View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0298_low_1 (Length: 461)
Name: NF0298_low_1
Description: NF0298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0298_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 10 - 432
Target Start/End: Complemental strand, 8585627 - 8585205
Alignment:
| Q |
10 |
gcagagatcgacactggagcaccattcaagtctgttaaagaagctgttcttttgtttggagaaagagtcttagttggagaaatttatgccaacaagctca |
109 |
Q |
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| T |
8585627 |
gcagagattgacactggagcaccattcaagtctgttaaagaagctgttcttttgtttggagaaagagtcttagttggagaaatttatgccaacaagctca |
8585528 |
T |
|
| Q |
110 |
aagaggttctcatttttctctttctattcatgcctccattcatcaagttatattgttattgatatgtaaccaagtgtatgtttggattcacggtgatatt |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
8585527 |
aagaggttctcatttttctctttctattcatgcctccattcatcaagttatattgttattgttatgtaacgaagtgtatgtttggattcacggtgatatt |
8585428 |
T |
|
| Q |
210 |
gacagaatcaaagcgacacattataattttacactttagagcttaacaaaatcacgatatcactacaattttgtcaaactcactgctcatccaaacatgc |
309 |
Q |
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||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8585427 |
gacagaatcaaagtgacacatcataattttacactttagagcttaacaaaatcacgatatcactacaattttgtcaaactcactgcttatccaaacatgc |
8585328 |
T |
|
| Q |
310 |
attgagactggtcaatgaactttagttactcatgtgtttgtagtatatattttatgaattattttcaattttagaaccatcatttgttgacgaatgcatg |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8585327 |
attgagactggtcaatgaactttagttactcatgtgtttgtagtatatattttatgaattattttcaattttagaaccatcatttgttgtcgaatgcatg |
8585228 |
T |
|
| Q |
410 |
gcgcaactcatcaatgaggtttg |
432 |
Q |
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||||||||||||||||||||||| |
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| T |
8585227 |
gcgcaactcatcaatgaggtttg |
8585205 |
T |
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