View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0299Ase25 (Length: 204)

Name: NF0299Ase25
Description: NF0299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0299Ase25
NF0299Ase25
[»] chr2 (5 HSPs)
chr2 (9-176)||(2644310-2644479)
chr2 (167-202)||(6761585-6761620)
chr2 (171-204)||(39377833-39377866)
chr2 (172-204)||(11711442-11711474)
chr2 (172-204)||(29866080-29866112)
[»] chr8 (2 HSPs)
chr8 (165-204)||(2339281-2339320)
chr8 (166-202)||(2229062-2229098)
[»] chr3 (4 HSPs)
chr3 (165-204)||(10049786-10049825)
chr3 (171-204)||(14768095-14768128)
chr3 (170-202)||(6086897-6086929)
chr3 (172-204)||(28945654-28945686)
[»] scaffold0024 (1 HSPs)
scaffold0024 (172-204)||(35952-35984)
[»] chr7 (1 HSPs)
chr7 (172-204)||(7107628-7107660)
[»] chr6 (3 HSPs)
chr6 (170-202)||(885598-885630)
chr6 (172-204)||(6045799-6045831)
chr6 (172-204)||(24949749-24949781)
[»] chr4 (2 HSPs)
chr4 (172-204)||(23125644-23125676)
chr4 (170-202)||(53621324-53621356)
[»] chr1 (1 HSPs)
chr1 (172-204)||(34718889-34718921)


Alignment Details
Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 9 - 176
Target Start/End: Complemental strand, 2644479 - 2644310
Alignment:
Q  9 gtttaccatccagttaagttctataatgattgagagattagtctttacagttccatacggaggatatctgatttacacaacnnnnnnnnn--ctctcaat 106  Q
    |||||||||||| |||| |||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||           ||||||||    
T  2644479 gtttaccatccaattaaattctataatgcttgagagattagtctttacagtttcatacggaagatatctgatttacacaacaaaaaaaaaaactctcaat 2644380  T
Q  107 taacaattgagagagttctctcaattgtcattgtgaaaacattgtcaataaacgattcataaaatatact 176  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  2644379 taacaattgagagagttctctcaattgtcattgtgaaaaaaatgtcaataaacgattcataaaatatact 2644310  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 167 - 202
Target Start/End: Complemental strand, 6761620 - 6761585
Alignment:
Q  167 aaaatatactcactccggtcctatttacaagagaca 202  Q
    ||||||||||| ||||||||||||||||||||||||    
T  6761620 aaaatatactccctccggtcctatttacaagagaca 6761585  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 39377833 - 39377866
Alignment:
Q  171 tatactcactccggtcctatttacaagagacaat 204  Q
    ||||||| ||||||||||||||||||||||||||    
T  39377833 tatactccctccggtcctatttacaagagacaat 39377866  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Complemental strand, 11711474 - 11711442
Alignment:
Q  172 atactcactccggtcctatttacaagagacaat 204  Q
    |||||| ||||||||||||||||||||||||||    
T  11711474 atactccctccggtcctatttacaagagacaat 11711442  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 29866080 - 29866112
Alignment:
Q  172 atactcactccggtcctatttacaagagacaat 204  Q
    |||||| ||||||||||||||||||||||||||    
T  29866080 atactccctccggtcctatttacaagagacaat 29866112  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 2339281 - 2339320
Alignment:
Q  165 ataaaatatactcactccggtcctatttacaagagacaat 204  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  2339281 ataatatatactccctccggtcctatttacaagagacaat 2339320  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 2229062 - 2229098
Alignment:
Q  166 taaaatatactcactccggtcctatttacaagagaca 202  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  2229062 taaaaaatactccctccggtcctatttacaagagaca 2229098  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 10049825 - 10049786
Alignment:
Q  165 ataaaatatactcactccggtcctatttacaagagacaat 204  Q
    ||||| ||||||| ||||||||||||||||||||||||||    
T  10049825 ataaattatactccctccggtcctatttacaagagacaat 10049786  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 14768095 - 14768128
Alignment:
Q  171 tatactcactccggtcctatttacaagagacaat 204  Q
    ||||||| ||||||||||||||||||||||||||    
T  14768095 tatactccctccggtcctatttacaagagacaat 14768128  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 6086897 - 6086929
Alignment:
Q  170 atatactcactccggtcctatttacaagagaca 202  Q
    |||||||| ||||||||||||||||||||||||    
T  6086897 atatactccctccggtcctatttacaagagaca 6086929  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 28945654 - 28945686
Alignment:
Q  172 atactcactccggtcctatttacaagagacaat 204  Q
    |||||| ||||||||||||||||||||||||||    
T  28945654 atactccctccggtcctatttacaagagacaat 28945686  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 35952 - 35984
Alignment:
Q  172 atactcactccggtcctatttacaagagacaat 204  Q
    |||||| ||||||||||||||||||||||||||    
T  35952 atactccctccggtcctatttacaagagacaat 35984  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 7107628 - 7107660
Alignment:
Q  172 atactcactccggtcctatttacaagagacaat 204  Q
    ||||||||||||||| |||||||||||||||||    
T  7107628 atactcactccggtcatatttacaagagacaat 7107660  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 885598 - 885630
Alignment:
Q  170 atatactcactccggtcctatttacaagagaca 202  Q
    |||||||| ||||||||||||||||||||||||    
T  885598 atatactccctccggtcctatttacaagagaca 885630  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Complemental strand, 6045831 - 6045799
Alignment:
Q  172 atactcactccggtcctatttacaagagacaat 204  Q
    |||||| ||||||||||||||||||||||||||    
T  6045831 atactccctccggtcctatttacaagagacaat 6045799  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Complemental strand, 24949781 - 24949749
Alignment:
Q  172 atactcactccggtcctatttacaagagacaat 204  Q
    |||||| ||||||||||||||||||||||||||    
T  24949781 atactccctccggtcctatttacaagagacaat 24949749  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 23125644 - 23125676
Alignment:
Q  172 atactcactccggtcctatttacaagagacaat 204  Q
    |||||| ||||||||||||||||||||||||||    
T  23125644 atactccctccggtcctatttacaagagacaat 23125676  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 53621324 - 53621356
Alignment:
Q  170 atatactcactccggtcctatttacaagagaca 202  Q
    |||||||| ||||||||||||||||||||||||    
T  53621324 atatactccctccggtcctatttacaagagaca 53621356  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 34718889 - 34718921
Alignment:
Q  172 atactcactccggtcctatttacaagagacaat 204  Q
    |||||| ||||||||||||||||||||||||||    
T  34718889 atactccctccggtcctatttacaagagacaat 34718921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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