View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0295_high_5 (Length: 315)
Name: NF0295_high_5
Description: NF0295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0295_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 23 - 260
Target Start/End: Original strand, 41652381 - 41652618
Alignment:
| Q |
23 |
cacagattcagtagttaagcaggtagatatgacttgcctaagcaatcttattattgagaatgggagaaaagataaggaagttctttagtttttaatggcg |
122 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41652381 |
cacagattcattagttaagcaggtagatatgacttgcctaagcaatcttattattgagaatgggagaaaagataaggaagttctttagtttttaatggcg |
41652480 |
T |
|
| Q |
123 |
cttatgttataacatgtggaaagggttttcgctgcaagtcatccagattctgtggagcttgagaaagcaaagcagatgctgaaagtacagtcactaacca |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41652481 |
cttatgttataacatgtggaaagggttttcgctgcaagtcatccagattctgtggagcttgagaaagcaaagccgatgctgaaagtacagtcactaacca |
41652580 |
T |
|
| Q |
223 |
tcctgaatttacttattgtcaattttatcgttcatatt |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
41652581 |
tcctgaatttacttattgtcaattttatcgttcatatt |
41652618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 23 - 249
Target Start/End: Original strand, 22879548 - 22879774
Alignment:
| Q |
23 |
cacagattcagtagttaagcaggtagatatgacttgcctaagcaatcttattattgagaat-gggagaaaagataaggaagttctttagtttttaatggc |
121 |
Q |
| |
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|||||||||| |||||||| ||||||||||||||| |||||| || |||||| ||||| ||| |||||||||||||||||||||||||||||||| | |
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| T |
22879548 |
cacagattcattagttaaggaggtagatatgacttacctaagaaaccttatt---gagaaacgggtgaaaagataaggaagttctttagtttttaatgcc |
22879644 |
T |
|
| Q |
122 |
gcttatgttata--acatgtggaaagggttttcgctgcaagtcatccagattctgtggagcttgagaaagcaaagcagatgctgaaagtacagtcactaa |
219 |
Q |
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|||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
22879645 |
gcttatgttatataacaggtggaaagggtttttgctgcaagtcatccagattctgtggagcttgagaaagcaaagcaaatgctgaaagtacagtcgctaa |
22879744 |
T |
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| Q |
220 |
ccatcctgaatttacttattgtcaatttta |
249 |
Q |
| |
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||||| |||| |||||||||||||| |||| |
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| T |
22879745 |
ccatcatgaaattacttattgtcaacttta |
22879774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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