View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0299Eco6 (Length: 251)
Name: NF0299Eco6
Description: NF0299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0299Eco6 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 8e-76; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 8 - 168
Target Start/End: Original strand, 42388122 - 42388282
Alignment:
| Q |
8 |
cttgcaaactccacattactattataattgaaaggagtggcacttgtatataaaaaagcctttactaactgttgacgaacttcttctttgagatccttta |
107 |
Q |
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| T |
42388122 |
cttgcaaactccacattactattataattgaaaggagtggcacttgtatataaaaaagcctttactaactgttgatgaacttcttctttgagatccttta |
42388221 |
T |
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| Q |
108 |
ccatcatttgatacattgttttttaaacctcaacaaatcnactannttttccctttgatag |
168 |
Q |
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| T |
42388222 |
ccatcatttgatacatttttttttaaacctcaacaaatcaactaacttttccctttgatag |
42388282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 8 - 168
Target Start/End: Original strand, 42410419 - 42410579
Alignment:
| Q |
8 |
cttgcaaactccacattactattataattgaaaggagtggcacttgtatataaaaaagcctttactaactgttgacgaacttcttctttgagatccttta |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
42410419 |
cttgcaaactccacattactattataattgaaaggagtggcacttgtatataaaaaagcctttactaactgttgatgaacttcttatttgagatccttta |
42410518 |
T |
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| Q |
108 |
ccatcatttgatacattgttttttaaacctcaacaaatcnactannttttccctttgatag |
168 |
Q |
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| T |
42410519 |
ccatcatttgatacattgttttttaaacctcaacaaatcaactaacttttccctttgatag |
42410579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 42388323 - 42388394
Alignment:
| Q |
179 |
acatagaaacttgctttcgtttgagnagaatccatttccatctctcggggnttcctcatcatgnntctcattg |
251 |
Q |
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| T |
42388323 |
acataaaaacttgctttcgtttgaaaagtatccatttccatctct-tgggtttcctcagcatgtttctcattg |
42388394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 42410620 - 42410691
Alignment:
| Q |
179 |
acatagaaacttgctttcgtttgagnagaatccatttccatctctcggggnttcctcatcatgnntctcattg |
251 |
Q |
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||||| |||||||||||||||||| || |||||||||||||||| ||| ||||||| |||| |||||||| |
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| T |
42410620 |
acataaaaacttgctttcgtttgaaaagtatccatttccatctct-tgggtttcctcagcatgtttctcattg |
42410691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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