View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0300_low_10 (Length: 301)
Name: NF0300_low_10
Description: NF0300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0300_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 35442988 - 35443045
Alignment:
| Q |
7 |
atttaaccacttattttacataaatatatgtatttttagcattttgtaaccaaacaaa |
64 |
Q |
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| T |
35442988 |
atttaaccacttattttaaataaatatatgtatttttagcattttgtaaccaaacaaa |
35443045 |
T |
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Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 100 - 217
Target Start/End: Complemental strand, 35446355 - 35446240
Alignment:
| Q |
100 |
tgattttgagttatttaggagcgatttttgtatatttaacnnnnnnnnaaggagtatatttaatatttaattatttgtaaggcaagnnnnnnnnaaaaat |
199 |
Q |
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||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35446355 |
tgattttgagttaattaggaacgatttttgtatatttaa-atttttttaaggagtatatttaatatttaattatttgtaaggcaag-tttttttaaaaat |
35446258 |
T |
|
| Q |
200 |
aaataaaatctgattcta |
217 |
Q |
| |
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|||||||||||||||||| |
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| T |
35446257 |
aaataaaatctgattcta |
35446240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 16780358 - 16780329
Alignment:
| Q |
12 |
accacttattttacataaatatatgtattt |
41 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
16780358 |
accacttattttacataaatatatgtattt |
16780329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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