View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0299Ase22 (Length: 667)

Name: NF0299Ase22
Description: NF0299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0299Ase22
NF0299Ase22
[»] chr3 (6 HSPs)
chr3 (9-230)||(50830400-50830621)
chr3 (9-230)||(50845232-50845453)
chr3 (284-501)||(50830675-50830892)
chr3 (284-501)||(50844961-50845178)
chr3 (627-661)||(50831020-50831054)
chr3 (627-661)||(50844799-50844833)
[»] chr8 (3 HSPs)
chr8 (72-219)||(13862949-13863095)
chr8 (301-369)||(38681638-38681706)
chr8 (301-369)||(38682891-38682959)
[»] chr4 (1 HSPs)
chr4 (72-219)||(52528245-52528391)
[»] scaffold0238 (1 HSPs)
scaffold0238 (301-364)||(5717-5780)
[»] chr2 (1 HSPs)
chr2 (301-364)||(10449556-10449619)
[»] chr1 (1 HSPs)
chr1 (301-364)||(12606178-12606241)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-119; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 50830400 - 50830621
Alignment:
Q  9 ttctccactctctaaagtccttttcccgatactgattttgtggtagacagtctctacatataaaccctcttacaataaaaccctagaaaaccaaattgca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50830400 ttctccactctctaaagtccttttcccgatactgattttgtggtagacagtctctacatataaaccctcttacaataaaaccctagaaaaccaaattgca 50830499  T
Q  109 caatcatattcaaaaacaataaagagaaaaccaaggtttcaattgctagaaataaaaattgatatgtgaatgggataaaataggcataaaattcaatggc 208  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50830500 caatcatattcaaaaacaataaggagaaaaccaaggtttcaattgctagaaataaaaattgatatgtgaatgggataaaataggcataaaattcaatggc 50830599  T
Q  209 gcaacacaacaaccaggaagag 230  Q
    ||||||||||||||||||||||    
T  50830600 gcaacacaacaaccaggaagag 50830621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 50845453 - 50845232
Alignment:
Q  9 ttctccactctctaaagtccttttcccgatactgattttgtggtagacagtctctacatataaaccctcttacaataaaaccctagaaaaccaaattgca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50845453 ttctccactctctaaagtccttttcccgatactgattttgtggtagacagtctctacatataaaccctcttacaataaaaccctagaaaaccaaattgca 50845354  T
Q  109 caatcatattcaaaaacaataaagagaaaaccaaggtttcaattgctagaaataaaaattgatatgtgaatgggataaaataggcataaaattcaatggc 208  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50845353 caatcatattcaaaaacaataaggagaaaaccaaggtttcaattgctagaaataaaaattgatatgtgaatgggataaaataggcataaaattcaatggc 50845254  T
Q  209 gcaacacaacaaccaggaagag 230  Q
    ||||||||||||||||||||||    
T  50845253 gcaacacaacaaccaggaagag 50845232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 284 - 501
Target Start/End: Original strand, 50830675 - 50830892
Alignment:
Q  284 tctatcacagttactaaaggagaaattagtgataaatgttcaacctggaggtgacatcgtcgaagaggtgttcgatttcgcaacgggagattctgattcg 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50830675 tctatcacagttactaaaggagaaattagtgataaatgttcaacctggaggtgacatcgtcgaagaggtgttcgatttcgcaacgggagattctgattcg 50830774  T
Q  384 tccaatcatgtgaccttcaacatccacatcttcgtatcttgaacacgtaaatctcaaaatgatcgcatgattacgcatccacagctaaatccgccgacgc 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50830775 tccaatcatgtgaccttcaacatccacatcttcgtatcttgaacacgtaaatctcaaaatgatcgcatgattacgcatccacagctaaatccgccaacgc 50830874  T
Q  484 aaaagctttcctgattcg 501  Q
    ||||||||||||||||||    
T  50830875 aaaagctttcctgattcg 50830892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 284 - 501
Target Start/End: Complemental strand, 50845178 - 50844961
Alignment:
Q  284 tctatcacagttactaaaggagaaattagtgataaatgttcaacctggaggtgacatcgtcgaagaggtgttcgatttcgcaacgggagattctgattcg 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50845178 tctatcacagttactaaaggagaaattagtgataaatgttcaacctggaggtgacatcgtcgaagaggtgttcgatttcgcaacgggagattctgattcg 50845079  T
Q  384 tccaatcatgtgaccttcaacatccacatcttcgtatcttgaacacgtaaatctcaaaatgatcgcatgattacgcatccacagctaaatccgccgacgc 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50845078 tccaatcatgtgaccttcaacatccacatcttcgtatcttgaacacgtaaatctcaaaatgatcgcatgattacgcatccacagctaaatccgccaacgc 50844979  T
Q  484 aaaagctttcctgattcg 501  Q
    ||||||||||||||||||    
T  50844978 aaaagctttcctgattcg 50844961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 627 - 661
Target Start/End: Original strand, 50831020 - 50831054
Alignment:
Q  627 gttggcatattgaaagaaaaacatgtctcggtaat 661  Q
    |||||||||||||||||| ||||||||||||||||    
T  50831020 gttggcatattgaaagaagaacatgtctcggtaat 50831054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 627 - 661
Target Start/End: Complemental strand, 50844833 - 50844799
Alignment:
Q  627 gttggcatattgaaagaaaaacatgtctcggtaat 661  Q
    |||||||||||||||||| ||||||||||||||||    
T  50844833 gttggcatattgaaagaagaacatgtctcggtaat 50844799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 1e-58; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 72 - 219
Target Start/End: Original strand, 13862949 - 13863095
Alignment:
Q  72 accctcttacaataaaaccctagaaaaccaaattgcacaatcatattcaaaaacaataaagagaaaaccaaggtttcaattgctagaaataaaaattgat 171  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  13862949 accctcttacagtaaaatcctagaaaaccaaattgcacaatcatattcaaaaacaataaggagaaaaccaaggtttcaattgctggaaataaaaattgat 13863048  T
Q  172 atgtgaatgggataaaataggcataaaattcaatggcgcaacacaaca 219  Q
    |||||||| |||||||||| |||| |||||||||||||||||||||||    
T  13863049 atgtgaataggataaaata-gcattaaattcaatggcgcaacacaaca 13863095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 369
Target Start/End: Complemental strand, 38681706 - 38681638
Alignment:
Q  301 aggagaaattagtgataaatgttcaacctggaggtgacatcgtcgaagaggtgttcgatttcgcaacgg 369  Q
    |||||| | ||| |||||||||| ||||||||||||||  |||||||||||  ||| ||||| ||||||    
T  38681706 aggagagagtagcgataaatgtttaacctggaggtgacgccgtcgaagagggattccatttctcaacgg 38681638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 369
Target Start/End: Complemental strand, 38682959 - 38682891
Alignment:
Q  301 aggagaaattagtgataaatgttcaacctggaggtgacatcgtcgaagaggtgttcgatttcgcaacgg 369  Q
    |||||| | ||| |||||||||| ||||||||||||||  |||||||||||  ||| ||||| ||||||    
T  38682959 aggagagagtagcgataaatgtttaacctggaggtgacgccgtcgaagagggattccatttctcaacgg 38682891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 72 - 219
Target Start/End: Original strand, 52528245 - 52528391
Alignment:
Q  72 accctcttacaataaaaccctagaaaaccaaattgcacaatcatattcaaaaacaataaagagaaaaccaaggtttcaattgctagaaataaaaattgat 171  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  52528245 accctcttacagtaaaatcctagaaaaccaaattgcacaatcatattcaaaaacaataaggagaaaaccaaggtttcaattgctggaaataaaaattgat 52528344  T
Q  172 atgtgaatgggataaaataggcataaaattcaatggcgcaacacaaca 219  Q
    |||||||| |||||||||| |||| |||||||||||||||||||||||    
T  52528345 atgtgaataggataaaata-gcattaaattcaatggcgcaacacaaca 52528391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 301 - 364
Target Start/End: Complemental strand, 5780 - 5717
Alignment:
Q  301 aggagaaattagtgataaatgttcaacctggaggtgacatcgtcgaagaggtgttcgatttcgc 364  Q
    |||||||| ||||||||||||| ||| || ||||||||| |||| ||||||||||| |||||||    
T  5780 aggagaaagtagtgataaatgtacaatctagaggtgacaccgtcaaagaggtgttcaatttcgc 5717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 301 - 364
Target Start/End: Complemental strand, 10449619 - 10449556
Alignment:
Q  301 aggagaaattagtgataaatgttcaacctggaggtgacatcgtcgaagaggtgttcgatttcgc 364  Q
    |||||||| ||||||||||||| ||| || ||||||||| |||| ||||||||||| |||||||    
T  10449619 aggagaaagtagtgataaatgtacaatctagaggtgacaccgtcaaagaggtgttcaatttcgc 10449556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 301 - 364
Target Start/End: Original strand, 12606178 - 12606241
Alignment:
Q  301 aggagaaattagtgataaatgttcaacctggaggtgacatcgtcgaagaggtgttcgatttcgc 364  Q
    |||||||| ||||||||||||| ||| || ||||||||| |||| ||||||||||| |||||||    
T  12606178 aggagaaagtagtgataaatgtacaatctagaggtgacaccgtcaaagaggtgttcaatttcgc 12606241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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