View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0299Eco14 (Length: 361)
Name: NF0299Eco14
Description: NF0299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0299Eco14 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 361
Target Start/End: Complemental strand, 30672346 - 30671993
Alignment:
| Q |
8 |
gatgtgttgggagcagatgcaagaaagagagtgaataatgtaatttaatttaattgcatacctnaaannnnnnnnnnnnnnnnc-gtttgctttgaaatc |
106 |
Q |
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| T |
30672346 |
gatgtgttgggagcagatgcaagaaagagagtgaataatgtaatttaatttaattgcataccttaaattttttttatctttttttgtttgctttgaaatc |
30672247 |
T |
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| Q |
107 |
tatctactgacaaaattactctttctttgacagcttgtattttatgtgtttaanccatcactggttggtagcaatttggctgaaacgttaacatctgata |
206 |
Q |
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| T |
30672246 |
tatctactgacaaaattactctttctttgacagcttgtattttatgtgtttaatccatcactggttggaagcaatttggctgaaacgttaacatctgata |
30672147 |
T |
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| Q |
207 |
atgttcttactttgtgagtaaactatctaagtaactgttgttatggattgatgattggtttcttagtcttaattcacagtttttgatacatttaggnggn |
306 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
30672146 |
atgttcttactttgtgagt-aactatctaagtaactgttgttatgaattgatgattggtttcttagtcttaattcacagcttttgatacatttaggtggt |
30672048 |
T |
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| Q |
307 |
tcatgccagtcaatgntcntgctacnttcatatngggntcagctttagcggggat |
361 |
Q |
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| T |
30672047 |
tcatgccagtcaatgttcttgctacattcatattgggttcagctttagcgtggat |
30671993 |
T |
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