View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0298_high_2 (Length: 338)
Name: NF0298_high_2
Description: NF0298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0298_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 5484627 - 5484313
Alignment:
| Q |
1 |
gagcagagagccaacttaagtctctgaccataattggcgagaattggtcagagatatcaaggtagcgcaaatttgacaaattgccaagatgagtagggac |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5484627 |
gagcagagagccaacttaagtctctgcccataattggcgagaattggtcagagatatcaaggtagcgcaaatttgacaaattgccaagatgattagggac |
5484528 |
T |
|
| Q |
101 |
aactccagtaaaatttgcatttgataggtcaaggtaattcaacattttgagagaaccaatatgttctggaatgggaattccttcgaaatcattgaagctt |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5484527 |
aattccagtaaaatttgcatttgataggtcaaggtaattcaacattttgagagaaccaatatgttctggaatgggaattccttcgaaatcattgaagctt |
5484428 |
T |
|
| Q |
201 |
aagtccaagtgactcaagtgtgtcaagtcggcgaatgaaggatttatctcaccaccgaaggctgactgtgacaggatagttgtggttctggtgcagataa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5484427 |
aagtccaagtgactcaagtgtgtcaagtcggcgaatgaaggatttatctcaccaccgaaggctgactgtgacagtatagttgtggttctggtgcagataa |
5484328 |
T |
|
| Q |
301 |
gatagggcttgagct |
315 |
Q |
| |
|
||||||||||||||| |
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| T |
5484327 |
gatagggcttgagct |
5484313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 5481759 - 5481515
Alignment:
| Q |
5 |
agagagccaacttaagtctctgaccataattggcgagaattggtcagagatatcaaggtagcgcaaatttgacaaattgccaagatgagtagggacaact |
104 |
Q |
| |
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||||||||||||||||||||||||| || || ||| ||| || |||||||||||| || |||||||||||| |||||||||||||| | |||| | | |
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| T |
5481759 |
agagagccaacttaagtctctgacccaaagtgacgaaaatgagttagagatatcaagataatgcaaatttgacagattgccaagatgaggaaggaccatt |
5481660 |
T |
|
| Q |
105 |
ccagtaaaatttgcatttgataggtcaaggtaattcaacattttgagagaaccaatatgttctggaatgggaattccttcgaaatcattgaagcttaagt |
204 |
Q |
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|| |||||||||||||| |||| |||||||||||| | ||| ||||||||||||||| |||||||||||||| ||||| ||||||||| ||||||| || |
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| T |
5481659 |
cctgtaaaatttgcattagataagtcaaggtaattgagcatattgagagaaccaataaattctggaatgggaactcctttgaaatcattaaagcttaggt |
5481560 |
T |
|
| Q |
205 |
ccaagtgactcaagtgtgtcaagtcggcgaatgaaggatttatct |
249 |
Q |
| |
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||||||||||||| ||| | |||| | |||||||||||||||| |
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| T |
5481559 |
ccaagtgactcaaatgttttaagttaactaatgaaggatttatct |
5481515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 2 - 316
Target Start/End: Complemental strand, 5495593 - 5495279
Alignment:
| Q |
2 |
agcagagagccaacttaagtctctgaccataattggcgagaattggtcagagatatcaaggtagcgcaaatttgacaaattgccaagatgagtagggaca |
101 |
Q |
| |
|
||||||||||||||| |||||||||||| || | || ||| || |||||||||||| || |||| |||||||||||||||||||||| ||||| |
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| T |
5495593 |
agcagagagccaactaaagtctctgacccaaagggatgaaaatggggtagagatatcaagataatgcaagtttgacaaattgccaagatgaggggggacc |
5495494 |
T |
|
| Q |
102 |
actccagtaaaatttgcatttgataggtcaaggtaattcaacattttgagagaaccaatatgttctggaatgggaattccttcgaaatcattgaagctta |
201 |
Q |
| |
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| ||||| ||||| || || ||||| |||||||||||| | ||| ||||| ||||||||| |||||||||||||| ||||||||||||||| | |||| |
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| T |
5495493 |
attccagaaaaatatgaatctgataagtcaaggtaattgagcatattgagggaaccaataaattctggaatgggaactccttcgaaatcattatatctta |
5495394 |
T |
|
| Q |
202 |
agtccaagtgactcaagtgtgtcaagtcggcgaatgaaggatttatctcaccaccgaaggctgactgtgacaggatagttgtggttctggtgcagataag |
301 |
Q |
| |
|
||||||||||||||||||| ||||||| || |||||||||||||||| |||||| |||| ||| |||| | ||| || ||| || |||||||||| |
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| T |
5495393 |
ggtccaagtgactcaagtgtttcaagtcagccaatgaaggatttatcttaccaccaaagggagacagtgaaaatatacttacagttttgatgcagataag |
5495294 |
T |
|
| Q |
302 |
atagggcttgagctt |
316 |
Q |
| |
|
||||||| ||||||| |
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| T |
5495293 |
atagggcctgagctt |
5495279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 50 - 261
Target Start/End: Complemental strand, 5489763 - 5489552
Alignment:
| Q |
50 |
agagatatcaaggtagcgcaaatttgacaaattgccaagatgagtagggacaactccagtaaaatttgcatttgataggtcaaggtaattcaacattttg |
149 |
Q |
| |
|
|||||||||||| ||| | |||||||| ||||||||||||| ||| ||||| | |||||| ||||||||||| || | |||||||||||| | ||| ||| |
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|
| T |
5489763 |
agagatatcaagatagtgtaaatttgataaattgccaagattagtcgggaccattccagtgaaatttgcattggacaagtcaaggtaattgagcatattg |
5489664 |
T |
|
| Q |
150 |
agagaaccaatatgttctggaatgggaattccttcgaaatcattgaagcttaagtccaagtgactcaagtgtgtcaagtcggcgaatgaaggatttatct |
249 |
Q |
| |
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||| |||||||| ||||||||||||| |||||| || ||| | |||||| ||||||||||||||||||| ||||||| || |||||||||||||||| |
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| T |
5489663 |
agataaccaataaattctggaatgggagctccttcaaagtcactatagcttaggtccaagtgactcaagtgtttcaagtcagccaatgaaggatttatct |
5489564 |
T |
|
| Q |
250 |
caccaccgaagg |
261 |
Q |
| |
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|||||| |||| |
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| T |
5489563 |
taccaccaaagg |
5489552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 50 - 246
Target Start/End: Complemental strand, 5476638 - 5476442
Alignment:
| Q |
50 |
agagatatcaaggtagcgcaaatttgacaaattgccaagatgagtagggacaactccagtaaaatttgcatttgataggtcaaggtaattcaacattttg |
149 |
Q |
| |
|
|||||||||||| | | |||||||||||||||| ||||||| ||||||||| | ||| ||||| |||| ||| |||| |||||| ||||||| ||| ||| |
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| T |
5476638 |
agagatatcaagatggtgcaaatttgacaaattaccaagatcagtagggaccattcctgtaaattttgaattagataagtcaagataattcagcatattg |
5476539 |
T |
|
| Q |
150 |
agagaaccaatatgttctggaatgggaattccttcgaaatcattgaagcttaagtccaagtgactcaagtgtgtcaagtcggcgaatgaaggattta |
246 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| ||| | |||| | || | ||||||||||||||||||| |||||| || ||||||||||||| |
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| T |
5476538 |
agagaaccaataaattctggaatggaaattcctttgaagttattgtaactcaggtccaagtgactcaagtgtttcaagtaagccaatgaaggattta |
5476442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 5466953 - 5466771
Alignment:
| Q |
67 |
gcaaatttgacaaattgccaagatgagtagggacaactccagtaaaatttgcatttgataggtcaaggtaattcaacattttgagagaaccaatatgttc |
166 |
Q |
| |
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|||||||||||||||| || ||||||| |||||| | ||||| ||||||||||| |||| ||||||||||| | | | ||||||||||||||| ||| |
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| T |
5466953 |
gcaaatttgacaaatttccgagatgaggagggaccattccagaaaaatttgcatgggataaatcaaggtaattgagcgtattgagagaaccaataaattc |
5466854 |
T |
|
| Q |
167 |
tggaatgggaattccttcgaaatcattgaagcttaagtccaagtgactcaagtgtgtcaagtcggcgaatgaaggatttatct |
249 |
Q |
| |
|
|||||||||| ||||| ||||||||| |||| ||||||||||||||||| ||| | ||||| |||||||||||||||| |
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|
| T |
5466853 |
aggaatgggaactcctttgaaatcattatagctcaagtccaagtgactcaaatgttttaagtcaagtaatgaaggatttatct |
5466771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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