View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0295_high_6 (Length: 279)

Name: NF0295_high_6
Description: NF0295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0295_high_6
NF0295_high_6
[»] chr8 (1 HSPs)
chr8 (42-262)||(4940266-4940485)
[»] chr4 (6 HSPs)
chr4 (155-262)||(3243437-3243544)
chr4 (152-214)||(25582903-25582965)
chr4 (166-219)||(40575575-40575628)
chr4 (154-241)||(25376378-25376465)
chr4 (166-241)||(40575471-40575546)
chr4 (152-216)||(32295869-32295933)
[»] chr7 (1 HSPs)
chr7 (152-262)||(490787-490897)
[»] chr6 (1 HSPs)
chr6 (152-213)||(5646166-5646227)
[»] chr5 (1 HSPs)
chr5 (152-241)||(35875257-35875346)
[»] chr3 (1 HSPs)
chr3 (152-239)||(39914912-39914999)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 42 - 262
Target Start/End: Original strand, 4940266 - 4940485
Alignment:
Q  42 gttcaatgtgattctagcatcgtgcatgtattgggtttagaaaatggggttgggttcaatttaattgtgacgtcgtgtaaaatgtttagttagtattttt 141  Q
    |||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||| || | ||||||||||||||||||||| ||||||||||||||      
T  4940266 gttcaatgtgattctaacatcgcgcatgtattgggtttagaagatggggttgggttaaactcaattgtgacgtcgtgtaaaatatttagttagtatttca 4940365  T
Q  142 aacatgtgacggaaattgttttagtagttatgcttgtaagataggctcatgtgacacgctacatgcagagatgtgaggtaaatatatcgatatggatatg 241  Q
    || |||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4940366 aa-atgtgacgaaaattgttttagtagttattctcgtaagataggctcatgtgacacgctacatgcagagatgtgaggcaaatatatcgatatggatatg 4940464  T
Q  242 cttcagagagaggggttcaca 262  Q
    |||||||||||||||||||||    
T  4940465 cttcagagagaggggttcaca 4940485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 262
Target Start/End: Original strand, 3243437 - 3243544
Alignment:
Q  155 aattgttttagtagttatgcttgtaagataggctcatgtgacacgctacatgcagagatgtgaggtaaatatatcgatatggatatgcttcagagagagg 254  Q
    |||||||| | ||| |||||| |||||||||| ||||| ||||||||||||||||||||||| || |  ||||| | ||||||||||  ||| ||| |||    
T  3243437 aattgtttgaatagctatgctcgtaagataggttcatgcgacacgctacatgcagagatgtggggcatgtatattggtatggatatggctcaaagacagg 3243536  T
Q  255 ggttcaca 262  Q
    || |||||    
T  3243537 ggatcaca 3243544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 25582965 - 25582903
Alignment:
Q  152 ggaaattgttttagtagttatgcttgtaagataggctcatgtgacacgctacatgcagagatg 214  Q
    ||||||||||| | ||| |||||| |||||||||| ||||||||| || ||||||||||||||    
T  25582965 ggaaattgtttgaatagctatgctcgtaagataggttcatgtgacgcgttacatgcagagatg 25582903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 40575628 - 40575575
Alignment:
Q  166 tagttatgcttgtaagataggctcatgtgacacgctacatgcagagatgtgagg 219  Q
    |||||||||||||||||| || |||||||||||| |||||||| |||| |||||    
T  40575628 tagttatgcttgtaagatcggttcatgtgacacgttacatgcaaagatatgagg 40575575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 241
Target Start/End: Complemental strand, 25376465 - 25376378
Alignment:
Q  154 aaattgttttagtagttatgcttgtaagataggctcatgtgacacgctacatgcagagatgtgaggtaaatatatcgatatggatatg 241  Q
    ||||||||| | ||| |||||| |||||||| | ||||||||| || |||||||||||||||| || |  ||||| | ||||||||||    
T  25376465 aaattgtttgaatagctatgctcgtaagataagttcatgtgacgcgttacatgcagagatgtggggcatgtatattggtatggatatg 25376378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 40575546 - 40575471
Alignment:
Q  166 tagttatgcttgtaagataggctcatgtgacacgctacatgcagagatgtgaggtaaatatatcgatatggatatg 241  Q
    |||||||||||||||||| |  | |||||||||| |||||||| |||||||||| |  ||||| |||||| |||||    
T  40575546 tagttatgcttgtaagatcgatttatgtgacacgttacatgcaaagatgtgaggcatgtatattgatatgtatatg 40575471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 32295933 - 32295869
Alignment:
Q  152 ggaaattgttttagtagttatgcttgtaagataggctcatgtgacacgctacatgcagagatgtg 216  Q
    ||||||||||| | |||||||||| |||||||||| |||||  || || |||||| |||||||||    
T  32295933 ggaaattgtttgaatagttatgctcgtaagataggttcatgcaacgcgttacatgtagagatgtg 32295869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 262
Target Start/End: Original strand, 490787 - 490897
Alignment:
Q  152 ggaaattgttttagtagttatgcttgtaagataggctcatgtgacacgctacatgcagagatgtgaggtaaatatatcgatatggatatgcttcagagag 251  Q
    ||||||||||| | |||||||||| |||||||||| ||||| ||| || |||||||||||||||| || |  ||||| | ||||||||||  || ||||     
T  490787 ggaaattgtttgaatagttatgctcgtaagataggttcatgcgacgcgttacatgcagagatgtggggcatgtatattggtatggatatggctcggagac 490886  T
Q  252 aggggttcaca 262  Q
    ||||| |||||    
T  490887 aggggatcaca 490897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 5646166 - 5646227
Alignment:
Q  152 ggaaattgttttagtagttatgcttgtaagataggctcatgtgacacgctacatgcagagat 213  Q
    ||||||||||| | ||||||||| ||| |||||| |||||| ||||||||||||||||||||    
T  5646166 ggaaattgtttgaatagttatgcctgtgagatagactcatgcgacacgctacatgcagagat 5646227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 241
Target Start/End: Original strand, 35875257 - 35875346
Alignment:
Q  152 ggaaattgttttagtagttatgcttgtaagataggctcatgtgacacgctacatgcagagatgtgaggtaaatatatcgatatggatatg 241  Q
    ||||||||||| | |||||||||| |||||||||| | ||| ||| ||||||||||||||||||| || |  ||||| | ||||||||||    
T  35875257 ggaaattgtttgaatagttatgctcgtaagataggataatgcgacgcgctacatgcagagatgtggggcatgtatattggtatggatatg 35875346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 39914912 - 39914999
Alignment:
Q  152 ggaaattgttttagtagttatgcttgtaagataggctcatgtgacacgctacatgcagagatgtgaggtaaatatatcgatatggata 239  Q
    ||||||||||| | |||||| ||| |||||||| | ||||| |||| | |||||||||||||||| || | |||||| | ||||||||    
T  39914912 ggaaattgtttgaatagttaagctcgtaagataagatcatgagacatgttacatgcagagatgtggggcatatatattggtatggata 39914999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1084 times since January 2019
Visitors: 2571