View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0295_low_10 (Length: 261)
Name: NF0295_low_10
Description: NF0295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0295_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 51905456 - 51905599
Alignment:
| Q |
1 |
acaagttcttaagtagaacctaacaaa-taaaccaaccaaaatacttaatattttcaagaatatcaagcttccaagccaactccaagagttggtagtggt |
99 |
Q |
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| T |
51905456 |
acaagttcttaagtagaacctaacaaaataaaccaaccaaaatacttaatattttcaagaatatcaagcttccaagccaactccaagagttggtagtggt |
51905555 |
T |
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| Q |
100 |
aacatttgaatgagaccgatttggatcggtgaggctcggatggg |
143 |
Q |
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| T |
51905556 |
aacatttgaatgagaccgatttggatcggtgaggctcggatggg |
51905599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 51905636 - 51905711
Alignment:
| Q |
177 |
ttaacagggagtttactaaaatattcttaatttttaaatagaattactttttgtctcaccctattcttcttcatct |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51905636 |
ttaacagggagtttactaaaatattcttaatttttaaatagaattactttttgtctcaccctattcttcttcatct |
51905711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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