View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0300_high_7 (Length: 258)
Name: NF0300_high_7
Description: NF0300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0300_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 40432516 - 40432288
Alignment:
| Q |
1 |
atgcagctggtaaacaatgcagcaagtattttattactataagccaaagtcccacagccccaatgaatggcattccaacacacacagttgaaatatcaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40432516 |
atgcagctggtaaacaatgcagcaagtattttattacgataagccaaagtcccacagccccaatgaatggcattccaacacacacagttgaaatatcaaa |
40432417 |
T |
|
| Q |
101 |
tacatgtttgagaggatgcaacatttttgacattcatgttgcttgtggcaagttcagctctgtacgtcttatcaaccctaatattttcaaacgcctcaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40432416 |
tacatgtttgagaggatgcaacatttttgacattcatgttgcttgtggcaagttcggctctgtacgtcttatcaaccctaatattttcaaacgcctcaag |
40432317 |
T |
|
| Q |
201 |
tataatgattgtcttgttaatggtggtaa |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
40432316 |
tataatgattgtcttgttaatggtggtaa |
40432288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 221
Target Start/End: Complemental strand, 40436070 - 40435910
Alignment:
| Q |
61 |
caatgaatggcattccaacacacacagttgaaatatcaaatacatgtttgagaggatgcaacatttttgacattcatgttgcttgtggcaagttcagctc |
160 |
Q |
| |
|
|||| ||||||||| ||||| ||| |||||| ||| ||||||||||| ||||||||||||| || | | ||||||||||||||||||| || ||||| |
|
|
| T |
40436070 |
caattaatggcattacaacatacatagttgagatagcaaatacatgtgtgagaggatgcaaaatctctaacattcatgttgcttgtggtggtttaagctc |
40435971 |
T |
|
| Q |
161 |
tgtacgtcttatcaaccctaatattttcaaacgcctcaagtataatgattgtcttgttaat |
221 |
Q |
| |
|
|| || | ||||||| || | ||||||||||||||||| | ||||| |||||||||||| |
|
|
| T |
40435970 |
tgcacattttatcaaaccaacaattttcaaacgcctcaataaaaatgaatgtcttgttaat |
40435910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 14473344 - 14473292
Alignment:
| Q |
169 |
ttatcaaccctaatattttcaaacgcctcaagtataatgattgtcttgttaat |
221 |
Q |
| |
|
|||||||||| | ||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
14473344 |
ttatcaacccaacaattttcaaacgcctcaataataaggattgtcttgttaat |
14473292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 385 times since January 2019
Visitors: 2564