View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0299Eco2 (Length: 724)
Name: NF0299Eco2
Description: NF0299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0299Eco2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 4 - 711
Target Start/End: Original strand, 24694987 - 24695696
Alignment:
| Q |
4 |
aacacgatcatcttttaaaggttcagagacaaacggacaaagattttgaaataaaaccaagatagtgcacaatgaacaaatcctcaaaagcttgttgcat |
103 |
Q |
| |
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||||| |||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24694987 |
aacacaatcatcttttaaaggttcggagacaaacggataaagattttgaaatacaaccaagatagtgcacaatgaacaaatcctcaaaagcttgttgcat |
24695086 |
T |
|
| Q |
104 |
ttaaattacacctagccnnnnnnnnnnnnnnntgccctccacctcaattttgaaaccacccaaatattgaccacaaatcttggctagataatatccacac |
203 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
24695087 |
ttaaattacacctagccaaaaaagacaaaaaatgccctccacctcaattttgaaaccaccca-----------caaatcttagctagataatatccacac |
24695175 |
T |
|
| Q |
204 |
aatcccaaagcaaataataccatagcacaataccacccaaattgttgcaaacctaacacactgctatgataagacacaaccgagacaaataaaatctgag |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24695176 |
aatcccaaagcaaataataccatagcacaataccatccaaattgttgcaaacctaacacactgctatgataagacacaaccgagacaaataaaatctgag |
24695275 |
T |
|
| Q |
304 |
ctgaattagatggtatgaattaagtcacttgtgcactttaaaatcaccagaacaatctgaattttcaanccgtaatatcgtcgaggaaagcccgcggatt |
403 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||| |
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|
| T |
24695276 |
ctgaattagatggtatgaattaagtcacctgtgcactttaaaatcaccagaacaatctgaattttcaaaccgtaatatcgtcaaggaaaacccgcggatt |
24695375 |
T |
|
| Q |
404 |
caaacaccattgtacaatgttgtaattattgatctttaatttaatacgcaaccagttccaagaataaactttcatctcctcgtgca-nnnnnnnnngtgc |
502 |
Q |
| |
|
||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24695376 |
caaacaccactgcacaatgttgtaattattgatatttaatttaatacgcaaccagttccaagaataaactttcatctcctcgtgcattttttttttgtgc |
24695475 |
T |
|
| Q |
503 |
ctttatttgttgngaaata-------gtttcttgtctttcaaatgttccncacacatgtgaaccaaactacattgacccgctttgagaatgctcttcttc |
595 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24695476 |
ctttatttgttgggaaatagtttcttgtttcttgtctttcaaatgttccacacacatgtgaaccaaactacattgacacgctttgagaatgctcttcttc |
24695575 |
T |
|
| Q |
596 |
tacctagtanaccttccttccttttg-aaagccgaagagatccccaatcncgaacatatntngtaccntaaccct--anaaagcataccct-aaaaaata |
691 |
Q |
| |
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||||||||| |||||||||||||||| ||||||||||||||||| |||| ||||||||| | ||||| ||| ||| | ||| |||| || |||||||| |
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| T |
24695576 |
tacctagtagaccttccttccttttgaaaagccgaagagatcccaaatcacgaacatatattgtaccataaacctagaaaaacaatacactaaaaaaata |
24695675 |
T |
|
| Q |
692 |
gacgac-taccgattcttcaa |
711 |
Q |
| |
|
|||||| |||||||||||||| |
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|
| T |
24695676 |
gacgacataccgattcttcaa |
24695696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 219 - 674
Target Start/End: Original strand, 24707724 - 24708189
Alignment:
| Q |
219 |
aataccatagcacaataccacccaaattgttgcaaacctaacacactgctatgataa-gacacaaccgagacaaataaaatctgagctgaattagatggt |
317 |
Q |
| |
|
||||||| |||||| ||||||||||| || ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| ||| |
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|
| T |
24707724 |
aataccagagcacagtaccacccaaactgctgcaaacctaacacactgctacgataaagacacaaccgagacaaataaaatctgagttgaattagagggt |
24707823 |
T |
|
| Q |
318 |
atgaattaagtcacttgtgcactttaaaatcaccagaacaatctgaattttcaanccgtaatatcgtcgaggaaagcccgcggattcaaacaccattgta |
417 |
Q |
| |
|
||||||||||||| || ||||||| |||||||||||||| |||| ||||||||| ||||||| ||| ||| |||| |||| |||||||| | || | |
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| T |
24707824 |
atgaattaagtcaattatgcacttcaaaatcaccagaaccatctaaattttcaaaatgtaatattgtcaaggcaagcaaacggactcaaacacgactgca |
24707923 |
T |
|
| Q |
418 |
caatgttgtaattattgatctttaatttaatacgcaaccagttccaagaataaactttcatctcctcgtgca-nnnnnnnnngtgcctttatttgttgng |
516 |
Q |
| |
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|||| ||||||| | || ||| ||||||| | ||||||||||||||||||||||||||||||||| ||| ||| |||| ||| ||| | |
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|
| T |
24707924 |
caatattgtaatcgtgaatatttgatttaatccacaaccagttccaagaataaactttcatctcctcaagcattttttctatgtgactttttttattgtg |
24708023 |
T |
|
| Q |
517 |
aaatagtttctt-------gtctttcaaatgttccncacacatgtgaaccaaactacattgacccgctttgagaatgctcttcttctacctagtanacct |
609 |
Q |
| |
|
|||||||||||| ||||| |||||| ||| |||||| | ||||||||||||| |||| ||||||||||||||||||| |||||||||| |||| |
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| T |
24708024 |
aaatagtttcttgtttctagtcttccaaatgctccacacacaggagaaccaaactacactgacacgctttgagaatgctcttccgctacctagtagacct |
24708123 |
T |
|
| Q |
610 |
tccttccttttg-aaagccgaagagatccccaatcncgaacatatntngtaccntaaccctanaaa |
674 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||| ||||||||| | ||||| ||| |||| ||| |
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|
| T |
24708124 |
tccttccttttgaaaagccgaagagatcccaaatcacgaacatatatagtaccataaacctagaaa |
24708189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 24707522 - 24707571
Alignment:
| Q |
71 |
cacaatgaacaaatcctcaaaagcttgttgcatttaaattacacctagcc |
120 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||| ||||| |
|
|
| T |
24707522 |
cacaatgaacaaatcctcaaaaacttgttgcatttgaattacacatagcc |
24707571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 13326066 - 13326127
Alignment:
| Q |
137 |
gccctccacctcaattttgaaaccacccaaatattgaccacaaatcttggctagataatatc |
198 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||| |||||||||||| |||| |||||||| |
|
|
| T |
13326066 |
gccctccacctcaatttagaaaccaccaaaatatcgaccacaaatctgagctacataatatc |
13326127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 13338402 - 13338463
Alignment:
| Q |
137 |
gccctccacctcaattttgaaaccacccaaatattgaccacaaatcttggctagataatatc |
198 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||| |||||||||||| |||| |||||||| |
|
|
| T |
13338402 |
gccctccacctcaatttagaaaccaccaaaatatcgaccacaaatctgagctacataatatc |
13338463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 32636373 - 32636327
Alignment:
| Q |
137 |
gccctccacctcaattttgaaaccacccaaatattgaccacaaatct |
183 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
32636373 |
gccctccatctcaattttgaaaccaccaaaatatcgaccacaaatct |
32636327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 5667939 - 5668000
Alignment:
| Q |
137 |
gccctccacctcaattttgaaaccacccaaatattgaccacaaatcttggctagataatatc |
198 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||| |||||||||||| |||| |||||||| |
|
|
| T |
5667939 |
gccctccacctcaatttagaaaccaccaaaatatcgaccacaaatctgagctacataatatc |
5668000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 51285975 - 51285929
Alignment:
| Q |
137 |
gccctccacctcaattttgaaaccacccaaatattgaccacaaatct |
183 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||| |||||||| |
|
|
| T |
51285975 |
gccctccacctcaattttgaaaccaccaaaatatagacaacaaatct |
51285929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 48491961 - 48492007
Alignment:
| Q |
137 |
gccctccacctcaattttgaaaccacccaaatattgaccacaaatct |
183 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||||| |||||||||||| |
|
|
| T |
48491961 |
gccctccatctcaattttgaaacaaccaaaatatcgaccacaaatct |
48492007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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