View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0301-INSERTION-7 (Length: 344)
Name: NF0301-INSERTION-7
Description: NF0301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0301-INSERTION-7 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 106 - 341
Target Start/End: Original strand, 19971423 - 19971658
Alignment:
| Q |
106 |
gtcgcgattctttcaccgcaacttatgttaatcaattataaaaaatgtatattttgcataattaaatgaagttgttgacaaaattccaacttttgttatg |
205 |
Q |
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| T |
19971423 |
gtcgcgattctttcaccgaaacttctgttaatcaattataaaaaatgtatattttgcatacttaaatgaagttgttgacaaaattccaacttttgttatg |
19971522 |
T |
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| Q |
206 |
catgggttaaagatcccaaagattacaagaaattttaaagaataaaagataaatgttataatttgtatggcttctgaaagaccaacctagattgtatagt |
305 |
Q |
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| T |
19971523 |
catgggttaaagatcccaaagattacaagaaattttaaagaataaaagataaatattataatttgtatggcttctgaaagaccaacctagattgtatagt |
19971622 |
T |
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| Q |
306 |
tcttaacaaactatcacagtatgctttggctgtaga |
341 |
Q |
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| T |
19971623 |
tcttaacaaactatcacagtatgctttggccgtaga |
19971658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 19971660 - 19971714
Alignment:
| Q |
11 |
aaatcatattttcctgtgtctataattatctttgagaagtttgcaaatacaattg |
65 |
Q |
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| T |
19971660 |
aaatcatattttcctgtgtctataattatctttgagaagtttgcaaatacaattg |
19971714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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