View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0298-INSERTION-3 (Length: 540)
Name: NF0298-INSERTION-3
Description: NF0298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0298-INSERTION-3 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 9 - 523
Target Start/End: Original strand, 14398180 - 14398686
Alignment:
| Q |
9 |
cctcttactaccacaatctagattaaattaaaatgcaactaaaacaagtttttgaccctgtttgttcaatagaatgtggatttttattgaacaataagcc |
108 |
Q |
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| T |
14398180 |
cctcttactaccaca-tctagattaaattaaaatgcaactaaaaaaagtttttgaccctgtttgttcaatagaatgtggatttttattgaacaataagcc |
14398278 |
T |
|
| Q |
109 |
taattaatgattattgttttgttgtccctttcaggagtaatttttaagttccattggccgagggaccggatccggatgcattgcaaacgacattgtaatc |
208 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14398279 |
taattaatgattattgttttgttgtccctttcaggagtattttttaagttccattggccgagggaccgg------atgcattgcaaacgacattgtaatc |
14398372 |
T |
|
| Q |
209 |
taataaagtttacggaaggggaagcatggtgttgcgagtagaaagagattatagtatactgtaaattgatggctgatgatgattcacaataatgtgaatg |
308 |
Q |
| |
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|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14398373 |
taataaagttcacggaaggggaagcatggtgctgcgagtagaaagagattatagtatactgtaaattgatggctgatgatgattcacaataatgtgaatg |
14398472 |
T |
|
| Q |
309 |
taaatagggttaatttcttatttaactagaagacattttattccattcatccataattttattatctagtttattactttacatccacattcagcttcca |
408 |
Q |
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| T |
14398473 |
taaatagggttaatttcttatttaactagaagacattttattccattcatccataattttattatctagtttattactttacatccacattaggcttcca |
14398572 |
T |
|
| Q |
409 |
tgatattgagcctannnnnnnnagaacatatggtggctgcacttgacttgctatttcaaataccaagtgcataatgtgaatcctgcaatccgcaaagtga |
508 |
Q |
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| T |
14398573 |
tgatattgagccta-tttttttagaacatatggtgactgcacttgacctgctatttcaaataccaagtgcataatgtgaatcctgcaatccgcaaagtga |
14398671 |
T |
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| Q |
509 |
gcattaaaagcaaca |
523 |
Q |
| |
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||||||||||||||| |
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| T |
14398672 |
gcattaaaagcaaca |
14398686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 318 - 418
Target Start/End: Original strand, 14392305 - 14392405
Alignment:
| Q |
318 |
ttaatttcttatttaactagaagacattttattccattcatccataattttattatctagtttattactttacatccacattcagcttccatgatattga |
417 |
Q |
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| T |
14392305 |
ttaatttcttatttaactagaggacattttattccattcatccataattttattttctagtttattactttacatccacatttagcttagatgatattga |
14392404 |
T |
|
| Q |
418 |
g |
418 |
Q |
| |
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| |
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|
| T |
14392405 |
g |
14392405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 190 - 321
Target Start/End: Original strand, 14392147 - 14392278
Alignment:
| Q |
190 |
tgcaaacgacattgtaatctaataaagtttacggaaggggaagcatggtgttgcgagtagaaagagattatagtatactgtaaattgatggctgatgatg |
289 |
Q |
| |
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||||||||||||||||| |||||||| ||| | ||| |||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||| || |
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| T |
14392147 |
tgcaaacgacattgtaaactaataaatgttataggcgggcaagcatggtgctgcgagtagaaagaaattatagtatactgtaatttgatggctgatggtg |
14392246 |
T |
|
| Q |
290 |
attcacaataatgtgaatgtaaatagggttaa |
321 |
Q |
| |
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||||| ||||||||||||||||||||| |||| |
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| T |
14392247 |
attcagaataatgtgaatgtaaataggtttaa |
14392278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 252 - 392
Target Start/End: Complemental strand, 16021305 - 16021164
Alignment:
| Q |
252 |
agagattatagtatactgtaaattgatggctgatgatgattcacaataatgtgaatgtaaatagggttaatttcttattt-aactagaagacattttatt |
350 |
Q |
| |
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|||||||| ||||||| |||| ||||||| |||| |||| ||||||||||||||||||||||||| |||||| | |||| ||||||| || ||||||| |
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| T |
16021305 |
agagattacagtataccgtaatttgatggttgattatgactcacaataatgtgaatgtaaataggtgtaatttgtcatttaaactagagaactttttatt |
16021206 |
T |
|
| Q |
351 |
ccattcatccataattttattatctagtttattactttacat |
392 |
Q |
| |
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|||||| |||||| |||| ||||| | ||||||| ||||||| |
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| T |
16021205 |
ccattcctccatagttttgttatcaactttattattttacat |
16021164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 300 - 376
Target Start/End: Complemental strand, 13883123 - 13883047
Alignment:
| Q |
300 |
atgtgaatgtaaatagggttaatttcttatttaactagaagacattttattccattcatccataattttattatcta |
376 |
Q |
| |
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||||||||| ||||||| ||||||| |||| |||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
13883123 |
atgtgaatgcaaataggtttaatttgttatgtaactagaggacattttattccattcatccataattttgttatcta |
13883047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 16021530 - 16021450
Alignment:
| Q |
68 |
gtttgttcaatagaatgtggattttt-attgaacaataagcctaattaatgattattgttttgttgtccctttcaggagta |
147 |
Q |
| |
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| T |
16021530 |
gtttgttccatggaatgtgaattttttaatgaacaattagcttaatcaatgattattgtttggatgtccctttcaggagta |
16021450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 68 - 157
Target Start/End: Complemental strand, 13852884 - 13852793
Alignment:
| Q |
68 |
gtttgttcaatagaatgtggattttt-attgaacaataagcctaattaatgattattgtttt-gttgtccctttcaggagtaatttttaagt |
157 |
Q |
| |
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||||||| ||| ||||||| |||||| | |||||||| |||||||| ||||||||||||||| | ||||||||| ||||||| |||| |||| |
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| T |
13852884 |
gtttgtttaattgaatgtgaattttttaatgaacaattagcctaatcaatgattattgttttggctgtccctttgaggagtatttttcaagt |
13852793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 13883327 - 13883228
Alignment:
| Q |
68 |
gtttgttcaatagaatgtggattttt-attgaacaataagcctaattaatgattattgttttgttgtccctttcaggagtaatttttaagttccattggc |
166 |
Q |
| |
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||||||||||| ||||||| |||||| | |||||||| |||||||| ||| |||||||||| ||||||||||| ||||| || | ||||| ||||||| |
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| T |
13883327 |
gtttgttcaattgaatgtgaattttttaatgaacaattagcctaatccatggctattgttttgctgtccctttcaagagtatttatcaagtttcattggc |
13883228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 314
Target Start/End: Complemental strand, 13852779 - 13852673
Alignment:
| Q |
208 |
ctaataaagtttacggaaggggaagcatggtgttgcgagtagaaagagattatagtatactgtaaattgatggctgatgatgattcacaataatgtgaat |
307 |
Q |
| |
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||||||||| ||| |||||||| |||||||| ||| |||||||||||| |||||||||||| || | | || |||||| | ||||||||||||||| |
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| T |
13852779 |
ctaataaaggttatagaaggggaggcatggtgctgctagtagaaagagactatagtatactggaattagctgcttgatgaaaacgcacaataatgtgaat |
13852680 |
T |
|
| Q |
308 |
gtaaata |
314 |
Q |
| |
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| ||||| |
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| T |
13852679 |
gcaaata |
13852673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 14392025 - 14392106
Alignment:
| Q |
9 |
cctcttactaccacaatctagattaaattaaaatgcaactaaaacaagtttttgaccct--gtttgttcaatagaatgtggatttt |
92 |
Q |
| |
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||||||||||||||| ||| ||||||| ||||||||| ||||| |||||||||||| |||| |||||||||||||||||||| |
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|
| T |
14392025 |
cctcttactaccaca-tctgtattaaataaaaatgcaattaaaa---gtttttgacccttggtttattcaatagaatgtggatttt |
14392106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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