View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0299Eco28 (Length: 271)
Name: NF0299Eco28
Description: NF0299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0299Eco28 |
 | |
|
| [»] chr7 (6 HSPs) |
| |
|
| [»] chr5 (7 HSPs) |
| |
|
| [»] chr1 (3 HSPs) |
| |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 5284493 - 5284754
Alignment:
| Q |
10 |
tgatgtaccancaagggtgttttgcaggaggtacggtacttcgtttggccaangatttagctganaacaacaaaggtgctcgtgtgtngntngtttgttc |
109 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| | | |||||||| |
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|
| T |
5284493 |
tgatgtaccaacaagggtgttttgcaggtggtacggtacttcgtttggccaaagatttagctgagaacaacaaaggtgctcgtgtgttggttgtttgttc |
5284592 |
T |
|
| Q |
110 |
tgaagtcactgctgtcacatttcgtggccctagcganactcannta-acaggtcttgttggacaagcactatttggagatgganctgctgctcttattgt |
208 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||| || ||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5284593 |
tgaagtcaccgctgtcacatttcgtggccctagcgatactcacttagaca-gtcttgttggacaagcactatttggagatggagctgctgctcttattgt |
5284691 |
T |
|
| Q |
209 |
tgnctctgacccaataccagaaatagagaaacctatatttgagatggtttggactgcacaaac |
271 |
Q |
| |
|
|| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5284692 |
tggctctgacccaataccagaaattgagagacctatatttgagatggtttggactgcacaaac |
5284754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 5302681 - 5302942
Alignment:
| Q |
10 |
tgatgtaccancaagggtgttttgcaggaggtacggtacttcgtttggccaangatttagctganaacaacaaaggtgctcgtgtgtngntngtttgttc |
109 |
Q |
| |
|
|||||||||| ||||||||||||||||| || ||||| |||||||||||||| ||| ||||||| |||||||||||||||||||||| | | || ||||| |
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|
| T |
5302681 |
tgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatctagctgagaacaacaaaggtgctcgtgtgttggttgtatgttc |
5302780 |
T |
|
| Q |
110 |
tgaagtcactgctgtcacatttcgtggccctagcganactcannta-acaggtcttgttggacaagcactatttggagatgganctgctgctcttattgt |
208 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||| || ||||| | |||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5302781 |
agaggtcaccgctgtcacatttcgtggccctagtgatactcacttggacag-tcttgttggacaagcactatttggagatggagctgctgctcttattgt |
5302879 |
T |
|
| Q |
209 |
tgnctctgacccaataccagaaatagagaaacctatatttgagatggtttggactgcacaaac |
271 |
Q |
| |
|
|| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5302880 |
tggctctgaccccgtaccagaaattgagaaacctatatttgagatggtttggactgcacaaac |
5302942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 5315296 - 5315557
Alignment:
| Q |
10 |
tgatgtaccancaagggtgttttgcaggaggtacggtacttcgtttggccaangatttagctganaacaacaaaggtgctcgtgtgtngntngtttgttc |
109 |
Q |
| |
|
|||||||||| |||||||| |||||||| || ||||| || |||||||| || ||||| ||||| |||||||||||||||||||||| | | |||||||| |
|
|
| T |
5315296 |
tgatgtaccaacaagggtgctttgcaggtggcacggtgctccgtttggctaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgtttgttc |
5315395 |
T |
|
| Q |
110 |
tgaagtcactgctgtcacatttcgtggccctagcganactcannta-acaggtcttgttggacaagcactatttggagatgganctgctgctcttattgt |
208 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| || ||||| || |||| |||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
5315396 |
tgaagtcaccgctgtcacatttcgtggtcctagtgatactcacttagacagc-cttgttggacaagcactatttggagatggagcggctgctcttattgt |
5315494 |
T |
|
| Q |
209 |
tgnctctgacccaataccagaaatagagaaacctatatttgagatggtttggactgcacaaac |
271 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5315495 |
tggctctgacccagtaccagaaatagagaaacctatatttgagatggtttggactgcacaaac |
5315557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 5289634 - 5289373
Alignment:
| Q |
10 |
tgatgtaccancaagggtgttttgcaggaggtacggtacttcgtttggccaangatttagctganaacaacaaaggtgctcgtgtgtngntngtttgttc |
109 |
Q |
| |
|
|||||||||| ||||||||||||||||| || ||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||| | | |||||||| |
|
|
| T |
5289634 |
tgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgtttgttc |
5289535 |
T |
|
| Q |
110 |
tgaagtcactgctgtcacatttcgtggccctagcganactcannt-aacaggtcttgttggacaagcactatttggagatgganctgctgctcttattgt |
208 |
Q |
| |
|
||||||||| ||||||||||| |||||||| || || ||||| | ||| | |||||||| |||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
5289534 |
tgaagtcaccgctgtcacattccgtggccccagtgatactcacttggaca-gccttgttgggcaagcactgtttggagatggagctgctgctcttattgt |
5289436 |
T |
|
| Q |
209 |
tgnctctgacccaataccagaaatagagaaacctatatttgagatggtttggactgcacaaac |
271 |
Q |
| |
|
|| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5289435 |
tggttctgacccagtaccagaaattgagaaacctatatttgagatggtttggactgcacaaac |
5289373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 5310582 - 5310843
Alignment:
| Q |
10 |
tgatgtaccancaagggtgttttgcaggaggtacggtacttcgtttggccaangatttagctganaacaacaaaggtgctcgtgtgtngntngtttgttc |
109 |
Q |
| |
|
|||||||||| ||||||||||||||||| || ||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||| | | |||||||| |
|
|
| T |
5310582 |
tgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctgagaacaacaaaggtgctcgtgtgttggttgtttgttc |
5310681 |
T |
|
| Q |
110 |
tgaagtcactgctgtcacatttcgtggccctagcganactcannt-aacaggtcttgttggacaagcactatttggagatgganctgctgctcttattgt |
208 |
Q |
| |
|
||||||||| |||||||||||||||||||| || || ||||| | ||| | |||||||| |||||| | |||||||||||| |||||||||||||||| |
|
|
| T |
5310682 |
tgaagtcaccgctgtcacatttcgtggccccagtgatactcacttggaca-gccttgttgggcaagcattgtttggagatggagctgctgctcttattgt |
5310780 |
T |
|
| Q |
209 |
tgnctctgacccaataccagaaatagagaaacctatatttgagatggtttggactgcacaaac |
271 |
Q |
| |
|
|| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5310781 |
tggttctgacccagtaccagaaattgagaaacctatatttgagatggtttggactgcacaaac |
5310843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 46706925 - 46706664
Alignment:
| Q |
10 |
tgatgtaccancaagggtgttttgcaggaggtacggtacttcgtttggccaangatttagctganaacaacaaaggtgctcgtgtgtngntngtttgttc |
109 |
Q |
| |
|
|||||||||| ||||| || ||||||||||| |||| ||||||||||| || ||||| ||||| |||||||||||||| ||||| | | | |||||||| |
|
|
| T |
46706925 |
tgatgtaccaacaaggttgctttgcaggaggcacggggcttcgtttggctaacgatttggctgagaacaacaaaggtgcccgtgtattggttgtttgttc |
46706826 |
T |
|
| Q |
110 |
tgaagtcactgctgtcacatttcgtggccctagcganactcannt-aacaggtcttgttggacaagcactatttggagatgganctgctgctcttattgt |
208 |
Q |
| |
|
|||||||||||| |||||||| || |||||||| || ||||| | ||| | |||||||| |||||||| ||||||| || ||||||| |||||||| |
|
|
| T |
46706825 |
tgaagtcactgcagtcacattccgcggccctagtgatactcacttggaca-gccttgttgggcaagcactgtttggagtcagagctgctgcacttattgt |
46706727 |
T |
|
| Q |
209 |
tgnctctgacccaataccagaaatagagaaacctatatttgagatggtttggactgcacaaac |
271 |
Q |
| |
|
|| ||||| ||| |||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
46706726 |
tggttctgatccagtaccagaaattgagaaacctatatttgagatggtttggacttcacaaac |
46706664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 1478184 - 1478445
Alignment:
| Q |
10 |
tgatgtaccancaagggtgttttgcaggaggtacggtacttcgtttggccaangatttagctganaacaacaaaggtgctcgtgtgtngntngtttgttc |
109 |
Q |
| |
|
|||||||||| ||||| ||||||||||| || ||||| |||||||||||||| || || ||||| ||||| |||||||||||||||| | | |||||||| |
|
|
| T |
1478184 |
tgatgtaccaacaaggatgttttgcaggtgggacggtgcttcgtttggccaaggacttggctgagaacaataaaggtgctcgtgtgttggttgtttgttc |
1478283 |
T |
|
| Q |
110 |
tgaagtcactgctgtcacatttcgtggccctagcganactcannta-acaggtcttgttggacaagcactatttggagatgganctgctgctcttattgt |
208 |
Q |
| |
|
|||||| ||||| || ||||| ||||| ||||| || ||||| | |||| |||||||||||||||||||||||||||||| ||||||| || ||||| |
|
|
| T |
1478284 |
tgaagttactgcagtgacattccgtggtcctagtgatactcatttggacag-tcttgttggacaagcactatttggagatggtgctgctgcactcattgt |
1478382 |
T |
|
| Q |
209 |
tgnctctgacccaataccagaaatagagaaacctatatttgagatggtttggactgcacaaac |
271 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1478383 |
tggttctgacccaataccagaaattgagaaacctatatttgagatggtttggactgcacaaac |
1478445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 1482378 - 1482639
Alignment:
| Q |
10 |
tgatgtaccancaagggtgttttgcaggaggtacggtacttcgtttggccaangatttagctganaacaacaaaggtgctcgtgtgtngntngtttgttc |
109 |
Q |
| |
|
|||||||||| ||||| || |||||||| || ||||| |||||||||||||| || || ||||| || || |||||||||||||||| | | |||||||| |
|
|
| T |
1482378 |
tgatgtaccaacaaggatgctttgcaggtgggacggtgcttcgtttggccaaggacttggctgagaataataaaggtgctcgtgtgttggttgtttgttc |
1482477 |
T |
|
| Q |
110 |
tgaagtcactgctgtcacatttcgtggccctagcganactcannta-acaggtcttgttggacaagcactatttggagatgganctgctgctcttattgt |
208 |
Q |
| |
|
|||||| ||||| || ||||| ||||| ||||| || ||||| | |||| |||||||||||||||||| |||||||||||| ||||||| || ||||| |
|
|
| T |
1482478 |
tgaagttactgcagtgacattccgtggtcctagtgatactcatttggacag-tcttgttggacaagcactctttggagatggagctgctgcactcattgt |
1482576 |
T |
|
| Q |
209 |
tgnctctgacccaataccagaaatagagaaacctatatttgagatggtttggactgcacaaac |
271 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1482577 |
tggttctgacccaataccagaaattgagaaacctatatttgagatggtttggactgcacaaac |
1482639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 1492353 - 1492614
Alignment:
| Q |
10 |
tgatgtaccancaagggtgttttgcaggaggtacggtacttcgtttggccaangatttagctganaacaacaaaggtgctcgtgtgtngntngtttgttc |
109 |
Q |
| |
|
|||||||||| ||||| ||||||||||| || ||||||||||||||||| || ||||| ||||| |||||||||||||||||||||| | |||||||| |
|
|
| T |
1492353 |
tgatgtaccagcaaggttgttttgcaggtggcacggtacttcgtttggctaaggatttggctgagaacaacaaaggtgctcgtgtgttagttgtttgttc |
1492452 |
T |
|
| Q |
110 |
tgaagtcactgctgtcacatttcgtggccctagcganactcannt-aacaggtcttgttggacaagcactatttggagatgganctgctgctcttattgt |
208 |
Q |
| |
|
|||||||||||| |||||||||||||| || || || || || | ||| |||||||||||||||||||||||||||||||| | ||||| |||||||| |
|
|
| T |
1492453 |
tgaagtcactgcagtcacatttcgtggtcccagtgatacacacttggaca-gtcttgttggacaagcactatttggagatggagcagctgcacttattgt |
1492551 |
T |
|
| Q |
209 |
tgnctctgacccaataccagaaatagagaaacctatatttgagatggtttggactgcacaaac |
271 |
Q |
| |
|
|| ||||| || |||||||||| || |||||||||||||||||| ||||||| |||||||| |
|
|
| T |
1492552 |
tgggtctgatccggtaccagaaattgaaaaacctatatttgagatgatttggacagcacaaac |
1492614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 1505162 - 1505423
Alignment:
| Q |
10 |
tgatgtaccancaagggtgttttgcaggaggtacggtacttcgtttggccaangatttagctganaacaacaaaggtgctcgtgtgtngntngtttgttc |
109 |
Q |
| |
|
|||||||||| ||||| ||||||||||| || ||||| |||||||||||||| || || ||||| |||||||||||||| ||||||| | | || ||||| |
|
|
| T |
1505162 |
tgatgtaccagcaaggatgttttgcaggtgggacggtgcttcgtttggccaaggacttggctgagaacaacaaaggtgcccgtgtgttggttgtctgttc |
1505261 |
T |
|
| Q |
110 |
tgaagtcactgctgtcacatttcgtggccctagcganactcannt-aacaggtcttgttggacaagcactatttggagatgganctgctgctcttattgt |
208 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| || ||||| | ||| | |||||||||||||| ||||||||||||||| ||||||| || ||||| |
|
|
| T |
1505262 |
cgaagtcactgcagtcacatttcgcggccctagtgatactcacttggaca-gccttgttggacaagctctatttggagatggagctgctgcactaattgt |
1505360 |
T |
|
| Q |
209 |
tgnctctgacccaataccagaaatagagaaacctatatttgagatggtttggactgcacaaac |
271 |
Q |
| |
|
|| || || |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1505361 |
tggttcagatccaataccagaaattgagaaacctatatttgaaatggtttggactgcacaaac |
1505423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 1509309 - 1509570
Alignment:
| Q |
10 |
tgatgtaccancaagggtgttttgcaggaggtacggtacttcgtttggccaangatttagctganaacaacaaaggtgctcgtgtgtngntngtttgttc |
109 |
Q |
| |
|
|||||||||| ||| ||||||||||||| || || || |||| |||||| || ||||| ||||| || ||| ||| ||||||||||| | | |||||||| |
|
|
| T |
1509309 |
tgatgtaccaacaaaggtgttttgcaggtggcactgtgcttcatttggcaaaggatttggctgaaaataaccaagatgctcgtgtgttggttgtttgttc |
1509408 |
T |
|
| Q |
110 |
tgaagtcactgctgtcacatttcgtggccctagcganactcannta-acaggtcttgttggacaagcactatttggagatgganctgctgctcttattgt |
208 |
Q |
| |
|
| |||||| ||| ||||||||| |||||||| | || ||||| | |||| |||||||||||||||| |||||||||||||| ||||||| || ||||| |
|
|
| T |
1509409 |
taaagtcattgcagtcacattttgtggccctggtgatactcatttggacag-tcttgttggacaagcattatttggagatggagctgctgcactcattgt |
1509507 |
T |
|
| Q |
209 |
tgnctctgacccaataccagaaatagagaaacctatatttgagatggtttggactgcacaaac |
271 |
Q |
| |
|
|| ||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1509508 |
tggtactgaccctgtaccagaaattgagaaatctatatttgagatggtttggactgcacaaac |
1509570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 1499425 - 1499686
Alignment:
| Q |
10 |
tgatgtaccancaagggtgttttgcaggaggtacggtacttcgtttggccaangatttagctganaacaacaaaggtgctcgtgtgtngntngtttgttc |
109 |
Q |
| |
|
|||||||||| | |||||||| |||||| || || |||||||||||||| || || |||||||| || ||||||||||||||||||| | | |||||||| |
|
|
| T |
1499425 |
tgatgtaccaactagggtgttatgcaggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaaggtgctcgtgtgttggttgtttgttc |
1499524 |
T |
|
| Q |
110 |
tgaagtcactgctgtcacatttcgtggccctagcganactcannta-acaggtcttgttggacaagcactatttggagatgganctgctgctcttattgt |
208 |
Q |
| |
|
|||| ||||||| || ||||| |||| ||||| | ||||| || ||| ||||||||||||||| |||||||||||||| |||| || | ||||| |
|
|
| T |
1499525 |
tgaaatcactgcaatctcattttgtggacctagtaatactcacctacaca-aacttgttggacaagcaatatttggagatggagctgcggcagtcattgt |
1499623 |
T |
|
| Q |
209 |
tgnctctgacccaataccagaaatagagaaacctatatttgagatggtttggactgcacaaac |
271 |
Q |
| |
|
|| |||||||| | |||| ||||| ||||||||| |||||||| | ||||||||||||||||| |
|
|
| T |
1499624 |
tggctctgacctagtacctgaaattgagaaacctttatttgagttagtttggactgcacaaac |
1499686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 271
Target Start/End: Original strand, 1487007 - 1487116
Alignment:
| Q |
162 |
cttgttggacaagcactatttggagatgganctgctgctcttattgttgnctctgacccaataccagaaatagagaaacctatatttgagatggtttgga |
261 |
Q |
| |
|
||||||||||||||| ||||||| |||||| ||| || | ||||||| ||| || || ||| || |||| ||||||||| | |||||| | ||||||| |
|
|
| T |
1487007 |
cttgttggacaagcattatttggtgatggagctgttgtagtcattgttggctccgatccgatatcaaaaattgagaaacctctctttgagcttgtttgga |
1487106 |
T |
|
| Q |
262 |
ctgcacaaac |
271 |
Q |
| |
|
|||||||||| |
|
|
| T |
1487107 |
ctgcacaaac |
1487116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 44141386 - 44141647
Alignment:
| Q |
10 |
tgatgtaccancaagggtgttttgcaggaggtacggtacttcgtttggccaangatttagctganaacaacaaaggtgctcgtgtgtngntngtttgttc |
109 |
Q |
| |
|
|||||||||| ||||| || ||||||||||| ||||| ||||||||||| || ||||||||||| |||||||||||||||||||||| | | || ||||| |
|
|
| T |
44141386 |
tgatgtaccaacaaggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtctgttc |
44141485 |
T |
|
| Q |
110 |
tgaagtcactgctgtcacatttcgtggccctagcganactcannt-aacaggtcttgttggacaagcactatttggagatgganctgctgctcttattgt |
208 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| || ||||| | ||| | |||||||||||||||||||||||||||||| ||||||| || ||||| |
|
|
| T |
44141486 |
tgaagtcactgcagtcacatttcgcggccctagtgatactcacttggaca-gccttgttggacaagcactatttggagatggagctgctgcactaattgt |
44141584 |
T |
|
| Q |
209 |
tgnctctgacccaataccagaaatagagaaacctatatttgagatggtttggactgcacaaac |
271 |
Q |
| |
|
|| || || ||| |||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44141585 |
tggttcagatccagtaccagaaattgagaaaccaatatttgagatggtttggactgcacaaac |
44141647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 44128759 - 44129020
Alignment:
| Q |
10 |
tgatgtaccancaagggtgttttgcaggaggtacggtacttcgtttggccaangatttagctganaacaacaaaggtgctcgtgtgtngntngtttgttc |
109 |
Q |
| |
|
|||||||||| ||||| || ||||||||||| ||||| ||||||||||| || ||||||||||| |||||||||||||||||||||| | | || ||||| |
|
|
| T |
44128759 |
tgatgtaccaacaaggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtctgttc |
44128858 |
T |
|
| Q |
110 |
tgaagtcactgctgtcacatttcgtggccctagcganactcannt-aacaggtcttgttggacaagcactatttggagatgganctgctgctcttattgt |
208 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| || ||||| | ||| | ||||||||||| || ||||||||||||||| ||||||| || ||||| |
|
|
| T |
44128859 |
tgaagtcactgcagtcacatttcgcggccctagtgatactcacttggaca-gccttgttggacaggccctatttggagatggagctgctgcactaattgt |
44128957 |
T |
|
| Q |
209 |
tgnctctgacccaataccagaaatagagaaacctatatttgagatggtttggactgcacaaac |
271 |
Q |
| |
|
|| || || ||| |||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44128958 |
tggttcagatccagtaccagaaattgagaaaccaatatttgagatggtttggactgcacaaac |
44129020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 44132964 - 44133225
Alignment:
| Q |
10 |
tgatgtaccancaagggtgttttgcaggaggtacggtacttcgtttggccaangatttagctganaacaacaaaggtgctcgtgtgtngntngtttgttc |
109 |
Q |
| |
|
|||||||||| ||||| || ||||||||||| ||||| ||||||||||| || ||||||||||| |||||||||||||||||||||| | | || ||||| |
|
|
| T |
44132964 |
tgatgtaccaacaaggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaaggtgctcgtgtgttggttgtctgttc |
44133063 |
T |
|
| Q |
110 |
tgaagtcactgctgtcacatttcgtggccctagcganactcannt-aacaggtcttgttggacaagcactatttggagatgganctgctgctcttattgt |
208 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| || ||||| | ||| | ||||||||||| || ||||||||||||||| ||||||| || ||||| |
|
|
| T |
44133064 |
tgaagtcactgcagtcacatttcgcggccctagtgatactcacttggaca-gccttgttggacaggccctatttggagatggagctgctgcactaattgt |
44133162 |
T |
|
| Q |
209 |
tgnctctgacccaataccagaaatagagaaacctatatttgagatggtttggactgcacaaac |
271 |
Q |
| |
|
|| || || ||| |||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44133163 |
tggttcagatccagtaccagaaattgagaaaccaatatttgagatggtttggactgcacaaac |
44133225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 24163727 - 24163466
Alignment:
| Q |
10 |
tgatgtaccancaagggtgttttgcaggaggtacggtacttcgtttggccaangatttagctganaacaacaaaggtgctcgtgtgtngntngtttgttc |
109 |
Q |
| |
|
|||||||||| ||||||||||||||||| || ||||||||||| |||||||| || || ||||| |||||||||||| ||||||||| | | |||||||| |
|
|
| T |
24163727 |
tgatgtaccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaaggttctcgtgtgttggttgtttgttc |
24163628 |
T |
|
| Q |
110 |
tgaagtcactgctgtcacatttcgtggccctagcganactcannta-acaggtcttgttggacaagcactatttggagatgganctgctgctcttattgt |
208 |
Q |
| |
|
|||||| || || |||||||| |||| || ||||| ||||| || ||| |||||||||||||| ||||||||||||||| ||||||| | ||||| |
|
|
| T |
24163627 |
tgaagttaccgcaatcacattttgtggaccaagcgatactcacttagaca-accttgttggacaagctctatttggagatggagctgctgcagtcattgt |
24163529 |
T |
|
| Q |
209 |
tgnctctgacccaataccagaaatagagaaacctatatttgagatggtttggactgcacaaac |
271 |
Q |
| |
|
|| |||||||||||||| ||||| ||||||||| |||||||| | |||||||| |||||||| |
|
|
| T |
24163528 |
tggctctgacccaatacaggaaattgagaaacctctatttgagttagtttggacagcacaaac |
24163466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 37859301 - 37859202
Alignment:
| Q |
10 |
tgatgtaccancaagggtgttttgcaggaggtacggtacttcgtttggccaangatttagctganaacaacaaaggtgctcgtgtgtngntngtttgttc |
109 |
Q |
| |
|
|||||||||| ||||| |||||||| || || ||||| ||||||||||| || || || ||||| |||||||||||||||||||||| | | |||||||| |
|
|
| T |
37859301 |
tgatgtaccaacaaggttgttttgctggtggcacggtgcttcgtttggctaaagacttggctgaaaacaacaaaggtgctcgtgtgttggtagtttgttc |
37859202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 151
Target Start/End: Complemental strand, 37863327 - 37863186
Alignment:
| Q |
10 |
tgatgtaccancaagggtgttttgcaggaggtacggtacttcgtttggccaangatttagctganaacaacaaaggtgctcgtgtgtngntngtttgttc |
109 |
Q |
| |
|
||||||| || ||||| |||||||| || || ||||| ||||||||||| || ||||| ||||| ||||||||||| |||||||| | | | |||||||| |
|
|
| T |
37863327 |
tgatgtatcaacaaggttgttttgctggtgggacggtgcttcgtttggctaaagatttggctgaaaacaacaaaggcgctcgtgttttggtggtttgttc |
37863228 |
T |
|
| Q |
110 |
tgaagtcactgctgtcacatttcgtggccctagcganactca |
151 |
Q |
| |
|
|| ||||||| || || || ||||| ||||| || ||||| |
|
|
| T |
37863227 |
ggagatcactgcagttactttccgtggacctagtgatactca |
37863186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 39030256 - 39030342
Alignment:
| Q |
10 |
tgatgtaccancaagggtgttttgcaggaggtacggtacttcgtttggccaangatttagctganaacaacaaaggtgctcgtgtgt |
96 |
Q |
| |
|
|||||||||| ||||| |||||||| || | | || ||||| ||||| || ||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
39030256 |
tgatgtaccaacaaggttgttttgctggtgcgatggctcttcgcttggctaaagatttggctgagaacaacaaaggtgcccgtgtgt |
39030342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 10 - 142
Target Start/End: Original strand, 35250996 - 35251128
Alignment:
| Q |
10 |
tgatgtaccancaagggtgttttgcaggaggtacggtacttcgtttggccaangatttagctganaacaacaaaggtgctcgtgtgtngntngtttgttc |
109 |
Q |
| |
|
|||||||||| ||||||||||| || || |||| ||| ||||||||||| || ||||| ||||| ||||| |||||||||||||| | |||||||| |
|
|
| T |
35250996 |
tgatgtaccaacaagggtgtttcgctggtggtatggttcttcgtttggctaaagatttggctgagaacaataaaggtgctcgtgttcttgtggtttgttc |
35251095 |
T |
|
| Q |
110 |
tgaagtcactgctgtcacatttcgtggccctag |
142 |
Q |
| |
|
|| ||||||| || || |||||||||||||| |
|
|
| T |
35251096 |
agagatcactgcagtgacttttcgtggccctag |
35251128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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