View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0295_high_2 (Length: 454)
Name: NF0295_high_2
Description: NF0295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0295_high_2 |
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| [»] scaffold0929 (1 HSPs) |
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Alignment Details
Target: scaffold0929 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 1474 - 1050
Alignment:
| Q |
1 |
gcaaattatgatctgtaagcttcaacatgtgaggggtgcactgcgtctgtgtgcggggtgcatggatcagacgctttttccgctgtattcttatttcttc |
100 |
Q |
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|||||||||| |||||||||||||||||||| |||| |||||| ||||||||| ||||||||||||||||| ||||||||| ||| ||||| |||||| |
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| T |
1474 |
gcaaattatgctctgtaagcttcaacatgtgtggggcgcactgggtctgtgtgtggggtgcatggatcagaggctttttccattgttttcttcattcttc |
1375 |
T |
|
| Q |
101 |
ttgtttatttcctacttcatatgagcttgaggcttaggtcctaagttccccccagttctttggtcttcatatgtttcattgtattgatcttctggcttcc |
200 |
Q |
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||||||||||| | ||| ||||||||||| | |||||| | |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1374 |
ttgtttatttcatccttgatatgagcttgggacttagggacaaagttcccccaagttatttggtcttcatatgtttcattgtattgatcttctggcttcc |
1275 |
T |
|
| Q |
201 |
ataactttcaagagatatcttggtggacttactttcatgatttataccaaaaaagattcaaaacgcctataatttttggttagggaagaaagagaattac |
300 |
Q |
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| T |
1274 |
ataactttcaagagatatcttggttgacttactttcatgatttataccaaaaaagatttaaaacgcctataatttttggttagggaagaaagagaattac |
1175 |
T |
|
| Q |
301 |
aataactcaaaacaaaatattttttaaaccacgagtaattcactctaaaacatttaaaaagtcctcaaatgataagaaagagatgcgataacatactaaa |
400 |
Q |
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| T |
1174 |
aataactcaaaacaaaatattttttaaaccacgagtaattcactctaaaacatttaaaaagtcctcaaatgataagaaagagatgcgataacatactaaa |
1075 |
T |
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| Q |
401 |
aaacattacataatgaggattcatc |
425 |
Q |
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| T |
1074 |
aaacattacataatgaggattcatc |
1050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 5e-60; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 146 - 402
Target Start/End: Complemental strand, 6370367 - 6370108
Alignment:
| Q |
146 |
ttccccccagttctttggtcttcatatgtttcattgtattgatcttctggcttccataactttcaagagatatcttggtggacttactttcatgatttat |
245 |
Q |
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| T |
6370367 |
ttcccccaaattatttagtcttcatatgtttcattgtattgatcttctagctcccataactttcaagagatgtcttggttgacttactttcatgatttat |
6370268 |
T |
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| Q |
246 |
accaaaaaagattcaaaacgcctataatttttggttagggaagaaagagaattacaataactcaaaacaaaatattttttaaaccacgagtaat---tca |
342 |
Q |
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| T |
6370267 |
actaaaaaagactcaaaacatctatagagtagggttaggaaagaaagagaattacaacgattaaaaacaaatcatttcttaaaccacgagtaataactca |
6370168 |
T |
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| Q |
343 |
ctctaaaacatttaaaaagtcctcaaatgataagaaagagatgcgataacatactaaaaa |
402 |
Q |
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| T |
6370167 |
ctctaaaacatttagaaagtcctcaaatgacaagaaaaaggctcgataacatactgaaaa |
6370108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 146 - 402
Target Start/End: Complemental strand, 6378832 - 6378573
Alignment:
| Q |
146 |
ttccccccagttctttggtcttcatatgtttcattgtattgatcttctggcttccataactttcaagagatatcttggtggacttactttcatgatttat |
245 |
Q |
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||||||| | || ||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
6378832 |
ttcccccaaattatttagtcttcatatgtttcattgtattgatcttctagctcccataactttcaagagatgtcttggttgacttactttcatgatttat |
6378733 |
T |
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| Q |
246 |
accaaaaaagattcaaaacgcctataatttttggttagggaagaaagagaattacaataactcaaaacaaaatattttttaaaccacgagtaat---tca |
342 |
Q |
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| T |
6378732 |
actaaaaaagactcaaaacatctatagagtagggttaggaaagaaagagaattacaacgattaaaaacaaatcatttcttaaaccacgagtaataactca |
6378633 |
T |
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| Q |
343 |
ctctaaaacatttaaaaagtcctcaaatgataagaaagagatgcgataacatactaaaaa |
402 |
Q |
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| T |
6378632 |
ctctaaaacatttagaaagtcctcaaatgacaagaaaaaggctcgataacatactgaaaa |
6378573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 318
Target Start/End: Complemental strand, 6383946 - 6383907
Alignment:
| Q |
279 |
gttagggaagaaagagaattacaataactcaaaacaaaat |
318 |
Q |
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| T |
6383946 |
gttagggaagaatgagaattacaacaactcaaaacaaaat |
6383907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 264
Target Start/End: Original strand, 33863267 - 33863347
Alignment:
| Q |
184 |
ttgatcttctggcttccataactttcaagagatatcttggtggacttactttcatgatttataccaaaaaagattcaaaac |
264 |
Q |
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| T |
33863267 |
ttgatctccttgcttccattactttcacgagatgtctaggttggcttaacttcatgatctataccaaaaaagactcaaaac |
33863347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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