View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0297_high_3 (Length: 390)
Name: NF0297_high_3
Description: NF0297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0297_high_3 |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 10 - 358
Target Start/End: Original strand, 21628 - 21976
Alignment:
| Q |
10 |
aagaaaatagtacatagaagacggttgtgatggtctctattttttggactcatgctcattacaatcaccatcgataaaccacatttaatagctttatttg |
109 |
Q |
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| T |
21628 |
aagaaaaaagtacatagaagacggttgtgatggtctctattttttggactcatgctcattacaatcaccatcgataaaccacatttaatagctttatttc |
21727 |
T |
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| Q |
110 |
agaaaatagtaattggaaacttaggtcttggaacaatcagttggagaaaaggaaactgtttttcctttgagatcgtacccaactaaaaaattaaattgtg |
209 |
Q |
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| T |
21728 |
aaaaaatagtaattggaaacttaggtcttggaacaatcagttggagaaaaggaaactgtttttcctttgagatcgtacccaactaaaaaattaaattgtg |
21827 |
T |
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| Q |
210 |
ctctatttccaaagatggaaatacctttatttggtacaacaaacaagcaatacgagttgttgccaaccttaacaactaagttctgaggtttaagggtaac |
309 |
Q |
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| T |
21828 |
ctctatttccaaagatggaaatacctttatttggtacgacaaacaagcaatacgagtggttgccaagctcaacaactaagttctgaggtttaagggtaac |
21927 |
T |
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| Q |
310 |
atcagctctcgtaaaatgaaacacaaaattagggaattttgttatatct |
358 |
Q |
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| T |
21928 |
atcagctctcgtaaaatgaaacacaaaattagggaactttgttatatct |
21976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 135 - 350
Target Start/End: Original strand, 13715 - 13930
Alignment:
| Q |
135 |
tcttggaacaatcagttggagaaaaggaaactgtttttcctttgagatcgtacccaactaaaaaattaaattgtgctctatttccaaagatggaaatacc |
234 |
Q |
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| T |
13715 |
tcttggaacaatcacttggagcaaaggaaacttttttcccttcgagatcatattctactagaaaatcaacgtgtgctatatttccaaagatggaaagatc |
13814 |
T |
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| Q |
235 |
tttatttggtacaacaaacaagcaatacgagttgttgccaaccttaacaactaagttctgaggtttaagggtaacatcagctctcgtaaaatgaaacaca |
334 |
Q |
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| T |
13815 |
attggatggtatggccaacaagcaatacgagttgttgccaagaacaccaagtaatttctgaggtttaagggtaacatcggctcccgtgaaatgaaacacg |
13914 |
T |
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| Q |
335 |
aaattagggaattttg |
350 |
Q |
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| T |
13915 |
aaattagggaactttg |
13930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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