View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0299Eco13 (Length: 476)
Name: NF0299Eco13
Description: NF0299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0299Eco13 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 9 - 465
Target Start/End: Complemental strand, 2102925 - 2102470
Alignment:
| Q |
9 |
gggcttggttctgattatcttgctgaaatttattatgagcactnnnnnnncatctttgatttcataacgatggaagttgtaatttcngtncataacttct |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
2102925 |
gggcttggttctgattatcttgctgaaatttattatgagcactaaaaaaacatctttgatttcataacgatggaagttgtaatttcagttcataacttct |
2102826 |
T |
|
| Q |
109 |
tttatatttggccttgcatatgcaggtattgcttcttgatacctaaaagctatcctttagctncggcaggtcctttgctttgtgctggaatcactgttta |
208 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2102825 |
tttatatttggtcttgcatatgcaggtattgcttcttgatacctaaaagctatcctttagcttcggcaggtcctttgctttgtgctggaatcactgttta |
2102726 |
T |
|
| Q |
209 |
ttctcccatgatgcgacataatatgaatcaacctggtaagtctcttggagtggttggncttggnggccncggtcatatggcagtaaaatttgggaagnca |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||| || |
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| T |
2102725 |
ttctcccatgatgcgacataatatgaatcaacctggtaagtctcttggagtggttggtcttggtggcctcggtcatatggcagtaaaatttgggaaggca |
2102626 |
T |
|
| Q |
309 |
tttggtttgcgtgtaacggttttcagcactagtatgtcaaagaaagaggaggcgctgagcttttcttggngcagaccaatttggtgnttcntctaatcna |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| || ||| ||||||| | |
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| T |
2102625 |
tttggtttgcgtgtaacggttttcagcactagtatgtcaaagaaagaggaggcgctgagc-tttcttggtgcagaccaatttgttgtttcatctaatcaa |
2102527 |
T |
|
| Q |
409 |
gaagaggngagggtaagtattacatgaaccatctataccanagcattttcttcaaac |
465 |
Q |
| |
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|||||| ||||| ||||||||||||||||||||||| || |||||||||||||||| |
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|
| T |
2102526 |
gaagagatgagggcaagtattacatgaaccatctatatcatagcattttcttcaaac |
2102470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 63 - 465
Target Start/End: Complemental strand, 2096659 - 2096258
Alignment:
| Q |
63 |
tttgatttcataacgatggaagttgtaatttcngtncataacttcttttatatttggccttgcatatgcaggtattgcttcttgatacctaaaagctatc |
162 |
Q |
| |
|
||||||||| ||| ||||| ||||||||||| || ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
2096659 |
tttgatttcgtaataatggaggttgtaatttcagttcataacttcttttatatatggtcttgcatgtgcaggtattgcttcttgatacctaaaagctatc |
2096560 |
T |
|
| Q |
163 |
ctttagctncggcaggtcctttgctttgtgctggaatcactgtttattctcccatgatgcgacataatatgaatcaacctggtaagtctcttggagtggt |
262 |
Q |
| |
|
|| ||||| | |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| |
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|
| T |
2096559 |
ctctagcttcagcaggtcctttgctctgtgctggaatcactgtttattctcccatgattcgacataatatgaatcaacccggcaagtctcttggagtggt |
2096460 |
T |
|
| Q |
263 |
tggncttggnggccncggtcatatggcagtaaaatttgggaagncatttggtttgcgtgtaacggttttcagcactagtatgtcaaagaaagaggaggcg |
362 |
Q |
| |
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||| ||||| |||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
2096459 |
tggtcttggtggcctcggtcatatggcggtaaaatttgggaaggcatttggtttgcgtgtaacggttttcagcactagcatgtcaaagaaagaggaggcg |
2096360 |
T |
|
| Q |
363 |
ctgagcttttcttggngcagaccaatttggtgnttcntctaatcnagaagaggngagggtaagtattacatgaaccatctataccanagcattttcttca |
462 |
Q |
| |
|
|||||| ||||||| ||||||||||||| || ||| ||||||| |||||| ||||||| |||||| ||||||||||||||||| ||||||||||||| |
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| T |
2096359 |
ctgagc-cttcttggtgcagaccaatttgttgtttcatctaatcaagaagatatgagggtatgtattatatgaaccatctataccatagcattttcttca |
2096261 |
T |
|
| Q |
463 |
aac |
465 |
Q |
| |
|
||| |
|
|
| T |
2096260 |
aac |
2096258 |
T |
|
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