View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0301-INSERTION-11 (Length: 638)
Name: NF0301-INSERTION-11
Description: NF0301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0301-INSERTION-11 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-129; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 376 - 638
Target Start/End: Complemental strand, 48966040 - 48965778
Alignment:
| Q |
376 |
caaggctggaacctgtaaagaaattaccactggcaagagagcttggattgcagccacatcaggttgctatatgattttagaaaagaagagctccatggaa |
475 |
Q |
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| T |
48966040 |
caaggctggaacctgtaaagaaattacaactggcaagagagcttggattgcagccacatcaggttgctatatgattttagaaaagaagagctccatggaa |
48965941 |
T |
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| Q |
476 |
gccaattataaccatttggcctcacatcacagtttgttgctcttacgaaagagcaccaggcattgctgctattgctggttcttaaattagactaattaac |
575 |
Q |
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| T |
48965940 |
gccaattataaccatttggcctcacatcacagtttgttgctcttaagaaagagcaccaggcattgctgctattgctggttcttaaattatactaattaac |
48965841 |
T |
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| Q |
576 |
attcattatcagtgtttgtgatttttgttttagtaaacagatgcaatgttgaatgatcaaatg |
638 |
Q |
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| T |
48965840 |
attcattattagtgtttgtgattttctttttagtaaacagatgcaatgttgaatgatccaatg |
48965778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 163 - 276
Target Start/End: Complemental strand, 48966151 - 48966038
Alignment:
| Q |
163 |
ggatacttgagaaaacaaatggataggatccatttcagtttcagacagtatacacaagatgctaaatcacacggagtattctcgttcatcggaagaactt |
262 |
Q |
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| T |
48966151 |
ggatacttgagaaaacaaatggataggatccatttcagtttcagacagtatacacaagatgctaaatcacacggagtattctcgttcatcggaagaactt |
48966052 |
T |
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| Q |
263 |
acatcaccttacaa |
276 |
Q |
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| T |
48966051 |
acatcaccttacaa |
48966038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 48966246 - 48966197
Alignment:
| Q |
108 |
atattacatgacacatgagagtccattgaagcccgaactcacctcccatt |
157 |
Q |
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| T |
48966246 |
atattacatgacacatgagagttcattgaaacccgaactcacctcccatt |
48966197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 48966317 - 48966260
Alignment:
| Q |
52 |
catataatcactcaacgaataattaagatgataactgagttcattatgtcaaagctatatta |
113 |
Q |
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| T |
48966317 |
catataatcactcaacgaataa----gatgataacagagttcattatgtcaaagctaaatta |
48966260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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