View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0301-INSERTION-3 (Length: 811)
Name: NF0301-INSERTION-3
Description: NF0301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0301-INSERTION-3 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 463 - 713
Target Start/End: Original strand, 42759283 - 42759533
Alignment:
Q |
463 |
caacttgttatggttttccatactacaatagatgtgtagctgttcattaaattgattcttaaagcttagtttttaatgcatataaactgttaaacatggt |
562 |
Q |
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T |
42759283 |
caacttgttatggttttccatactataatagatgtgtagctgttcattaaattgattcttaaagcttagtttttaatgcatataaactgttaaacatggt |
42759382 |
T |
 |
Q |
563 |
atcaagcatgtatataaataaaattgtttaactgtatcattaaccatcaacagagaattacttagggaaaaatataaatggaatagaaatgaaactggga |
662 |
Q |
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T |
42759383 |
atcaagcatgtatataaataaaattgtttaactgtatcattaaccatcaacagagaattacttagggaaaaatataaatggaattgaaatgaaact-aga |
42759481 |
T |
 |
Q |
663 |
tactt-aattaaacagaaatagtcttgaacaaaatagatttggcaaacttca |
713 |
Q |
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T |
42759482 |
tacttaaattaaacagaaatagtcttgaacaaaatagatttggcaaacttca |
42759533 |
T |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 42759736 - 42759975
Alignment:
Q |
8 |
gtatatatatacagagggaataaggtgcatgattgtgttaatatgcatgggaaaaagaggattacatatggatagatgtgttagttttcaaaacgaaagt |
107 |
Q |
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T |
42759736 |
gtatatatatacagagggaataaagtgcatgattgtgttaatatgcatgggaaaaagaggattacagatggatagatgtgttggttttcaaaacgaaagt |
42759835 |
T |
 |
Q |
108 |
tcaatagcccttaattactgttgtgctctattcaagcaaggggaattttgaaatacaaatacaaactaaatgaaaaactaaaggtttacataaaacacgg |
207 |
Q |
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T |
42759836 |
tcaataacccttaactaatgttgtgctctattcaagcaaggggaatttcgaaatacaaatacaaactaaatgaaaaactaaaggtttacataaaacaagg |
42759935 |
T |
 |
Q |
208 |
taaactaagcagaccacaataattgcattattttgaattc |
247 |
Q |
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T |
42759936 |
taaactaagcagaccacaataattgcattattttgaattc |
42759975 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 353 - 466
Target Start/End: Original strand, 42759037 - 42759150
Alignment:
Q |
353 |
taaccttctatatttccagattagcagtgtttcatataaacgcaacatttctttaatagagtgttgtaaagaggtagttattggtgtttttagtttttat |
452 |
Q |
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T |
42759037 |
taaccttctatattttcagattagcagtgtttcatataaacgcaacatttctttaatagagtgttgtaaagaggcagttattgttgtttttagtttttat |
42759136 |
T |
 |
Q |
453 |
tcctctgcttcaac |
466 |
Q |
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T |
42759137 |
tcctctacttcaac |
42759150 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 213; Significance: 1e-116; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 1402109 - 1401873
Alignment:
Q |
11 |
tatatatacagagggaataaggtgcatgattgtgttaatatgcatgggaaaaagaggattacatatggatagatgtgttagttttcaaaacgaaagttca |
110 |
Q |
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T |
1402109 |
tatatatacagagggaataaggtgcatgattgtgttaatatgcatgggaaaaagaggattacatatggatagatgtgttggttttcaaaacgaaagttca |
1402010 |
T |
 |
Q |
111 |
atagcccttaattactgttgtgctctattcaagcaaggggaattttgaaatacaaatacaaactaaatgaaaaactaaaggtttacataaaacacggtaa |
210 |
Q |
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T |
1402009 |
atagcccttgattaatgttgtgttgtattcaagcaaggggaattttgaaatacaaatacaaactaaatggaaaactaaaggtttacataaaacacggtaa |
1401910 |
T |
 |
Q |
211 |
actaagcagaccacaataattgcattattttgaattc |
247 |
Q |
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T |
1401909 |
actaagcagaccacaataattgcattattttgaattc |
1401873 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 509 - 713
Target Start/End: Complemental strand, 1402504 - 1402301
Alignment:
Q |
509 |
ttaaattgattcttaaagcttagtttttaatgcatataaactgttaaacatggtatcaagcatgtatataaataaaattgtttaactgtatcattaacca |
608 |
Q |
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T |
1402504 |
ttaaattgattcttaaagcttagtttttaatgcatataaactgttaaacatggtatcaagcatatatataaataaaattgtttaactgtatcattaacca |
1402405 |
T |
 |
Q |
609 |
tcaacagagaattacttagggaaaaatataaatggaatagaaatgaaactgggatacttaattaaacagaaatagtcttgaacaaaatagatttggcaaa |
708 |
Q |
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T |
1402404 |
tcaacagagaattacttagggcaaaatataaatggaattgaaatgaaact-ggatacttaattaaacagatatagtcttgaacaaaatagatttggcaaa |
1402306 |
T |
 |
Q |
709 |
cttca |
713 |
Q |
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|||| |
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T |
1402305 |
tttca |
1402301 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 250 - 335
Target Start/End: Complemental strand, 1402878 - 1402793
Alignment:
Q |
250 |
aaaataacaattaaactaaaacttcacgccaagtccataggtaagttgttaaatttaattcacaccccaaatacatgcctccattt |
335 |
Q |
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T |
1402878 |
aaaaaaacaattaaactaaaacttaacgccaagtccataggtaagctgttaaatttaattcacaccccaaatacatgcctccattt |
1402793 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 463 - 517
Target Start/End: Complemental strand, 1402732 - 1402678
Alignment:
Q |
463 |
caacttgttatggttttccatactacaatagatgtgtagctgttcattaaattga |
517 |
Q |
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T |
1402732 |
caacttgttatggttttccatattataatagatgtgtagttgttcattaaattga |
1402678 |
T |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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