View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0300_low_5 (Length: 379)
Name: NF0300_low_5
Description: NF0300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0300_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 11 - 356
Target Start/End: Complemental strand, 9928664 - 9928319
Alignment:
| Q |
11 |
cagagaacaggactgttaaaaacaaagtggtccaagttaagcactttattcaaatttactaggaaaaaccatacattatgcagtgacagaaaattgttac |
110 |
Q |
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| T |
9928664 |
cagagaacaggactgttaaaaacaaagtggtccaagttaagcactttattcaaatttactaggaaaaaccatacattatgcagtgacagaaaattgttac |
9928565 |
T |
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| Q |
111 |
cttactcccacaactactttgaagtcatcttctaatgatcttttgatatacttttggaaattaaatttacttccgggagctagatggacctatacataag |
210 |
Q |
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| T |
9928564 |
cttactcccacaactactttgaagtcatcttctaatgatcttttgatatacttttggaaattaaatttacttccgggagctagatggacctatacataag |
9928465 |
T |
|
| Q |
211 |
ttaaagaaggaaggtaaatatggttttgaattgtgttccacaactgcaattgtgtccgcaatgtaaaagttttagatgtctctgcaacaacaattgcgca |
310 |
Q |
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| T |
9928464 |
ttaaagaaggaaggtaaatatggttttgaattgtgttccacaactgcaattgtgtccgcaatgtaaaagttttagatgtctctgcaacaacaattgcgca |
9928365 |
T |
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| Q |
311 |
agtatttttgttaaacatgctatatgaggaatgtgcaattacttac |
356 |
Q |
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| T |
9928364 |
agtattattgttaaacatgctatatgaggaatgtgcaattacttac |
9928319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 16950827 - 16950881
Alignment:
| Q |
239 |
aattgtgttccacaactgcaattgtgtccgcaatgtaaaagttttagatgtctct |
293 |
Q |
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| T |
16950827 |
aattgtggtccgcaactgcaattgtggccgcaatataacagttttagaggtctct |
16950881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 30919873 - 30919952
Alignment:
| Q |
105 |
tgttaccttactcccacaactactttgaagtcatcttctaatgatcttttgatatacttttggaaattaaatttacttcc |
184 |
Q |
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| T |
30919873 |
tgttacctgactccaacaaccaccttgaagtcatcctccaaggatcttttgatatatttttgaaagttaaatttacttcc |
30919952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 202
Target Start/End: Complemental strand, 54216463 - 54216368
Alignment:
| Q |
107 |
ttaccttactcccacaactactttgaagtcatcttctaatgatcttttgatatacttttggaaattaaatttacttccgggagctagatggaccta |
202 |
Q |
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| T |
54216463 |
ttacctgattcctacaactaccttaaagtcatcttctaatgacctcttgatatatttttgaaaatcaaacttacttccaggtgctaaatggaccta |
54216368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 240 - 302
Target Start/End: Complemental strand, 5630993 - 5630931
Alignment:
| Q |
240 |
attgtgttccacaactgcaattgtgtccgcaatgtaaaagttttagatgtctctgcaacaaca |
302 |
Q |
| |
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| T |
5630993 |
attgtgctccgcaactgcaattgttgccgcaatataaaggttttagatgtctctgcaacaaca |
5630931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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