View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0299Ase21 (Length: 415)
Name: NF0299Ase21
Description: NF0299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0299Ase21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 9 - 413
Target Start/End: Complemental strand, 2102925 - 2102521
Alignment:
| Q |
9 |
gggcttggttctgattatcttgctgaaatttattatgagcactnnnnnnncatctttgatttcataacgatggaagttgtaatttcagttcataacttct |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2102925 |
gggcttggttctgattatcttgctgaaatttattatgagcactaaaaaaacatctttgatttcataacgatggaagttgtaatttcagttcataacttct |
2102826 |
T |
|
| Q |
109 |
tttatatttggtcttgcatatgcaggtattgcttcttgatacctaaaagctatcctttagcttcggcaggtcctttgctttgtgctggaatcactgttta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2102825 |
tttatatttggtcttgcatatgcaggtattgcttcttgatacctaaaagctatcctttagcttcggcaggtcctttgctttgtgctggaatcactgttta |
2102726 |
T |
|
| Q |
209 |
ttctcccatgatgcgacataatatgaatcaacctggtaagtctcttggagtggttggtcttggnggnctcnnncatatggcagaaaaanttggtaaggca |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| |||| |||| |||||| |
|
|
| T |
2102725 |
ttctcccatgatgcgacataatatgaatcaacctggtaagtctcttggagtggttggtcttggtggcctcggtcatatggcagtaaaatttgggaaggca |
2102626 |
T |
|
| Q |
309 |
tnngggttgcgngtaacggntttcggnactaccnngncanagagagaggaggcgctgagcttncttggtgcanacccctttgttgnttcctcnaatcntg |
408 |
Q |
| |
|
| || ||||| ||||||| |||| | |||| | || ||| |||||||||||||||||| ||||||||| ||| ||||||| ||| || |||| | |
|
|
| T |
2102625 |
tttggtttgcgtgtaacggttttcagcactagtatgtcaaagaaagaggaggcgctgagctttcttggtgcagaccaatttgttgtttcatctaatcaag |
2102526 |
T |
|
| Q |
409 |
aagag |
413 |
Q |
| |
|
||||| |
|
|
| T |
2102525 |
aagag |
2102521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 63 - 405
Target Start/End: Complemental strand, 2096659 - 2096317
Alignment:
| Q |
63 |
tttgatttcataacgatggaagttgtaatttcagttcataacttcttttatatttggtcttgcatatgcaggtattgcttcttgatacctaaaagctatc |
162 |
Q |
| |
|
||||||||| ||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2096659 |
tttgatttcgtaataatggaggttgtaatttcagttcataacttcttttatatatggtcttgcatgtgcaggtattgcttcttgatacctaaaagctatc |
2096560 |
T |
|
| Q |
163 |
ctttagcttcggcaggtcctttgctttgtgctggaatcactgtttattctcccatgatgcgacataatatgaatcaacctggtaagtctcttggagtggt |
262 |
Q |
| |
|
|| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
2096559 |
ctctagcttcagcaggtcctttgctctgtgctggaatcactgtttattctcccatgattcgacataatatgaatcaacccggcaagtctcttggagtggt |
2096460 |
T |
|
| Q |
263 |
tggtcttggnggnctcnnncatatggcagaaaaanttggtaaggcatnngggttgcgngtaacggntttcggnactaccnngncanagagagaggaggcg |
362 |
Q |
| |
|
||||||||| || ||| |||||||| | |||| |||| ||||||| || ||||| ||||||| |||| | |||| | | || ||| |||||||||| |
|
|
| T |
2096459 |
tggtcttggtggcctcggtcatatggcggtaaaatttgggaaggcatttggtttgcgtgtaacggttttcagcactagcatgtcaaagaaagaggaggcg |
2096360 |
T |
|
| Q |
363 |
ctgagcttncttggtgcanacccctttgttgnttcctcnaatc |
405 |
Q |
| |
|
|||||| | ||||||||| ||| ||||||| ||| || |||| |
|
|
| T |
2096359 |
ctgagccttcttggtgcagaccaatttgttgtttcatctaatc |
2096317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University