View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0300_low_12 (Length: 287)

Name: NF0300_low_12
Description: NF0300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0300_low_12
NF0300_low_12
[»] scaffold0091 (3 HSPs)
scaffold0091 (122-209)||(28907-28994)
scaffold0091 (137-209)||(24710-24782)
scaffold0091 (3-59)||(29057-29113)
[»] chr7 (8 HSPs)
chr7 (122-209)||(16060364-16060449)
chr7 (136-209)||(9080196-9080269)
chr7 (147-209)||(48376627-48376689)
chr7 (3-59)||(16060512-16060568)
chr7 (3-59)||(48376787-48376843)
chr7 (147-209)||(16069015-16069077)
chr7 (22-59)||(9080338-9080375)
chr7 (3-59)||(4531809-4531865)
[»] scaffold0063 (2 HSPs)
scaffold0063 (122-209)||(28443-28528)
scaffold0063 (21-59)||(28342-28380)
[»] scaffold0003 (2 HSPs)
scaffold0003 (135-209)||(130623-130697)
scaffold0003 (3-59)||(130795-130851)
[»] chr6 (4 HSPs)
chr6 (135-209)||(14980458-14980532)
chr6 (3-59)||(14989434-14989490)
chr6 (3-57)||(14980322-14980376)
chr6 (22-59)||(10906902-10906939)
[»] chr3 (9 HSPs)
chr3 (135-209)||(16642123-16642197)
chr3 (135-209)||(4712995-4713069)
chr3 (135-203)||(14062981-14063049)
chr3 (3-57)||(4712859-4712913)
chr3 (136-209)||(14055221-14055294)
chr3 (3-56)||(16642300-16642353)
chr3 (3-59)||(14055096-14055152)
chr3 (3-59)||(14062837-14062893)
chr3 (10-55)||(13926915-13926960)
[»] chr8 (5 HSPs)
chr8 (148-209)||(23657638-23657699)
chr8 (148-209)||(23658413-23658474)
chr8 (3-59)||(23657751-23657807)
chr8 (4-59)||(23658526-23658581)
chr8 (147-209)||(17862251-17862313)
[»] scaffold0218 (2 HSPs)
scaffold0218 (122-209)||(14227-14314)
scaffold0218 (3-58)||(14378-14433)
[»] chr1 (4 HSPs)
chr1 (135-209)||(13882462-13882536)
chr1 (3-59)||(13882295-13882351)
chr1 (3-59)||(51658721-51658777)
chr1 (138-209)||(51658854-51658925)
[»] scaffold0061 (1 HSPs)
scaffold0061 (135-209)||(18097-18171)
[»] scaffold1043 (1 HSPs)
scaffold1043 (147-209)||(1432-1494)
[»] chr4 (1 HSPs)
chr4 (152-209)||(19728457-19728514)
[»] chr5 (3 HSPs)
chr5 (152-209)||(24832209-24832266)
chr5 (147-204)||(25756788-25756845)
chr5 (147-204)||(25790956-25791013)
[»] scaffold1269 (1 HSPs)
scaffold1269 (3-36)||(1-34)


Alignment Details
Target: scaffold0091 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 28994 - 28907
Alignment:
Q  122 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 209  Q
    |||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28994 gggtggtgtgtaaatatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 28907  T

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Target: scaffold0091; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 24782 - 24710
Alignment:
Q  137 atatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 209  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24782 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 24710  T

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Target: scaffold0091; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 29113 - 29057
Alignment:
Q  3 atgtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag 59  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29113 atgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag 29057  T

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Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 16060449 - 16060364
Alignment:
Q  122 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 209  Q
    |||||||||||||||||||| ||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16060449 gggtggtgtgtaaatatatatat--tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 16060364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 9080269 - 9080196
Alignment:
Q  136 tatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 209  Q
    |||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9080269 tatatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 9080196  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 48376689 - 48376627
Alignment:
Q  147 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 209  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  48376689 tgactatgagaatgatgacgtataattatgatgatgacttaaatgatggtgtctaatatacat 48376627  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 16060568 - 16060512
Alignment:
Q  3 atgtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag 59  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  16060568 atgtaattaaataaatatgatgagaaatgataatgtttatatgttagtgatgatgag 16060512  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 48376843 - 48376787
Alignment:
Q  3 atgtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag 59  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  48376843 atgtaattaaataaatacgatgagaaatgataatgtttatatgttattgatgatgag 48376787  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 16069015 - 16069077
Alignment:
Q  147 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 209  Q
    |||| |||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||    
T  16069015 tgacgatgagaatgatgacgtataattatgatgatgatttgaatgatgatgtctaatatacat 16069077  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 9080375 - 9080338
Alignment:
Q  22 atgagagatgataatgtttatatgttagtgatgatgag 59  Q
    |||||| |||||||||||||||||||||||||||||||    
T  9080375 atgagaaatgataatgtttatatgttagtgatgatgag 9080338  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 4531809 - 4531865
Alignment:
Q  3 atgtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag 59  Q
    |||||| ||||||||||| |||||| || |||||| |||||| ||| ||||||||||    
T  4531809 atgtaaataaataaatacaatgagaaataataatgcttatattttattgatgatgag 4531865  T

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Target: scaffold0063 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 28443 - 28528
Alignment:
Q  122 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 209  Q
    |||||||||||||||||||| ||  ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  28443 gggtggtgtgtaaatatatatat--tgactatgagaatgacgacgtataattatgatgatgaattgaatgatggtgtctaatatacat 28528  T

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Target: scaffold0063; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 28342 - 28380
Alignment:
Q  21 gatgagagatgataatgtttatatgttagtgatgatgag 59  Q
    ||||||| ||||| |||||||||||||||||||||||||    
T  28342 gatgagaaatgatgatgtttatatgttagtgatgatgag 28380  T

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Target: scaffold0003 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 130697 - 130623
Alignment:
Q  135 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 209  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  130697 atatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 130623  T

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Target: scaffold0003; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 130851 - 130795
Alignment:
Q  3 atgtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag 59  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  130851 atgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag 130795  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 14980458 - 14980532
Alignment:
Q  135 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 209  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14980458 atatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 14980532  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 14989434 - 14989490
Alignment:
Q  3 atgtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag 59  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14989434 atgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag 14989490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 14980322 - 14980376
Alignment:
Q  3 atgtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatg 57  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14980322 atgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatg 14980376  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 10906902 - 10906939
Alignment:
Q  22 atgagagatgataatgtttatatgttagtgatgatgag 59  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  10906902 atgagaaatgataatgtttatattttagtgatgatgag 10906939  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 16642197 - 16642123
Alignment:
Q  135 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 209  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16642197 atatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 16642123  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 4712995 - 4713069
Alignment:
Q  135 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 209  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  4712995 atatatatatattgactatgagaatgacgacgtataattatgatgataacttgaatgatggtgtctaatatacat 4713069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 14062981 - 14063049
Alignment:
Q  135 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaat 203  Q
    ||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14062981 atatatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaatgatggtgtctaat 14063049  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 4712859 - 4712913
Alignment:
Q  3 atgtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatg 57  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4712859 atgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatg 4712913  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 14055221 - 14055294
Alignment:
Q  136 tatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 209  Q
    |||||| ||| |||| |||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  14055221 tatatatatattgacgatgataatgatgacgtataattatgatgatgacttgaatgatgatgtctaatatacat 14055294  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 16642353 - 16642300
Alignment:
Q  3 atgtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgat 56  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16642353 atgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgat 16642300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 14055096 - 14055152
Alignment:
Q  3 atgtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag 59  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  14055096 atgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgataatgag 14055152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 14062837 - 14062893
Alignment:
Q  3 atgtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag 59  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  14062837 atgtaattaaataaatacgatgagaaatgataatgtttatatgttagttatgatgag 14062893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 13926915 - 13926960
Alignment:
Q  10 taaataaatacgatgagagatgataatgtttatatgttagtgatga 55  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||    
T  13926915 taaataaatacgatgagaaatgataatgtttatattttagtgatga 13926960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 23657699 - 23657638
Alignment:
Q  148 gactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 209  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23657699 gactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 23657638  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 23658474 - 23658413
Alignment:
Q  148 gactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 209  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  23658474 gactatgagaatgacgacttataattatgatgatgacttgaatgatggtgtctaatatacat 23658413  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 23657807 - 23657751
Alignment:
Q  3 atgtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag 59  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  23657807 atgtaattaaataaatacgatgagaaattataatgtttatatgttagtgatgatgag 23657751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 23658581 - 23658526
Alignment:
Q  4 tgtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag 59  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  23658581 tgtaattaaataaatacgatgagaaattataatgtttatatgttagtgatgatgag 23658526  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 17862251 - 17862313
Alignment:
Q  147 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 209  Q
    |||| ||||||||||  | |||||||||||||||||| |||||||||| ||||||||||||||    
T  17862251 tgacgatgagaatgataaggtataattatgatgatgatttgaatgatgatgtctaatatacat 17862313  T

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Target: scaffold0218 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 14314 - 14227
Alignment:
Q  122 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 209  Q
    |||||||||||  ||||||| ||| ||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||    
T  14314 gggtggtgtgtgtatatatatatattgactatgacaatgatgacgtataattatgatgatgacttatatgatggtgtctaatatacat 14227  T

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Target: scaffold0218; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 14433 - 14378
Alignment:
Q  3 atgtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatga 58  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14433 atgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatga 14378  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 13882462 - 13882536
Alignment:
Q  135 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 209  Q
    ||||||| |||  ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13882462 atatatatatatagacaatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 13882536  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 13882295 - 13882351
Alignment:
Q  3 atgtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag 59  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13882295 atgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag 13882351  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 51658721 - 51658777
Alignment:
Q  3 atgtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag 59  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  51658721 atgtaattaaataaatacgatgagaaatgataatatttatatgttagtgatgatgag 51658777  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 209
Target Start/End: Original strand, 51658854 - 51658925
Alignment:
Q  138 tatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 209  Q
    |||| ||| |||| |||||||||| ||||||||||||||||||||||||||| |||| | ||||||||||||    
T  51658854 tatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaacgatgatatctaatatacat 51658925  T

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Target: scaffold0061 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 18097 - 18171
Alignment:
Q  135 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 209  Q
    ||||||| ||| ||||||||||||||| || |||| |||||||||||||||||||||||||| ||||||||||||    
T  18097 atatatatatattgactatgagaatgacgaagtatgattatgatgatgacttgaatgatggtatctaatatacat 18171  T

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Target: scaffold1043 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 1432 - 1494
Alignment:
Q  147 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 209  Q
    |||| ||||||||||  |||||||||||||||||||| |||||||||| ||||||||||||||    
T  1432 tgacgatgagaatgataacgtataattatgatgatgatttgaatgatgatgtctaatatacat 1494  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 19728457 - 19728514
Alignment:
Q  152 atgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 209  Q
    ||||||||||  | |||||||||||||||||| |||||||||| ||||||||||||||    
T  19728457 atgagaatgataaagtataattatgatgatgatttgaatgatgatgtctaatatacat 19728514  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 24832209 - 24832266
Alignment:
Q  152 atgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacat 209  Q
    |||||||||| || |||||||||||||||||| |||||||||| |  |||||||||||    
T  24832209 atgagaatgatgatgtataattatgatgatgatttgaatgatgattcctaatatacat 24832266  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 25756788 - 25756845
Alignment:
Q  147 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaata 204  Q
    |||| |||||||||| ||| ||||||||||||||||| |||||||||| |||| ||||    
T  25756788 tgacgatgagaatgatgacttataattatgatgatgatttgaatgatgatgtcaaata 25756845  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 204
Target Start/End: Complemental strand, 25791013 - 25790956
Alignment:
Q  147 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaata 204  Q
    |||| |||||||||| ||| ||||||||||||||||| |||||||||| |||| ||||    
T  25791013 tgacgatgagaatgatgacttataattatgatgatgatttgaatgatgatgtcgaata 25790956  T

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Target: scaffold1269 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 34 - 1
Alignment:
Q  3 atgtaattaaataaatacgatgagagatgataat 36  Q
    ||||||||||||||||||||||||| ||||||||    
T  34 atgtaattaaataaatacgatgagaaatgataat 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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