View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0295_low_4 (Length: 414)
Name: NF0295_low_4
Description: NF0295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0295_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 178; Significance: 7e-96; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 205 - 402
Target Start/End: Original strand, 42815512 - 42815708
Alignment:
| Q |
205 |
tctttctttctaattttttgtttctatctaggttacgctcgaataaatcgaaccaccggaacgatgaaaataaatctaaaattcttcaagaacgataaga |
304 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42815512 |
tctttctttctaatttttt-tttctatctaggttacgatcgaataaatcgaaccaccagaacgattaaaataaatctaaaattcttcaagaacgataaga |
42815610 |
T |
|
| Q |
305 |
aacggagtcttgaatgatcttgagagcatcaacaacaatggaatccaaatccagcgaagcgaaaccctaccgaatcagaaaccgcgagaagcaacagc |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42815611 |
aacggagtcttgaatgatcttgagagcatcaacaacaatggaatccaaatccagcgaagcgaaaccctaccgaatcagaaaccgcgagaagcaacagc |
42815708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 205 - 401
Target Start/End: Original strand, 35064481 - 35064677
Alignment:
| Q |
205 |
tctttctttctaattttttgtttctatctaggttacgctcgaataaatcgaaccaccggaacgatgaaaataaatctaaaattcttcaagaacgataaga |
304 |
Q |
| |
|
||||||| |||| |||||| || |||||||||| ||| ||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35064481 |
tctttctctctactttttttttcctatctaggtcacgatcgaataaatcgaaccaccataacaatgaaaataaatctaaatttcttcaagaacgataaga |
35064580 |
T |
|
| Q |
305 |
aacggagtcttgaatgatcttgagagcatcaacaacaatggaatccaaatccagcgaagcgaaaccctaccgaatcagaaaccgcgagaagcaacag |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
35064581 |
aacggagtcttgaatgatcttgagagcatcaacaaaaatggaatccaaatccagcgaagcgaaaccctaccgaattagaaaccacgagaagcaacag |
35064677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 268 - 402
Target Start/End: Original strand, 43025729 - 43025867
Alignment:
| Q |
268 |
atgaaaataaatctaaaattcttcaagaacgataag----aaacggagtcttgaatgatcttgagagcatcaacaacaatggaatccaaatccagcgaag |
363 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43025729 |
atgaaaataaatctaaaactcttcaagaacgataagtaagaaacggagtcttgaatgatcttgagagcatcaacaacaatggaatccaaatccagcgaag |
43025828 |
T |
|
| Q |
364 |
cgaaaccctaccgaatcagaaaccgcgagaagcaacagc |
402 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
43025829 |
cgaaaccctaccgaacaagaaaccgcgtaaagcaacagc |
43025867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 42815319 - 42815403
Alignment:
| Q |
12 |
atgaaaggaccatccattggaattgaattataatcttttgcactcttaaatttataatacaccgccattgtagaatactctattg |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42815319 |
atgaaaggaccatccattggaattgaattataatcttttgcactcttaaatttataatacaccgccattgtagaatactctattg |
42815403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 35064278 - 35064362
Alignment:
| Q |
12 |
atgaaaggaccatccattggaattgaattataatcttttgcactcttaaatttataatacaccgccattgtagaatactctattg |
96 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||| | |||||||||| |
|
|
| T |
35064278 |
atgaaaggaccatccataggaattgaataataatcttttgcactcttaaatttataatacaccgccatggtaaattactctattg |
35064362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 43025537 - 43025617
Alignment:
| Q |
15 |
aaaggaccatccattggaattgaattataatcttttgcactcttaaatttataatacaccgccattgtagaatactctatt |
95 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
43025537 |
aaaggaccatccattggaattgaatggtaatcttttgcactcttaaatttataatacaccgccattgtaaattactctatt |
43025617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 41562543 - 41562476
Alignment:
| Q |
12 |
atgaaaggaccatccattggaattgaattataatcttttgcactcttaaatttataatacaccgccat |
79 |
Q |
| |
|
||||||||||||||||| | |||||||| ||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
41562543 |
atgaaaggaccatccatggaaattgaatcataatctcttgcacttttaaatttataatacaccgccat |
41562476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 501 times since January 2019
Visitors: 2566