31252561
Alignment:
Q  633 tgctccacacaccatactgttgtggtgtttgatataaacgtttgacatcgttgtaataatcaaaatatactatcttagcttgagggtgtttctgttttat 732  Q
    |||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31252662 tgctccacacaccatactgttgaggtgtttgatataaacgcttggcatcgttgtaataatcaaaatatactatcttagcttgagggtgtttctgttttat 31252563  T
Q  733 tg 734  Q
    ||    
T  31252562 tg 31252561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 634 - 733
Target Start/End: Original strand, 31093725 - 31093824
Alignment:
Q  634 gctccacacaccatactgttgtggtgtttgatataaacgtttgacatcgttgtaataatcaaaatatactatcttagcttgagggtgtttctgttttatt 733  Q
    ||||||| ||||||| |||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31093725 gctccacgcaccatattgttgtggtgcttgatataaacgtttggcatcgttgtaatagtcaaaatatactatcttagcttgagggtgtttctgttttatt 31093824  T

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Target: chr3; HSP #10
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 474 - 577
Target Start/End: Original strand, 31093565 - 31093668
Alignment:
Q  474 atcatgatgatatggtccacttcctccacaacatgctttcaaaatctcaactttatcaaaaataaaacctgcatcattaatgtacataaattagtgaatg 573  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| ||||||||||||||||||||||| ||| ||||||||| |||    
T  31093565 atcatgatgatatggtccacttcctccgcaacatgctttcaaaatttcgactttatcagaaataaaacctgcatcattaatgaacagaaattagtgcatg 31093664  T
Q  574 ggat 577  Q
    ||||    
T  31093665 ggat 31093668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 56 - 136
Target Start/End: Complemental strand, 31249498 - 31249418
Alignment:
Q  56 cacaaaacaaactatcactctaaatggaaaataactaacacactttagaaaagaaaaatgggaagcaacatatttcacttg 136  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31249498 cacaaaacaaactatcaatataaatggaaaataactaacacactttagaaaagaaaaatgggaagcaacacatttcacttg 31249418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 266 - 462
Target Start/End: Complemental strand, 16163774 - 16163579
Alignment:
Q  266 tacatttaaacttctcata-gcagagatataaagtgtaatcatgattggaattcatcaaagaaagtctttcttaatatttacatcatcaattctaagcta 364  Q
    |||||| ||||||||| || | |||||||||||||  ||||||| || ||||||||| || |||||||||||| || |   ||||||||||||||  |||    
T  16163774 tacattcaaacttctcctatgtagagatataaagtccaatcatgcttagaattcatcgaacaaagtctttcttgatgtg--catcatcaattctagacta 16163677  T
Q  365 tcttgaaaggagcaggtttyagagaaggatatgcaaaagggccttcgattaatcctttagctatttgcttataagcggcttcggtaaaatggggtcca 462  Q
    ||||||||| ||||||||| || || |||| ||||||||  ||||| ||||| ||||| |||||||||||||| || |||||||| || || ||||||    
T  16163676 tcttgaaagcagcaggttttagggatggatttgcaaaagaaccttcaattaaacctttggctatttgcttatatgctgcttcggttaagtgaggtcca 16163579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 484 - 563
Target Start/End: Complemental strand, 25658910 - 25658831
Alignment:
Q  484 tatggtccacttcctccacaacatgctttcaaaatctcaactttatcaaaaataaaacctgcatcattaatgtacataaa 563  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||| |||||||||||||||||||||| ||||||||    
T  25658910 tatggtccacttcctccacaacatgctttcaaaatctcttccttatcagaaataaaacctgcatcattaatttacataaa 25658831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 484 - 563
Target Start/End: Complemental strand, 25665315 - 25665236
Alignment:
Q  484 tatggtccacttcctccacaacatgctttcaaaatctcaactttatcaaaaataaaacctgcatcattaatgtacataaa 563  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||| |||||||||||||||||||||| ||||||||    
T  25665315 tatggtccacttcctccacaacatgctttcaaaatctcttccttatcagaaataaaacctgcatcattaatttacataaa 25665236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 484 - 563
Target Start/End: Complemental strand, 25671720 - 25671641
Alignment:
Q  484 tatggtccacttcctccacaacatgctttcaaaatctcaactttatcaaaaataaaacctgcatcattaatgtacataaa 563  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||| |||||||||||||||||||||| ||||||||    
T  25671720 tatggtccacttcctccacaacatgctttcaaaatctcttccttatcagaaataaaacctgcatcattaatttacataaa 25671641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 484 - 563
Target Start/End: Complemental strand, 25678125 - 25678046
Alignment:
Q  484 tatggtccacttcctccacaacatgctttcaaaatctcaactttatcaaaaataaaacctgcatcattaatgtacataaa 563  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||| |||||||||||||||||||||| ||||||||    
T  25678125 tatggtccacttcctccacaacatgctttcaaaatctcttccttatcagaaataaaacctgcatcattaatttacataaa 25678046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 484 - 563
Target Start/End: Complemental strand, 25684801 - 25684722
Alignment:
Q  484 tatggtccacttcctccacaacatgctttcaaaatctcaactttatcaaaaataaaacctgcatcattaatgtacataaa 563  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||| |||||||||||||||||||||| ||||||||    
T  25684801 tatggtccacttcctccacaacatgctttcaaaatctcttccttatcagaaataaaacctgcatcattaatttacataaa 25684722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 633 - 726
Target Start/End: Complemental strand, 16163352 - 16163259
Alignment:
Q  633 tgctccacacaccatactgttgtggtgtttgatataaacgtttgacatcgttgtaataatcaaaatatactatcttagcttgagggtgtttctg 726  Q
    ||||||||| |||||| |||||||||| || ||||||||||||| |||||||||| || |||||||||| ||||||||||||||| ||||||||    
T  16163352 tgctccacagaccatattgttgtggtgcttcatataaacgtttggcatcgttgtagtagtcaaaatatattatcttagcttgaggatgtttctg 16163259  T

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Target: chr3; HSP #19
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 639 - 719
Target Start/End: Complemental strand, 25658762 - 25658682
Alignment:
Q  639 acacaccatactgttgtggtgtttgatataaacgtttgacatcgttgtaataatcaaaatatactatcttagcttgagggt 719  Q
    |||||||||| || ||||||||||||||||||||||||| || |||||| || |||||||||| |||||||||||||||||    
T  25658762 acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggt 25658682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 639 - 719
Target Start/End: Complemental strand, 25665167 - 25665087
Alignment:
Q  639 acacaccatactgttgtggtgtttgatataaacgtttgacatcgttgtaataatcaaaatatactatcttagcttgagggt 719  Q
    |||||||||| || ||||||||||||||||||||||||| || |||||| || |||||||||| |||||||||||||||||    
T  25665167 acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggt 25665087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 639 - 719
Target Start/End: Complemental strand, 25671572 - 25671492
Alignment:
Q  639 acacaccatactgttgtggtgtttgatataaacgtttgacatcgttgtaataatcaaaatatactatcttagcttgagggt 719  Q
    |||||||||| || ||||||||||||||||||||||||| || |||||| || |||||||||| |||||||||||||||||    
T  25671572 acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggt 25671492  T

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Target: chr3; HSP #22
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 639 - 719
Target Start/End: Complemental strand, 25677977 - 25677897
Alignment:
Q  639 acacaccatactgttgtggtgtttgatataaacgtttgacatcgttgtaataatcaaaatatactatcttagcttgagggt 719  Q
    |||||||||| || ||||||||||||||||||||||||| || |||||| || |||||||||| |||||||||||||||||    
T  25677977 acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggt 25677897  T

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Target: chr3; HSP #23
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 639 - 719
Target Start/End: Complemental strand, 25684653 - 25684573
Alignment:
Q  639 acacaccatactgttgtggtgtttgatataaacgtttgacatcgttgtaataatcaaaatatactatcttagcttgagggt 719  Q
    |||||||||| || ||||||||||||||||||||||||| || |||||| || |||||||||| |||||||||||||||||    
T  25684653 acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggt 25684573  T

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Target: chr3; HSP #24
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 484 - 547
Target Start/End: Complemental strand, 27206831 - 27206768
Alignment:
Q  484 tatggtccacttcctccacaacatgctttcaaaatctcaactttatcaaaaataaaacctgcat 547  Q
    |||||||||||||||||||||||||||||||||||||| || ||||| ||| ||||||||||||    
T  27206831 tatggtccacttcctccacaacatgctttcaaaatctcgacgttatccaaagtaaaacctgcat 27206768  T

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Target: chr3; HSP #25
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 484 - 570
Target Start/End: Complemental strand, 16163503 - 16163417
Alignment:
Q  484 tatggtccacttcctccacaacatgctttcaaaatctcaactttatcaaaaataaaacctgcatcattaatgtacataaattagtga 570  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||| || |||| ||| ||||||||||| ||||||| ||||||    
T  16163503 tatggtccaattcctccacaacatgctttcaaaacctcgaccttatcagaagtaaagcctacatcattaatgcacataaactagtga 16163417  T

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Target: chr3; HSP #26
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 633 - 723
Target Start/End: Complemental strand, 27206690 - 27206601
Alignment:
Q  633 tgctccacacaccatactgttgtggtgtttgatataaacgtttgacatcgttgtaataatcaaaatatactatcttagcttgagggtgttt 723  Q
    |||||||||| ||||| |||| ||||| ||| ||||||||||||||||| ||||||   ||||| ||||||||||||||||||||||||||    
T  27206690 tgctccacac-ccatattgttctggtgcttggtataaacgtttgacatcattgtaaacgtcaaagtatactatcttagcttgagggtgttt 27206601  T

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Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 494 - 563
Target Start/End: Complemental strand, 27229488 - 27229419
Alignment:
Q  494 ttcctccacaacatgctttcaaaatctcaactttatcaaaaataaaacctgcatcattaatgtacataaa 563  Q
    |||||||||||||||||| || |||||  || |||||| || |||| ||||||| |||||||||||||||    
T  27229488 ttcctccacaacatgcttgcataatcttgaccttatcagaagtaaagcctgcatgattaatgtacataaa 27229419  T

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Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 352 - 410
Target Start/End: Complemental strand, 25659099 - 25659041
Alignment:
Q  352 caattctaagctatcttgaaaggagcaggtttyagagaaggatatgcaaaagggccttc 410  Q
    |||||||||||||| |||||| ||| || ||| || ||||||| |||||||||||||||    
T  25659099 caattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttc 25659041  T

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Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 352 - 410
Target Start/End: Complemental strand, 25665504 - 25665446
Alignment:
Q  352 caattctaagctatcttgaaaggagcaggtttyagagaaggatatgcaaaagggccttc 410  Q
    |||||||||||||| |||||| ||| || ||| || ||||||| |||||||||||||||    
T  25665504 caattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttc 25665446  T

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Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 352 - 410
Target Start/End: Complemental strand, 25671909 - 25671851
Alignment:
Q  352 caattctaagctatcttgaaaggagcaggtttyagagaaggatatgcaaaagggccttc 410  Q
    |||||||||||||| |||||| ||| || ||| || ||||||| |||||||||||||||    
T  25671909 caattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttc 25671851  T

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Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 352 - 410
Target Start/End: Complemental strand, 25678314 - 25678256
Alignment:
Q  352 caattctaagctatcttgaaaggagcaggtttyagagaaggatatgcaaaagggccttc 410  Q
    |||||||||||||| |||||| ||| || ||| || ||||||| |||||||||||||||    
T  25678314 caattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttc 25678256  T

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Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 352 - 410
Target Start/End: Complemental strand, 25684990 - 25684932
Alignment:
Q  352 caattctaagctatcttgaaaggagcaggtttyagagaaggatatgcaaaagggccttc 410  Q
    |||||||||||||| |||||| ||| || ||| || ||||||| |||||||||||||||    
T  25684990 caattctaagctatattgaaaagaggagttttaagggaaggatttgcaaaagggccttc 25684932  T

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Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 645 - 731
Target Start/End: Complemental strand, 27229337 - 27229251
Alignment:
Q  645 catactgttgtggtgtttgatataaacgtttgacatcgttgtaataatcaaaatatactatcttagcttgagggtgtttctgtttta 731  Q
    |||| |||||||||| |||||||||||||||||||   ||||| |  ||||| |||| |||| ||||||||  |||||| |||||||    
T  27229337 catattgttgtggtgattgatataaacgtttgacaatattgtagtggtcaaagtatattatcctagcttgatagtgtttttgtttta 27229251  T

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Target: scaffold0029 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 642 - 727
Target Start/End: Original strand, 18364 - 18449
Alignment:
Q  642 caccatactgttgtggtgtttgatataaacgtttgacatcgttgtaataatcaaaatatactatcttagcttgagggtgtttctgt 727  Q
    ||||||| ||||| ||||||||||||||||||||| |||| || || || ||||| |||| ||||||| ||| |||||| ||||||    
T  18364 caccatattgttgcggtgtttgatataaacgtttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgt 18449  T

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Target: scaffold0029; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 642 - 727
Target Start/End: Original strand, 43376 - 43461
Alignment:
Q  642 caccatactgttgtggtgtttgatataaacgtttgacatcgttgtaataatcaaaatatactatcttagcttgagggtgtttctgt 727  Q
    ||||||| ||||| |||||||||||||||| |||| |||| || || || ||||| |||| ||||||| ||| |||||| ||||||    
T  43376 caccatattgttgcggtgtttgatataaacatttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgt 43461  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 642 - 727
Target Start/End: Original strand, 33120609 - 33120694
Alignment:
Q  642 caccatactgttgtggtgtttgatataaacgtttgacatcgttgtaataatcaaaatatactatcttagcttgagggtgtttctgt 727  Q
    ||||||| ||||| ||||||||||||||||||||| |||| || || || ||||| |||| ||||||| ||| |||||| ||||||    
T  33120609 caccatattgttgcggtgtttgatataaacgtttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgt 33120694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 642 - 727
Target Start/End: Original strand, 33130352 - 33130437
Alignment:
Q  642 caccatactgttgtggtgtttgatataaacgtttgacatcgttgtaataatcaaaatatactatcttagcttgagggtgtttctgt 727  Q
    ||||||| ||||| ||||||||||||||||||||| |||| || || || ||||| |||| ||||||| ||| |||||| ||||||    
T  33130352 caccatattgttgcggtgtttgatataaacgtttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgt 33130437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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