View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0299Ase28 (Length: 78)
Name: NF0299Ase28
Description: NF0299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0299Ase28 |
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| [»] chr3 (4 HSPs) |
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| [»] scaffold1033 (1 HSPs) |
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| [»] scaffold1029 (1 HSPs) |
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| [»] scaffold0889 (1 HSPs) |
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| [»] scaffold0870 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 56; Significance: 7e-24; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-24
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 28580350 - 28580421
Alignment:
| Q |
7 |
aaaaacatattgcaaatttagaacaattgtatatatttgtacttcaattaaaatacttaccattctagaaat |
78 |
Q |
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| T |
28580350 |
aaaaagatattctaaatttagaacaattgtatatatttgtacttcaattaaaatacttaccattctggaaat |
28580421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 26316355 - 26316425
Alignment:
| Q |
8 |
aaaacatattgcaaatttagaacaattgtatatatttgtacttcaattaaaatacttaccattctagaaat |
78 |
Q |
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|||| |||||| |||| |||||||| | |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26316355 |
aaaatatattgtaaatctagaacaactttatatatttgtacttcaattaaaatacttaccattctataaat |
26316425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 28575317 - 28575372
Alignment:
| Q |
23 |
tttagaacaattgtatatatttgtacttcaattaaaatacttaccattctagaaat |
78 |
Q |
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| T |
28575317 |
tttagaataactgtatatatttgtacttcagttaaaatacttaccattctagaaat |
28575372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 28568478 - 28568536
Alignment:
| Q |
20 |
aaatttagaacaattgtatatatttgtacttcaattaaaatacttaccattctagaaat |
78 |
Q |
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| T |
28568478 |
aaatttagaatagctgtatatattcgtacttcaattaaaatacttaccattctagaaat |
28568536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 41; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 3136 - 3092
Alignment:
| Q |
34 |
tgtatatatttgtacttcaattaaaatacttaccattctagaaat |
78 |
Q |
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| T |
3136 |
tgtatatatttgtacttcaattaaaatacttaccattctggaaat |
3092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 41; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 3136 - 3092
Alignment:
| Q |
34 |
tgtatatatttgtacttcaattaaaatacttaccattctagaaat |
78 |
Q |
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| T |
3136 |
tgtatatatttgtacttcaattaaaatacttaccattctggaaat |
3092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0889 (Bit Score: 37; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0889
Description:
Target: scaffold0889; HSP #1
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 4410 - 4358
Alignment:
| Q |
20 |
aaatttagaacaattgtatatatttgtacttcaattaaaatacttaccattct |
72 |
Q |
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|||||||||| || |||||||||| ||| |||||||||||||||||||||||| |
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| T |
4410 |
aaatttagaataactgtatatattggtatttcaattaaaatacttaccattct |
4358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 37; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 4614 - 4562
Alignment:
| Q |
20 |
aaatttagaacaattgtatatatttgtacttcaattaaaatacttaccattct |
72 |
Q |
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|||||||||| || |||||||||| ||| |||||||||||||||||||||||| |
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| T |
4614 |
aaatttagaataactgtatatattggtatttcaattaaaatacttaccattct |
4562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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