View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0301-INSERTION-3 (Length: 811)
Name: NF0301-INSERTION-3
Description: NF0301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0301-INSERTION-3
Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 463 - 713
Target Start/End: Original strand, 42759283 - 42759533
Alignment:
Q
463
caacttgttatggttttccatactacaatagatgtgtagctgttcattaaattgattcttaaagcttagtttttaatgcatataaactgttaaacatggt
562
Q
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
42759283
caacttgttatggttttccatactataatagatgtgtagctgttcattaaattgattcttaaagcttagtttttaatgcatataaactgttaaacatggt
42759382
T
Q
563
atcaagcatgtatataaataaaattgtttaactgtatcattaaccatcaacagagaattacttagggaaaaatataaatggaatagaaatgaaactggga
662
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
T
42759383
atcaagcatgtatataaataaaattgtttaactgtatcattaaccatcaacagagaattacttagggaaaaatataaatggaattgaaatgaaact-aga
42759481
T
Q
663
tactt-aattaaacagaaatagtcttgaacaaaatagatttggcaaacttca
713
Q
||||| ||||||||||||||||||||||||||||||||||||||||||||||
T
42759482
tacttaaattaaacagaaatagtcttgaacaaaatagatttggcaaacttca
42759533
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 42759736 - 42759975
Alignment:
Q
8
gtatatatatacagagggaataaggtgcatgattgtgttaatatgcatgggaaaaagaggattacatatggatagatgtgttagttttcaaaacgaaagt
107
Q
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
T
42759736
gtatatatatacagagggaataaagtgcatgattgtgttaatatgcatgggaaaaagaggattacagatggatagatgtgttggttttcaaaacgaaagt
42759835
T
Q
108
tcaatagcccttaattactgttgtgctctattcaagcaaggggaattttgaaatacaaatacaaactaaatgaaaaactaaaggtttacataaaacacgg
207
Q
|||||| ||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
T
42759836
tcaataacccttaactaatgttgtgctctattcaagcaaggggaatttcgaaatacaaatacaaactaaatgaaaaactaaaggtttacataaaacaagg
42759935
T
Q
208
taaactaagcagaccacaataattgcattattttgaattc
247
Q
||||||||||||||||||||||||||||||||||||||||
T
42759936
taaactaagcagaccacaataattgcattattttgaattc
42759975
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 353 - 466
Target Start/End: Original strand, 42759037 - 42759150
Alignment:
Q
353
taaccttctatatttccagattagcagtgtttcatataaacgcaacatttctttaatagagtgttgtaaagaggtagttattggtgtttttagtttttat
452
Q
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
T
42759037
taaccttctatattttcagattagcagtgtttcatataaacgcaacatttctttaatagagtgttgtaaagaggcagttattgttgtttttagtttttat
42759136
T
Q
453
tcctctgcttcaac
466
Q
|||||| |||||||
T
42759137
tcctctacttcaac
42759150
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 213; Significance: 1e-116; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 1402109 - 1401873
Alignment:
Q
11
tatatatacagagggaataaggtgcatgattgtgttaatatgcatgggaaaaagaggattacatatggatagatgtgttagttttcaaaacgaaagttca
110
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
T
1402109
tatatatacagagggaataaggtgcatgattgtgttaatatgcatgggaaaaagaggattacatatggatagatgtgttggttttcaaaacgaaagttca
1402010
T
Q
111
atagcccttaattactgttgtgctctattcaagcaaggggaattttgaaatacaaatacaaactaaatgaaaaactaaaggtttacataaaacacggtaa
210
Q
||||||||| |||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
T
1402009
atagcccttgattaatgttgtgttgtattcaagcaaggggaattttgaaatacaaatacaaactaaatggaaaactaaaggtttacataaaacacggtaa
1401910
T
Q
211
actaagcagaccacaataattgcattattttgaattc
247
Q
|||||||||||||||||||||||||||||||||||||
T
1401909
actaagcagaccacaataattgcattattttgaattc
1401873
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 509 - 713
Target Start/End: Complemental strand, 1402504 - 1402301
Alignment:
Q
509
ttaaattgattcttaaagcttagtttttaatgcatataaactgttaaacatggtatcaagcatgtatataaataaaattgtttaactgtatcattaacca
608
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
T
1402504
ttaaattgattcttaaagcttagtttttaatgcatataaactgttaaacatggtatcaagcatatatataaataaaattgtttaactgtatcattaacca
1402405
T
Q
609
tcaacagagaattacttagggaaaaatataaatggaatagaaatgaaactgggatacttaattaaacagaaatagtcttgaacaaaatagatttggcaaa
708
Q
||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
T
1402404
tcaacagagaattacttagggcaaaatataaatggaattgaaatgaaact-ggatacttaattaaacagatatagtcttgaacaaaatagatttggcaaa
1402306
T
Q
709
cttca
713
Q
||||
T
1402305
tttca
1402301
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 250 - 335
Target Start/End: Complemental strand, 1402878 - 1402793
Alignment:
Q
250
aaaataacaattaaactaaaacttcacgccaagtccataggtaagttgttaaatttaattcacaccccaaatacatgcctccattt
335
Q
|||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
T
1402878
aaaaaaacaattaaactaaaacttaacgccaagtccataggtaagctgttaaatttaattcacaccccaaatacatgcctccattt
1402793
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 463 - 517
Target Start/End: Complemental strand, 1402732 - 1402678
Alignment:
Q
463
caacttgttatggttttccatactacaatagatgtgtagctgttcattaaattga
517
Q
|||||||||||||||||||||| || ||||||||||||| |||||||||||||||
T
1402732
caacttgttatggttttccatattataatagatgtgtagttgttcattaaattga
1402678
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
© Oklahoma State University
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