View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0300_low_2 (Length: 474)
Name: NF0300_low_2
Description: NF0300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0300_low_2 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 278 - 474
Target Start/End: Complemental strand, 35443420 - 35443224
Alignment:
| Q |
278 |
atgtctctaattagttgttaatattatctctaatatttgcgatacgtcaagtggatccgcaatgcatactcttattactcgtcaagatgttgaccaggta |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35443420 |
atgtctctaattagttgttaatattatctctaatatttgcgatacgtcaagtggatccgcaatgcatactcttattactcgtcaagatgttgaccaggta |
35443321 |
T |
|
| Q |
378 |
attaattgacctctctctaatgatatgatacacttcactcattgttgatttagaatagaattttgcgaaaataaacaaaggaatcacctttgttctt |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35443320 |
attaattgacctctctctaatgatatgatacacttcactcattgttgatttagaatagaattttgcgaaaataaacaaaggaatcacctttgttctt |
35443224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 35443677 - 35443538
Alignment:
| Q |
7 |
tgacatatatttcagattagatacatcaattatctaataaatctaaaatgtcaaactgtgaattataatatctaaataaaaatgttatttattcaaaaag |
106 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35443677 |
tgacatatatttcagactagatacatcaattatctaataaatctaaaaagtcaaactgtgaattagaatatctaaataaaaatgttatttattcaaaaag |
35443578 |
T |
|
| Q |
107 |
tcaaataatttgattttgtaccttgaatatataattttat |
146 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35443577 |
ttaaataatttgattttgtacattgaatatataattttat |
35443538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 6500044 - 6500011
Alignment:
| Q |
27 |
atacatcaattatctaataaatctaaaatgtcaa |
60 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
6500044 |
atacatcaattatttaataaatctaaaatgtcaa |
6500011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 208 times since January 2019
Visitors: 2563