View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0298-INSERTION-5 (Length: 279)
Name: NF0298-INSERTION-5
Description: NF0298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0298-INSERTION-5 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 274
Target Start/End: Complemental strand, 5484302 - 5484036
Alignment:
| Q |
8 |
aacatgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccaacccatgaagaaaggcaattggatggatctttgagatctatt |
107 |
Q |
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| T |
5484302 |
aacatgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccaactcatgaagaaaggcaattggatggatctttgagatctatt |
5484203 |
T |
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| Q |
108 |
ttgatgttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggctatccactaagtactgggatgatgcaaaaataaagagaagaa |
207 |
Q |
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| T |
5484202 |
ttgatgttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggctatccactaagtactgggatgatgcaaaaataaagagaagaa |
5484103 |
T |
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| Q |
208 |
taaggtaatatcttatgatgatttttgtgtttgccatcttctaacagagaatatcagatggtttcat |
274 |
Q |
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| T |
5484102 |
taaggtaatatcttatgatgatttttgtgtttgccatcttccaacagagaatatcagatggtttcat |
5484036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 5489487 - 5489294
Alignment:
| Q |
8 |
aacatgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccaacccatgaagaaaggcaattggatggatctttgagatctatt |
107 |
Q |
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| T |
5489487 |
aacatgaccagtttggttgtcacattctatacccttccaattacaacaatcttccccaacccatgaagaaaggcaatttgaaggatccttgagatctttt |
5489388 |
T |
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| Q |
108 |
ttgatgttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggctatccactaagtactgggatgatgcaaaaataaaga |
201 |
Q |
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| T |
5489387 |
ttgattttaaggagtgccactctctcttccttaatgcaaagagtactaacattaaggctagtcactaagtactgggttgatgcaaaaagaaaga |
5489294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 5476363 - 5476208
Alignment:
| Q |
11 |
atgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccaacccatgaagaaaggcaattggatggatctttgagatctattttg |
110 |
Q |
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| T |
5476363 |
atgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccgacccatgacgaaaggcaattggaaggatcattgagatcttttttg |
5476264 |
T |
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| Q |
111 |
atgttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggct |
166 |
Q |
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| T |
5476263 |
atgttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggct |
5476208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 5495270 - 5495076
Alignment:
| Q |
7 |
aaacatgaccagtttggttgtcacattcaatacccttccaattacagcaatcttccccaacccatgaagaaaggcaattggatggatctttgagatctat |
106 |
Q |
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||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| | |
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| T |
5495270 |
aaacatgaccagtttggttgttacattgtatacccttccaattacagcaatcttccccgacccatgaagaaagacaattggatggatctttgagatcttt |
5495171 |
T |
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| Q |
107 |
tttgatgttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggctatccactaagtactgggatgatgcaaaaataaaga |
201 |
Q |
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| T |
5495170 |
tttgattttaaggagtgccactctctcttccttaatgcaaagagtgctaacattattgctactcactacatattgggttgatgcaaaaagaaaga |
5495076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 5481447 - 5481295
Alignment:
| Q |
14 |
accagtttggttgtcacattcaatacccttccaattacagcaatcttccccaacccatgaagaaaggcaattggatggatctttgagatctattttgatg |
113 |
Q |
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| T |
5481447 |
accagtttgatagtcacattctataccaatccagcgacaacaatctttcccaacccatgaagaaaggcaattgtaaggatcattgagatcttttttgacg |
5481348 |
T |
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| Q |
114 |
ttaaggagtgccactctctcttccttaatgcaaagagtgctaacattaaggct |
166 |
Q |
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| T |
5481347 |
ttaaggagtgccattctctcttccttaatgcaaagagtgctaacattaaggct |
5481295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 5466684 - 5466542
Alignment:
| Q |
24 |
ttgtcacattcaatacccttccaattacagcaatcttccccaacccatgaagaaaggcaattggatggatctttgagatctattttgatgttaaggagtg |
123 |
Q |
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|||||||||| ||||| |||| | ||||||||| | ||||||||| || |||||||||||||| ||||| || |||||| |||| ||||||||||||| |
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| T |
5466684 |
ttgtcacattgtataccaatccagtcacagcaatccttcccaacccaagaggaaaggcaattggaaggatcgttcagatctttttttatgttaaggagtg |
5466585 |
T |
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| Q |
124 |
ccactctctcttccttaatgcaaagagtgctaacattaaggct |
166 |
Q |
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|||| |||||||| |||||||||||||||||||||| |||||| |
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| T |
5466584 |
ccaccctctcttctttaatgcaaagagtgctaacatcaaggct |
5466542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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