View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0295_high_2 (Length: 454)
Name: NF0295_high_2
Description: NF0295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0295_high_2
[» ] scaffold0929 (1 HSPs)
Alignment Details
Target: scaffold0929 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 1474 - 1050
Alignment:
Q
1
gcaaattatgatctgtaagcttcaacatgtgaggggtgcactgcgtctgtgtgcggggtgcatggatcagacgctttttccgctgtattcttatttcttc
100
Q
|||||||||| |||||||||||||||||||| |||| |||||| ||||||||| ||||||||||||||||| ||||||||| ||| ||||| ||||||
T
1474
gcaaattatgctctgtaagcttcaacatgtgtggggcgcactgggtctgtgtgtggggtgcatggatcagaggctttttccattgttttcttcattcttc
1375
T
Q
101
ttgtttatttcctacttcatatgagcttgaggcttaggtcctaagttccccccagttctttggtcttcatatgtttcattgtattgatcttctggcttcc
200
Q
||||||||||| | ||| ||||||||||| | |||||| | |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
T
1374
ttgtttatttcatccttgatatgagcttgggacttagggacaaagttcccccaagttatttggtcttcatatgtttcattgtattgatcttctggcttcc
1275
T
Q
201
ataactttcaagagatatcttggtggacttactttcatgatttataccaaaaaagattcaaaacgcctataatttttggttagggaagaaagagaattac
300
Q
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
T
1274
ataactttcaagagatatcttggttgacttactttcatgatttataccaaaaaagatttaaaacgcctataatttttggttagggaagaaagagaattac
1175
T
Q
301
aataactcaaaacaaaatattttttaaaccacgagtaattcactctaaaacatttaaaaagtcctcaaatgataagaaagagatgcgataacatactaaa
400
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
1174
aataactcaaaacaaaatattttttaaaccacgagtaattcactctaaaacatttaaaaagtcctcaaatgataagaaagagatgcgataacatactaaa
1075
T
Q
401
aaacattacataatgaggattcatc
425
Q
|||||||||||||||||||||||||
T
1074
aaacattacataatgaggattcatc
1050
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 5e-60; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 146 - 402
Target Start/End: Complemental strand, 6370367 - 6370108
Alignment:
Q
146
ttccccccagttctttggtcttcatatgtttcattgtattgatcttctggcttccataactttcaagagatatcttggtggacttactttcatgatttat
245
Q
||||||| | || ||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| ||||||||||||||||||||
T
6370367
ttcccccaaattatttagtcttcatatgtttcattgtattgatcttctagctcccataactttcaagagatgtcttggttgacttactttcatgatttat
6370268
T
Q
246
accaaaaaagattcaaaacgcctataatttttggttagggaagaaagagaattacaataactcaaaacaaaatattttttaaaccacgagtaat---tca
342
Q
|| |||||||| ||||||| ||||| | ||||||| ||||||||||||||||| | | |||||||| |||| |||||||||||||||| |||
T
6370267
actaaaaaagactcaaaacatctatagagtagggttaggaaagaaagagaattacaacgattaaaaacaaatcatttcttaaaccacgagtaataactca
6370168
T
Q
343
ctctaaaacatttaaaaagtcctcaaatgataagaaagagatgcgataacatactaaaaa
402
Q
|||||||||||||| ||||||||||||||| |||||| || |||||||||||| ||||
T
6370167
ctctaaaacatttagaaagtcctcaaatgacaagaaaaaggctcgataacatactgaaaa
6370108
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 146 - 402
Target Start/End: Complemental strand, 6378832 - 6378573
Alignment:
Q
146
ttccccccagttctttggtcttcatatgtttcattgtattgatcttctggcttccataactttcaagagatatcttggtggacttactttcatgatttat
245
Q
||||||| | || ||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| ||||||||||||||||||||
T
6378832
ttcccccaaattatttagtcttcatatgtttcattgtattgatcttctagctcccataactttcaagagatgtcttggttgacttactttcatgatttat
6378733
T
Q
246
accaaaaaagattcaaaacgcctataatttttggttagggaagaaagagaattacaataactcaaaacaaaatattttttaaaccacgagtaat---tca
342
Q
|| |||||||| ||||||| ||||| | ||||||| ||||||||||||||||| | | |||||||| |||| |||||||||||||||| |||
T
6378732
actaaaaaagactcaaaacatctatagagtagggttaggaaagaaagagaattacaacgattaaaaacaaatcatttcttaaaccacgagtaataactca
6378633
T
Q
343
ctctaaaacatttaaaaagtcctcaaatgataagaaagagatgcgataacatactaaaaa
402
Q
|||||||||||||| ||||||||||||||| |||||| || |||||||||||| ||||
T
6378632
ctctaaaacatttagaaagtcctcaaatgacaagaaaaaggctcgataacatactgaaaa
6378573
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 318
Target Start/End: Complemental strand, 6383946 - 6383907
Alignment:
Q
279
gttagggaagaaagagaattacaataactcaaaacaaaat
318
Q
|||||||||||| ||||||||||| |||||||||||||||
T
6383946
gttagggaagaatgagaattacaacaactcaaaacaaaat
6383907
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 264
Target Start/End: Original strand, 33863267 - 33863347
Alignment:
Q
184
ttgatcttctggcttccataactttcaagagatatcttggtggacttactttcatgatttataccaaaaaagattcaaaac
264
Q
||||||| || |||||||| ||||||| ||||| ||| ||| | |||| |||||||| |||||||||||||| |||||||
T
33863267
ttgatctccttgcttccattactttcacgagatgtctaggttggcttaacttcatgatctataccaaaaaagactcaaaac
33863347
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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