View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0298-INSERTION-6 (Length: 241)

Name: NF0298-INSERTION-6
Description: NF0298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0298-INSERTION-6
NF0298-INSERTION-6
[»] chr1 (3 HSPs)
chr1 (7-234)||(52092660-52092886)
chr1 (33-234)||(52082489-52082690)
chr1 (127-234)||(19468489-19468596)
[»] chr8 (6 HSPs)
chr8 (126-222)||(27922509-27922605)
chr8 (132-222)||(17636403-17636493)
chr8 (132-222)||(18315275-18315365)
chr8 (126-222)||(32151302-32151398)
chr8 (126-220)||(17628018-17628112)
chr8 (180-220)||(21235613-21235653)
[»] chr5 (4 HSPs)
chr5 (126-222)||(32267476-32267572)
chr5 (130-222)||(41889556-41889648)
chr5 (127-217)||(41901542-41901632)
chr5 (126-199)||(20478107-20478180)
[»] chr4 (20 HSPs)
chr4 (126-220)||(1548428-1548522)
chr4 (126-222)||(8187093-8187189)
chr4 (35-203)||(1754429-1754589)
chr4 (129-222)||(7307864-7307957)
chr4 (126-222)||(546914-547010)
chr4 (126-222)||(1524488-1524584)
chr4 (132-234)||(532196-532298)
chr4 (126-220)||(553480-553574)
chr4 (126-223)||(3438567-3438663)
chr4 (137-201)||(640927-640991)
chr4 (126-222)||(1513409-1513505)
chr4 (33-149)||(6006235-6006351)
chr4 (126-222)||(8184032-8184128)
chr4 (126-220)||(1552771-1552865)
chr4 (156-222)||(12121459-12121525)
chr4 (126-195)||(558499-558568)
chr4 (126-194)||(1508033-1508101)
chr4 (33-89)||(1528338-1528394)
chr4 (126-222)||(1537769-1537865)
chr4 (126-202)||(55908750-55908826)
[»] chr6 (17 HSPs)
chr6 (126-222)||(6432162-6432258)
chr6 (124-223)||(6423216-6423315)
chr6 (131-200)||(6585261-6585330)
chr6 (124-199)||(6426510-6426585)
chr6 (127-218)||(14802338-14802429)
chr6 (126-199)||(6394865-6394938)
chr6 (129-222)||(6410010-6410103)
chr6 (129-199)||(10579761-10579831)
chr6 (126-194)||(6402861-6402929)
chr6 (126-210)||(6594620-6594704)
chr6 (126-210)||(14820694-14820778)
chr6 (132-199)||(6415973-6416040)
chr6 (126-199)||(6596953-6597026)
chr6 (130-199)||(7119162-7119231)
chr6 (130-199)||(7131640-7131709)
chr6 (139-199)||(6589348-6589408)
chr6 (180-220)||(12102321-12102361)
[»] chr3 (8 HSPs)
chr3 (126-222)||(51113783-51113879)
chr3 (126-222)||(51120895-51120991)
chr3 (71-218)||(33714861-33715008)
chr3 (71-209)||(33708989-33709127)
chr3 (126-199)||(13470757-13470830)
chr3 (140-207)||(37580837-37580904)
chr3 (137-207)||(37587571-37587641)
chr3 (21-93)||(514859-514931)
[»] chr2 (4 HSPs)
chr2 (140-222)||(32785774-32785856)
chr2 (132-190)||(44575529-44575587)
chr2 (126-218)||(45245091-45245183)
chr2 (126-202)||(1037686-1037762)
[»] scaffold0041 (1 HSPs)
scaffold0041 (126-197)||(39185-39256)
[»] chr7 (1 HSPs)
chr7 (126-199)||(15092176-15092249)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 234
Target Start/End: Original strand, 52092660 - 52092886
Alignment:
Q  7 acacacacctcacgacaacctcgtatatttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgtgatatgatcacaccgtt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  52092660 acacacacctcacgacaacctcgtatatttatctctctcaatcgtgtgcagtttt-tactacgtgcctcactcctttctctgtgatatgatcacaccgtt 52092758  T
Q  107 ccaagtccaaatgtagtatcccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttgga 206  Q
    |||||||||| ||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  52092759 ccaagtccaattgtagtagcccacaaaaactctttgagatcacatacaatgtgtcatcatcaatttttgtctttgccaagttcaacacctccaatttgga 52092858  T
Q  207 aacttgaaagttcattgaaagtagattc 234  Q
    ||||||||||||||||||||||||||||    
T  52092859 aacttgaaagttcattgaaagtagattc 52092886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 52082489 - 52082690
Alignment:
Q  33 atttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgtgatatgatcacaccgttccaagtccaaatgtagtatcccacaa 132  Q
    |||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  52082489 atttatctctctcagtcgtgtgcagttttctactacgtgcccgactcctttctctgtgatatgatcacaccgttccaagtccaattgtagtatcccacaa 52082588  T
Q  133 caactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagat 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52082589 caactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagat 52082688  T
Q  233 tc 234  Q
    ||    
T  52082689 tc 52082690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 234
Target Start/End: Complemental strand, 19468596 - 19468489
Alignment:
Q  127 ccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaa 226  Q
    ||||||||  |||||||||||||||| | ||||||||||||||  ||||| | |||||| |||||||||||||  |||| ||||  |||||||| |  ||    
T  19468596 ccacaacagttctttgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaaagttcactccaa 19468497  T
Q  227 gtagattc 234  Q
    ||||||||    
T  19468496 gtagattc 19468489  T

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Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 27922509 - 27922605
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 222  Q
    ||||||||||||||||||||||| ||| | || |||||||||||  ||||| | |||||||||||||||||||||||||| ||||| ||||||||||    
T  27922509 cccacaacaactctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttcatt 27922605  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 222
Target Start/End: Complemental strand, 17636493 - 17636403
Alignment:
Q  132 acaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 222  Q
    |||||||||||||||||||||||||| |||||| |||| |  ||| | |||||||||||||||||||||||||| ||||| ||||||||||    
T  17636493 acaactctttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaacttcaaagttcatt 17636403  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 222
Target Start/End: Complemental strand, 18315365 - 18315275
Alignment:
Q  132 acaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 222  Q
    ||||||||||||||||||||| | || ||||||||||| |||||| | |||||||||||||||||||| ||||| ||||| ||||||||||    
T  18315365 acaactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcatt 18315275  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 32151302 - 32151398
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 222  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||   ||||   ||||||||| ||||||||||  ||||||||||  |||||||||    
T  32151302 cccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccagattggaaacttcgaagttcatt 32151398  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 220
Target Start/End: Complemental strand, 17628112 - 17628018
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttca 220  Q
    |||| ||||| ||||||||||||||   | || || |||||||| | | || | |||||||||||||||||||||||| |||| || ||||||||    
T  17628112 cccaaaacaattctttgagatcacacggagtgctttatcatcaactctagtatgtgacaagttcaacacctccaatttagaaagtttaaagttca 17628018  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 21235613 - 21235653
Alignment:
Q  180 tgacaagttcaacacctccaatttggaaacttgaaagttca 220  Q
    |||||||||||||||||||| ||||| ||||| ||||||||    
T  21235613 tgacaagttcaacacctccagtttgggaacttcaaagttca 21235653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 32267476 - 32267572
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 222  Q
    ||||||||||||||||||||||| ||| | || ||||||||||| | |||| | |||||||||||| ||||||||||||| ||||| ||||||||||    
T  32267476 cccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagttcatt 32267572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 41889648 - 41889556
Alignment:
Q  130 caacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 222  Q
    ||||||||||||||||||  ||| | |||||||||||||| |||||| | ||| |||||||||||||||||||||| ||||| ||||||||||    
T  41889648 caacaactctttgagatcttataaagtgtttcatcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatt 41889556  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 41901632 - 41901542
Alignment:
Q  127 ccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagt 217  Q
    |||||||||||||||||||||| ||| | || ||||||||||| |||||| | |||||||||||||||||||| ||||| ||||| |||||    
T  41901632 ccacaacaactctttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 20478180 - 20478107
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 199  Q
    |||||||||| || ||||||||||| | |||||||| |||||||  ||||| | ||||||||||||||||||||    
T  20478180 cccacaacaattccttgagatcacagataatgtttcgtcatcaacatttgtatatgacaagttcaacacctcca 20478107  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 126 - 220
Target Start/End: Complemental strand, 1548522 - 1548428
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttca 220  Q
    ||||||||||||||||||||||||||  | |||||||||||||||  |||| | |||||||||||||||||||| ||||| || || ||||||||    
T  1548522 cccacaacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 1548428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 8187189 - 8187093
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 222  Q
    |||||||||||||||||| ||  |||| | ||||| |||||||| | |||| | |||||||||||||||||||| |||||||| || ||||||||||    
T  8187189 cccacaacaactctttgaaattgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcatt 8187093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 1754429 - 1754589
Alignment:
Q  35 ttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgtgatatgatcacaccgttccaagtccaaatgtagtatcccacaaca 134  Q
    |||||||| |||  |||||||| ||||||||||| ||| ||||||||||||||||||||| || |||   ||| || ||||| || ||||  ||| | ||    
T  1754429 ttatctctttcaggcgtgtgcatttttctactacttgcttcactcctttctctgtgatattataacatttttctaaatccaattgcagtagtccagagca 1754528  T
Q  135 actctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaattt 203  Q
    ||||||||||||||  ||        |||| | |||||||||||| |||||||||||||||||||||||    
T  1754529 actctttgagatcatgta--------catccttaatttttgtcttcgacaagttcaacacctccaattt 1754589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 7307864 - 7307957
Alignment:
Q  129 acaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 222  Q
    |||||||||||||||||||| |   | || ||||||||||| || ||| | |||||||||||| ||||||||||||| ||||| ||||||||||    
T  7307864 acaacaactctttgagatcatacgtagtgcttcatcatcaacttctgtatatgacaagttcaatacctccaatttgggaactttaaagttcatt 7307957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 546914 - 547010
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 222  Q
    ||||||||||||||||||||||||||| | |||||||||||  |   ||||   ||||||||||| |||||||||||| | ||||| ||||||||||    
T  546914 cccacaacaactctttgagatcacatagagtgtttcatcattgacaattgtacgtgacaagttcaccacctccaatttaggaacttcaaagttcatt 547010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 1524584 - 1524488
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 222  Q
    ||||| |||||||| |||||||| ||| | ||||||||||||||   ||||   |||||| |||||||||||||| |||| ||||| ||||||||||    
T  1524584 cccacgacaactctgtgagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaacttcaaagttcatt 1524488  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 234
Target Start/End: Original strand, 532196 - 532298
Alignment:
Q  132 acaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtaga 231  Q
    |||| |||||||| ||||||| |   ||||||||||||| ||||| | |||||||||||||||||| |  ||||  |||| ||||||||||  |||||||    
T  532196 acaattctttgaggtcacataaagcttttcatcatcaatgtttgtatatgacaagttcaacacctctagcttggggacttcaaagttcattccaagtaga 532295  T
Q  232 ttc 234  Q
    |||    
T  532296 ttc 532298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 220
Target Start/End: Original strand, 553480 - 553574
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttca 220  Q
    |||| ||||||||||||| |||||||  | || ||||||||||| | ||||   |||||||||||||||||||| ||||  ||||| ||||||||    
T  553480 cccagaacaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaagttca 553574  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 223
Target Start/End: Complemental strand, 3438663 - 3438567
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattg 223  Q
    ||||||||||||||||||||| ||||  | | ||| |||||||| | |||| | ||||||| |||| ||||||||||| ||||| | |||||||||||    
T  3438663 cccacaacaactctttgagattacatggagtattt-atcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttcattg 3438567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 640927 - 640991
Alignment:
Q  137 tctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaat 201  Q
    |||||||| |||| || | ||||||||||||||  ||||| | ||||||||||||||||||||||    
T  640927 tctttgaggtcacgtagagtgtttcatcatcaacgtttgtatctgacaagttcaacacctccaat 640991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 1513505 - 1513409
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 222  Q
    ||||| ||||| ||||||||| || || | ||||||||||||||  |||||   ||||||||||||||| || | ||||| ||||| ||||||||||    
T  1513505 cccacgacaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaaagttcatt 1513409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 6006235 - 6006351
Alignment:
Q  33 atttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgtgatatgatcacaccgttccaagtccaaatgtagtatcccacaa 132  Q
    |||||||||||||||| || ||||||||||||| || ||| ||||||| |||| ||||| || || ||| ||| |||| || |  || |||| |||| |     
T  6006235 atttatctctctcaattgtttgcagttttctacgacttgcatcactcccttctttgtgacatcataacaacgtcccaaatcaagttgcagtagcccaaag 6006334  T
Q  133 caactctttgagatcac 149  Q
    |||||| ||||||||||    
T  6006335 caactcattgagatcac 6006351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 8184128 - 8184032
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 222  Q
    |||||||||||||||||||||  |||| | || |  |||||||| | |||| | |||||||||||||||||| | ||| | ||||| ||||||||||    
T  8184128 cccacaacaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagttcatt 8184032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 220
Target Start/End: Complemental strand, 1552865 - 1552771
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttca 220  Q
    ||||| |||| ||||||| |||||||  | ||||||||||| ||| ||||| | |||||| |||||||| |||| ||||| || || ||||||||    
T  1552865 cccacgacaattctttgatatcacattgagtgtttcatcattaatatttgtatgtgacaaattcaacacttccagtttgggaatttcaaagttca 1552771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 12121525 - 12121459
Alignment:
Q  156 tgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 222  Q
    ||||||||||||||  ||||| | ||||||||||||||| || | ||||| ||||| ||||||||||    
T  12121525 tgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcatt 12121459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 558499 - 558568
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacc 195  Q
    ||||| ||||||||||||||||||||  | || |||||||||||| | |||   ||||||||||||||||    
T  558499 cccacgacaactctttgagatcacatggagtgcttcatcatcaatatatgttaatgacaagttcaacacc 558568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 1508101 - 1508033
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacac 194  Q
    ||||| ||||| ||||||||| ||| ||| ||||||||||||||  || || | |||||||||||||||    
T  1508101 cccacgacaacactttgagattacacacagtgtttcatcatcaacattggtatgtgacaagttcaacac 1508033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 1528394 - 1528338
Alignment:
Q  33 atttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgt 89  Q
    |||||||||||||| | |||||||||||||||| || ||| | ||||| ||||||||    
T  1528394 atttatctctctcagttgtgtgcagttttctacaacttgcatgactccattctctgt 1528338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 1537865 - 1537769
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 222  Q
    ||||| ||||| ||||||||| ||| ||| |||||  |||| ||  ||||| | ||||||||||||||| || | ||||| ||||| ||||||||||    
T  1537865 cccacgacaacactttgagattacacacagtgttttgtcattaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcatt 1537769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 55908826 - 55908750
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatt 202  Q
    |||||||||| |||||||||||| ||| | ||||||||||||||    ||| | ||||||||| |||||||| ||||    
T  55908826 cccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaatt 55908750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 6432162 - 6432258
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 222  Q
    |||||||||| ||||| |||||||||| | ||||||||||||||   |||| ||||||||||||||||||| ||  |||| ||||| ||||||||||    
T  6432162 cccacaacaattctttaagatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcatt 6432258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 223
Target Start/End: Original strand, 6423216 - 6423315
Alignment:
Q  124 atcccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattg 223  Q
    |||||||||||||||||||||||| |||| | ||||| |||   || | |||| ||||||||||||||||||||||  |||| ||||| |||||||||||    
T  6423216 atcccacaacaactctttgagatcgcatagagtgttttatcgctaactcttgtatttgacaagttcaacacctccagcttgggaacttaaaagttcattg 6423315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 6585330 - 6585261
Alignment:
Q  131 aacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaa 200  Q
    |||||||||||||||||||||| | ||||||||||||||  ||||| | |||||||||||| ||||||||    
T  6585330 aacaactctttgagatcacatagagtgtttcatcatcaacctttgtatctgacaagttcaatacctccaa 6585261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 6426510 - 6426585
Alignment:
Q  124 atcccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 199  Q
    |||| ||||||| ||||||||||| |||| || ||||||||||||||  |||| |||||||| |||||||||||||    
T  6426510 atccgacaacaattctttgagatcgcataaaaagtttcatcatcaatgcttgtgtttgacaaattcaacacctcca 6426585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 218
Target Start/End: Original strand, 14802338 - 14802429
Alignment:
Q  127 ccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagtt 218  Q
    ||||||||| ||||||| |||||||| | ||||||||||||||  ||||| |||||||| |||||||| ||||  |||| ||||| ||||||    
T  14802338 ccacaacaattctttgaaatcacatagagtgtttcatcatcaacctttgtatttgacaaattcaacacttccatcttgggaacttcaaagtt 14802429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 6394865 - 6394938
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 199  Q
    |||||||||| |||||||||||||| | |  |||||||||||||   |||| ||||||||||||||||||||||    
T  6394865 cccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctcca 6394938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 6410010 - 6410103
Alignment:
Q  129 acaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 222  Q
    ||||||| |||||||||||||||| |  |||||||||||||   |||| |||||| |||||||||||| ||  |||| ||||| ||||||||||    
T  6410010 acaacaattctttgagatcacataaagagtttcatcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaaagttcatt 6410103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 10579831 - 10579761
Alignment:
Q  129 acaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 199  Q
    ||||||| |||||||||||  ||| | ||||| |||||||| |||||| | ||||||||||||||||||||    
T  10579831 acaacaattctttgagatcgaatagagtgttttatcatcaacttttgtatatgacaagttcaacacctcca 10579761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 6402861 - 6402929
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacac 194  Q
    ||||| |||| |||||||||||||||| | ||||||||||||||  || || | |||||||||||||||    
T  6402861 cccactacaattctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacac 6402929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 210
Target Start/End: Complemental strand, 6594704 - 6594620
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaact 210  Q
    |||||||||| ||||||||||||||   | ||| ||||||||||  | ||| |||||||||| ||||||||||| ||||| ||||    
T  6594704 cccacaacaattctttgagatcacacgtagtgtctcatcatcaacctctgtatttgacaagtacaacacctccagtttgggaact 6594620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 210
Target Start/End: Original strand, 14820694 - 14820778
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaact 210  Q
    |||||||||| |||| ||||||| ||| | |||||||| |||||  ||||| ||||| |||||||||||||| || |||| ||||    
T  14820694 cccacaacaattcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgggaact 14820778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 6415973 - 6416040
Alignment:
Q  132 acaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 199  Q
    |||| |||||||||||||||| |  |||| ||||| ||  ||||| ||||||||||||||||||||||    
T  6415973 acaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctcca 6416040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 6597026 - 6596953
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 199  Q
    |||| ||||| ||||||||||  | || | ||||||||||||||  |||||  |||||||||||||||||||||    
T  6597026 cccagaacaattctttgagatagcgtagagtgtttcatcatcaacatttgtacttgacaagttcaacacctcca 6596953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 7119162 - 7119231
Alignment:
Q  130 caacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 199  Q
    |||||| |||| ||||||||||  | ||||||||||||||  || || | ||||||||||||||||||||    
T  7119162 caacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctcca 7119231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 7131640 - 7131709
Alignment:
Q  130 caacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 199  Q
    |||||| |||| ||||||||||  | ||||||||||||||  || || | ||||||||||||||||||||    
T  7131640 caacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctcca 7131709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 6589408 - 6589348
Alignment:
Q  139 tttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 199  Q
    |||||||||| ||| | ||||| ||||| ||  ||||| ||||||||||||||||||||||    
T  6589408 tttgagatcagatatagtgttttatcattaacatttgtatttgacaagttcaacacctcca 6589348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 12102321 - 12102361
Alignment:
Q  180 tgacaagttcaacacctccaatttggaaacttgaaagttca 220  Q
    |||||||||||||||||||| ||||| ||||| ||||||||    
T  12102321 tgacaagttcaacacctccagtttgggaacttcaaagttca 12102361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 51113879 - 51113783
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 222  Q
    ||||||||||||||| ||||||||||| | ||||||||||||||   |||| ||||||||||  |||||||||| ||||| | ||| ||||||||||    
T  51113879 cccacaacaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcatt 51113783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 51120991 - 51120895
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 222  Q
    ||||| ||||||||||||||| ||||| | | |||||||||||| | |||| |  ||||||||||||||||||||||||  ||||| ||||||||||    
T  51120991 cccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 51120895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 218
Target Start/End: Complemental strand, 33715008 - 33714861
Alignment:
Q  71 gcctcactcctttctctgtgatatgatcacaccgttccaagtccaaatgtagtatcccacaacaactctttgagatcacatacaatgtttcatcatcaat 170  Q
    |||||||||| ||||| |||| ||||| |||   ||||| ||||| |||||| | || |   ||||||||||| ||| |||||||||   ||||||||||    
T  33715008 gcctcactcccttctccgtgacatgatgacaatcttccaggtccagatgtagaagccgagggcaactctttgaaatcgcatacaatgcgccatcatcaat 33714909  T
Q  171 ttttgtctttgacaagttcaacacctccaatttggaaacttgaaagtt 218  Q
    | |||  ||||||||||||| |||||||| ||||||||||| ||||||    
T  33714908 tcttgagtttgacaagttcagcacctccagtttggaaacttcaaagtt 33714861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 33709127 - 33708989
Alignment:
Q  71 gcctcactcctttctctgtgatatgatcacaccgttccaagtccaaatgtagtatcccacaacaactctttgagatcacatacaatgtttcatcatcaat 170  Q
    |||||||||| ||||| |||| ||||| ||| | ||||| ||||| |||||| | || |   ||||||||||||||  |||||||||   ||||||||||    
T  33709127 gcctcactcccttctccgtgacatgatgacatccttccaggtccagatgtagaagccgagggcaactctttgagattgcatacaatgcaccatcatcaat 33709028  T
Q  171 ttttgtctttgacaagttcaacacctccaatttggaaac 209  Q
    | |||  | ||||||||||| |||||||| |||||||||    
T  33709027 tcttgagtctgacaagttcagcacctccagtttggaaac 33708989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 13470830 - 13470757
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 199  Q
    |||||||||| |||||||||||| ||| | ||||| ||||| ||  ||||| ||||||||||||||||||||||    
T  13470830 cccacaacaattctttgagatcatatagagtgttttatcattaacctttgtatttgacaagttcaacacctcca 13470757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 37580904 - 37580837
Alignment:
Q  140 ttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaa 207  Q
    |||||||||||||||||  || |||||||||| |||  |||||||||||||| ||||| | |||||||    
T  37580904 ttgagatcacatacaatactttatcatcaattcttgagtttgacaagttcaatacctcgagtttggaa 37580837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 37587641 - 37587571
Alignment:
Q  137 tctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaa 207  Q
    ||||||||||| ||||||||  || |||||||||| |||  | |||||||||||| ||||||| |||||||    
T  37587641 tctttgagatcgcatacaatactttatcatcaattcttgagtgtgacaagttcaatacctccagtttggaa 37587571  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 514931 - 514859
Alignment:
Q  21 acaacctcgtatatttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgtgata 93  Q
    |||||||| || ||| |||||||||| ||||||||||||||  || || ||| |||||||  |||||||||||    
T  514931 acaacctcttaaattgatctctctcagtcgtgtgcagtttttcaccacatgcttcactcccgtctctgtgata 514859  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 32785856 - 32785774
Alignment:
Q  140 ttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 222  Q
    ||||||||||||| | || ||||||||||||| |||| | |||||||||||||||||| | ||||| | ||| ||||||||||    
T  32785856 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaagttcatt 32785774  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 44575587 - 44575529
Alignment:
Q  132 acaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttca 190  Q
    ||||||||||||||||||||||||||| |||||||||| | |||| |||||||| ||||    
T  44575587 acaactctttgagatcacatacaatgtgtcatcatcaactcttgtttttgacaaattca 44575529  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 45245183 - 45245091
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagtt 218  Q
    ||||| ||||||||||||||||||||  | ||||||||||||||   |||||| |||||| ||||||||||| | ||| | ||||| ||||||    
T  45245183 cccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaagtt 45245091  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 1037762 - 1037686
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatt 202  Q
    |||||||||| |||||||||||| ||| | ||||||||||||||    ||| | ||||||||| |||||||| ||||    
T  1037762 cccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaatt 1037686  T

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Target: scaffold0041 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 39185 - 39256
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctc 197  Q
    ||||| ||||||||||||||||||||| | ||||||||||| ||  |||||   || |||||||||||||||    
T  39185 cccactacaactctttgagatcacataaagtgtttcatcattaacctttgtaaatgtcaagttcaacacctc 39256  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 15092249 - 15092176
Alignment:
Q  126 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 199  Q
    |||||||||| ||||||||||| |||| | ||||| ||||| ||  ||||| | |||||| |||||||||||||    
T  15092249 cccacaacaattctttgagatcgcatagagtgttttatcattaacctttgtttctgacaaattcaacacctcca 15092176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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