View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0300_low_16 (Length: 251)
Name: NF0300_low_16
Description: NF0300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0300_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 111 - 243
Target Start/End: Original strand, 40433337 - 40433467
Alignment:
| Q |
111 |
ttaataaaggttaagagttttattcgtaaaaacaatcaccttgatgagtgccatattttccatgattaaggagtgtgtaattagcttctggctgcgaatc |
210 |
Q |
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| T |
40433337 |
ttaataaaggttaagagttttattcgtaaaaacaatcaccttgatgagtgccatattttccatgattaggga--gtgtaattagcttctggctgcgaatc |
40433434 |
T |
|
| Q |
211 |
cggacccaaagcagcaacatccttagtataatc |
243 |
Q |
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| T |
40433435 |
cggacccaaagcagcaacatccttaatataatc |
40433467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 40432514 - 40432614
Alignment:
| Q |
1 |
catgaacaaaattaaactttgaacttatcacattttatttgatgtgatgaatgtgagacgatgttacatgtttttggtttttctatctatcatgcataaa |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
40432514 |
catgaacaaaattaaactttgaacttaccacattttatttgatgtgatgaatgtgagacgttgttacatgtttttggtttt----tctatcatgcataaa |
40432609 |
T |
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| Q |
101 |
tttat |
105 |
Q |
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||||| |
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| T |
40432610 |
tttat |
40432614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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