View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0299Eco4 (Length: 311)
Name: NF0299Eco4
Description: NF0299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0299Eco4 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 311
Target Start/End: Complemental strand, 35744239 - 35743937
Alignment:
| Q |
9 |
gtctcattgcgaattaagaaaanggacntcttntttcttcatcaagcaatggcacttcaaacggaaaannggangtgatgtttatgtnnnnnnnnttgat |
108 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| |
|
|
| T |
35744239 |
gtctcattgcgaattaagaaaatggacatcttatttcttcatcaagcaatggcacttcaaacggaaaaatggaagtgatgtttatgtaaaaaaaattgat |
35744140 |
T |
|
| Q |
109 |
cgagaanggaagntttttcttttgtnctncaangggtgnttaancagaggtngtgtgaggggaggccaatgtctttttaaaaaatagaggggaggngagt |
208 |
Q |
| |
|
|||||| ||||| |||||||||||| || ||| ||||| |||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
35744139 |
cgagaatggaaggtttttcttttgttcttcaaagggtgattaaacagaggtagtgtgaggggaggtcaatgtctttttaaaaaatagaggggaggtgagt |
35744040 |
T |
|
| Q |
209 |
gatatttggttagaactagaggaggttaatgtaatttttccaaataataaacataaaaatctagacttcggcgcangtngngccaaancanccccccttg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || || | |||||| || || |||||| |
|
|
| T |
35744039 |
gatatttggttagaactagaggaggttaatgtaatttttccaaataataaacataaaaagctagacttcggcacaagttgtgccaaaacatccacccttg |
35743940 |
T |
|
| Q |
309 |
aat |
311 |
Q |
| |
|
||| |
|
|
| T |
35743939 |
aat |
35743937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 45512335 - 45512271
Alignment:
| Q |
161 |
gtgtgaggggaggccaatgtctttttaaaaaatagaggggaggngagtgatatttggttagaact |
225 |
Q |
| |
|
||||||||||||| ||| ||||||| ||||||||||||||||| |||||| | |||||||||||| |
|
|
| T |
45512335 |
gtgtgaggggaggtcaaagtcttttgaaaaaatagaggggaggtgagtgacacttggttagaact |
45512271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 371 times since January 2019
Visitors: 2564