View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0300_low_11 (Length: 300)
Name: NF0300_low_11
Description: NF0300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0300_low_11 |
 | |
|
| [»] scaffold0899 (1 HSPs) |
| | |
|
| [»] scaffold1230 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 68 - 292
Target Start/End: Complemental strand, 5278467 - 5278243
Alignment:
| Q |
68 |
caggagttatcactgttgcaaatgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttcaggtggataagagcataattga |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5278467 |
caggagttatcactgttgcaaatgctttgtttaaatcagatcctcttatttccgacgaagttcttaccaaagcttttcaagtggataagagcataattga |
5278368 |
T |
|
| Q |
168 |
ttatcttcaaaaacagtcttggtatgacaacaactagtcggagaacatgatcagtcgactgtttactctaaattgatagttgtctttaggttttgaatca |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
5278367 |
ttatcttcaaaaacagtcttggtatgacaacaactagtcggagaacatgatcagtcgactgtttactctaaattgataggtgtctttaggtttcgaatca |
5278268 |
T |
|
| Q |
268 |
ccttgtgcaagcaaccctctctgct |
292 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
5278267 |
ccttgtgcaagcaaccctctctgct |
5278243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 68 - 227
Target Start/End: Complemental strand, 5286448 - 5286289
Alignment:
| Q |
68 |
caggagttatcactgttgcaaatgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttcaggtggataagagcataattga |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5286448 |
caggagttatcactgttgcaaatgctttgtttaaatcagatcctcttatttccgacgaagttcttaccaaagcttttcaagtggataagagcataattga |
5286349 |
T |
|
| Q |
168 |
ttatcttcaaaaacagtcttggtatgacaacaactagtcggagaacatgatcagtcgact |
227 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| |||| |
|
|
| T |
5286348 |
ttatcttcaaaagcagtcttggtatgacaacaactagtttgagaacatgattagttgact |
5286289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 68 - 217
Target Start/End: Original strand, 5282629 - 5282778
Alignment:
| Q |
68 |
caggagttatcactgttgcaaatgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttcaggtggataagagcataattga |
167 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
5282629 |
caggagttatcactgtagcaaatgctttgtttaaatcgaatccgcttatttccgacgaagttcttaccaaagcatttcaagtggataagagcataattga |
5282728 |
T |
|
| Q |
168 |
ttatcttcaaaaacagtcttggtatgacaacaactagtcggagaacatga |
217 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
5282729 |
ttatcttcaaaagcagtcttggtacgacaacaactagttggagaacatga |
5282778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 68 - 289
Target Start/End: Original strand, 20354021 - 20354242
Alignment:
| Q |
68 |
caggagttatcactgttgcaaatgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttcaggtggataagagcataattga |
167 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20354021 |
caggagtaatcactgttgcaaacgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttcaagtggataagagcataattga |
20354120 |
T |
|
| Q |
168 |
ttatcttcaaaaacagtcttggtatgacaacaactagtcggagaacatgatcagtcgactgtttactctaaattgatagttgtctttaggttttgaatca |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| | || | ||||||||| ||| |||| ||| ||| | | || ||||| |
|
|
| T |
20354121 |
ttatcttcaaaaacagtcttggtatgacaacaactagttggagaacatgattattccatggtttactctgaatggataattgaatttcgttcttcaatca |
20354220 |
T |
|
| Q |
268 |
ccttgtgcaagcaaccctctct |
289 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
20354221 |
ccttgtgcaatcaaccctctct |
20354242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 68 - 227
Target Start/End: Complemental strand, 20357834 - 20357675
Alignment:
| Q |
68 |
caggagttatcactgttgcaaatgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttcaggtggataagagcataattga |
167 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20357834 |
caggagttatcaccgttgcaaatgctttgtttaaatcagatcctcttatttccgacgaagttcttaccaaagcttttcaagtggataagagcataattga |
20357735 |
T |
|
| Q |
168 |
ttatcttcaaaaacagtcttggtatgacaacaactagtcggagaacatgatcagtcgact |
227 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| |||| |
|
|
| T |
20357734 |
ttatcttcaaaagcagtcttggtatgacaacaactagttagagaacatgattagttgact |
20357675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 6235420 - 6235270
Alignment:
| Q |
68 |
caggagttatcactgttgcaaatgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttcaggtggataagagcataattga |
167 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6235420 |
caggagttatcaccgttgcaaatgctttgtttaaatctaatccgcttatttccgacgaagttcttaccaaagcttttcaagtggataagagcataattga |
6235321 |
T |
|
| Q |
168 |
ttatcttcaaaaacagtcttggtatgacaacaactagtcggagaacatgat |
218 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
6235320 |
ttatcttcaaaagcagtcttggtatgacaacaactagttgaagaacatgat |
6235270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0899 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0899
Description:
Target: scaffold0899; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 205
Target Start/End: Original strand, 3145 - 3265
Alignment:
| Q |
84 |
tgcaaatgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttcaggtggataagagcataattgattatcttcaaaaacag |
183 |
Q |
| |
|
|||||||||||| |||||||| |||| | |||||| || ||||||||||||||||||||| ||| || ||||||||||||||||||||| ||| ||| |
|
|
| T |
3145 |
tgcaaatgcttttcttaaatctaatccgcctatttctgaaaaagttcttaccaaagcttttcgagtgcattagagcataattgattatcttc-aaagcag |
3243 |
T |
|
| Q |
184 |
tcttggtatgacaacaactagt |
205 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
3244 |
tcttggtatgacaataactagt |
3265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1230 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1230
Description:
Target: scaffold1230; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 202
Target Start/End: Complemental strand, 1259 - 1140
Alignment:
| Q |
83 |
ttgcaaatgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttcaggtggataagagcataattgattatcttcaaaaaca |
182 |
Q |
| |
|
||||||||||||||||||||||| || | ||||| | ||||||||| ||||| ||||| || || | |||||||||||||||||| |||| || |
|
|
| T |
1259 |
ttgcaaatgctttgtttaaatctacgccgcctatttttcagaaagttcttagcaaagtttttcgagtagactaaagcataattgattatctttaaaagca |
1160 |
T |
|
| Q |
183 |
gtcttggtatgacaacaact |
202 |
Q |
| |
|
|||||| |||||||| |||| |
|
|
| T |
1159 |
gtcttgatatgacaataact |
1140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 14437443 - 14437512
Alignment:
| Q |
77 |
tcactgttgcaaatgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttca |
146 |
Q |
| |
|
||||| ||||||||||||||||||||||| || | | |||||| || |||||||||| || |||||||| |
|
|
| T |
14437443 |
tcactattgcaaatgctttgtttaaatctaatacacctatttctgaaaaagttcttacgaatgcttttca |
14437512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 349 times since January 2019
Visitors: 2564