View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0301-INSERTION-6 (Length: 489)
Name: NF0301-INSERTION-6
Description: NF0301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0301-INSERTION-6 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 7 - 366
Target Start/End: Original strand, 2572757 - 2573116
Alignment:
| Q |
7 |
aacaacagcttgagaaataacttctctgaggctacatggtggtttgaacatctcctgtttttgaagattgatttgttagacaatgtcataaggaaaatga |
106 |
Q |
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| T |
2572757 |
aacaacagcttgagaaataacttctctgaggctacatggtggtttgaacatctcctgtttttgaagattgatttgttagacaatgtcataaggaaaatga |
2572856 |
T |
|
| Q |
107 |
tatctcatgattttgatcattctattgtatcaaagtttctattctattatcttaacttgagtcatggtggggctgaacaagatgttaagattgagacaat |
206 |
Q |
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| T |
2572857 |
tatctcatgatttcgatcattctattgtatcaaagtttctattctattatcttaacttgagtcatggtggggctgaacaagatgttaagattgagacaat |
2572956 |
T |
|
| Q |
207 |
taaggttgtaatcgatcttctttcattgcttgatattggatcaatttcttgcaaggatttgttcaatcttaatcgaattgctattagtttgaaaataagc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2572957 |
taaggttgtaatcgatcttctttcattgcttgatattggatcaatttcttgcaaggatttgttcaatcttaatcgaattgctattagtttgaaaataagc |
2573056 |
T |
|
| Q |
307 |
aaattttgtagaaacaatatagaaagtcttataggtcctctgttggatcaagtaacaatt |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2573057 |
aaattttgtagaaacaatatagaaagtcttataggtcctctgttggatcaagtaacaatt |
2573116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 363 - 489
Target Start/End: Original strand, 2572636 - 2572762
Alignment:
| Q |
363 |
aattctagacagaatcatggatcaattaatagaaagactagcttctccatgtcttgttacaagtccatacacatgttcttccaacagatccagcttccag |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2572636 |
aattctagacagaatcatggatcaattaatagaaagactagcttctccatgtcttgttacaagtccatacacatgttcttccaacagatccagcttccag |
2572735 |
T |
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| Q |
463 |
ttttcttgtgacacaagcagtaacaac |
489 |
Q |
| |
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| T |
2572736 |
ttttcttgtgacacaagcagtaacaac |
2572762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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