View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0295_low_1 (Length: 478)
Name: NF0295_low_1
Description: NF0295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0295_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 30 - 342
Target Start/End: Complemental strand, 43538356 - 43538044
Alignment:
| Q |
30 |
aaaactccaaccatttgacagacaacatacaaatatgggaccgagattccctaccgttaaagaatcttgtagattgcggtctttgccgtcaatgcaacga |
129 |
Q |
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| T |
43538356 |
aaaactccaaccatttgacagacaacatacaaatatgggaccgagattccctaccgttaaagaatcttgtagattgcggtctttgccgtcaatgcaacga |
43538257 |
T |
|
| Q |
130 |
aggccattcgattgaaatcaaatggtccaaatttacaattgattaaacgagtcaaagacatttttattagaacaacaactagcaacataagaataataaa |
229 |
Q |
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| T |
43538256 |
aggccattcgattgaaatcaaatggtccaaattttcaattgattaaacgagtcaaagacatttttattagaacaacaactagcaacataagaataataaa |
43538157 |
T |
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| Q |
230 |
aaagataaatcacaagacaatgaacacaatcgtttacgattgatttggaaacaattatagttctatattattgcttgagtgattagtttaaagtgttaca |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||| |
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| T |
43538156 |
aaagataaatcacaagacaatgaacacaatcgtttacgattgatttggaaacaattatagttctatattattacttgagtgattaatttacagtgttaca |
43538057 |
T |
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| Q |
330 |
aatcatatatata |
342 |
Q |
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| T |
43538056 |
agtcatatatata |
43538044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 397 - 469
Target Start/End: Complemental strand, 43538036 - 43537964
Alignment:
| Q |
397 |
atgaaagaaaaggagcaaatgtcacgacgctcgctcaactctctcgctccttaccgatcttttgtgcctatga |
469 |
Q |
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||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43538036 |
atgaaagaataggagcaaatgtcacgacggtcgctcaactctctcgccccttaccgatcttttgtgcctatga |
43537964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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