View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0298_low_3 (Length: 274)
Name: NF0298_low_3
Description: NF0298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0298_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 34 - 239
Target Start/End: Complemental strand, 45787803 - 45787597
Alignment:
| Q |
34 |
cagagactgaaaagtatatatacatctaaa-ttaaatcaagccctaaacctaaaccaattctaaattccaagaatcactttcttcagtcttgatagtttc |
132 |
Q |
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| T |
45787803 |
cagagactgaaaattatatatacatctaaaattaaatcaagccctaaacctaaaccaattctaaattccaagaatcactttcttcagtcttgatagtttc |
45787704 |
T |
|
| Q |
133 |
tactgaatacgatggatccatcatcttattcacgtaacaacaaatttcccagaccttcatcaatgagaaaacctcacctctacttcctcatcgctttcct |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45787703 |
tactgaatacgatggatccatcatcttattcacgtaacaacaaatttcccagaccttcatcaatgagaaaacctcacctctacttcctcatcgctttcct |
45787604 |
T |
|
| Q |
233 |
ctgtgct |
239 |
Q |
| |
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||||||| |
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| T |
45787603 |
ctgtgct |
45787597 |
T |
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