View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0300_low_8 (Length: 324)
Name: NF0300_low_8
Description: NF0300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0300_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 96 - 242
Target Start/End: Original strand, 42394003 - 42394149
Alignment:
| Q |
96 |
ctacatccttcaccattcgttcaccaatcatcttttcaaatattccatcaaaacgaggcaccaaaagattcatatctttcacaataccctgcaaatcaaa |
195 |
Q |
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| T |
42394003 |
ctacatccttcaccattcgttcaccaatcatcttttcaaatattccatcaaaacgaggcaccaaaagattcatatctttcacaataccctgcaaatcaaa |
42394102 |
T |
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| Q |
196 |
ccgagccaacgaaggnnnnnnntccgacaagttcggcttccctatga |
242 |
Q |
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| T |
42394103 |
ccgagccagcgcaggaaaaaaatctgacaagttcggcttccctatga |
42394149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 42378104 - 42378197
Alignment:
| Q |
112 |
tcgttcaccaatcatcttttcaaatattccatcaaaacgaggcaccaaaagattcatatctttcacaataccctgcaaatcaaaccgagccaac |
205 |
Q |
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|||||||||||||||||| |||||||| |||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
42378104 |
tcgttcaccaatcatcttctcaaatatcccatcaaagcgaggcaccaaagcattcatatctttcacaacaccctgcaaatcaaaccgggccaac |
42378197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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