View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0300_low_14 (Length: 282)
Name: NF0300_low_14
Description: NF0300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0300_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 108 - 242
Target Start/End: Complemental strand, 11321129 - 11320995
Alignment:
| Q |
108 |
gattaccgccatatcgaaatattcgatctcgaaacgaaaacgtttcagaaaataacatattcagtaaatcctgattttcatcactataatccatttgttt |
207 |
Q |
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| T |
11321129 |
gattaccgccatatcgaaatattcgatctcgaaacgaaaacgtttcagaaaataacatattcagtaaatcctgattttcatcactataatccatttgttt |
11321030 |
T |
|
| Q |
208 |
cacctgattcttgttacattggttaccacaggttc |
242 |
Q |
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| T |
11321029 |
cacctgattcttgttacattggttaccaccggttc |
11320995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 108 - 242
Target Start/End: Complemental strand, 11479150 - 11479016
Alignment:
| Q |
108 |
gattaccgccatatcgaaatattcgatctcgaaacgaaaacgtttcagaaaataacatattcagtaaatcctgattttcatcactataatccatttgttt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11479150 |
gattaccgccatatcgaaatattcgatctcgaaacgaaaacgtttcagaaaataacatattcagtaaatcctgattttcatcactataatccatttgttt |
11479051 |
T |
|
| Q |
208 |
cacctgattcttgttacattggttaccacaggttc |
242 |
Q |
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| T |
11479050 |
cacctgattcttgttacattggttaccaccggttc |
11479016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 11459668 - 11459604
Alignment:
| Q |
172 |
taaatcctgattttcatcactataatccatttgtttcacctgattcttgttacattggttaccac |
236 |
Q |
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| T |
11459668 |
taaaccctaattttcaccactataatccatttatctcccgtgattcttgttacctcggttaccac |
11459604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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