View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0301_low_1 (Length: 879)
Name: NF0301_low_1
Description: NF0301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0301_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 311 - 636
Target Start/End: Original strand, 44201751 - 44202092
Alignment:
| Q |
311 |
ggaaatggtccaaatggatcaagttgaagccataatataaagtgaaggacatggactatgagatccttacataatcacaagagaaaggattccatacaac |
410 |
Q |
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| T |
44201751 |
ggaaatggtccaaatggatcaagttgaagccataatataaagtgaaggacatggactatgagatccttacagaatcacaagagaaaggattccatacaac |
44201850 |
T |
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| Q |
411 |
catgctgtacgtgtttgctcgcgaatcgatagggtgcatatcttatgaaagggatgg------------atatatatatacactttagagtnnnnnnnnt |
498 |
Q |
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| T |
44201851 |
catgctgtacgtgtttgctcgcgaatcgatagggtgcatatcttatgaaagggatggatatatatatatatatatatataaactttagagtaaaagaaat |
44201950 |
T |
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| Q |
499 |
caattgttaatataaataaattctagataccaatccatatgggcatgcatggttgat----aaagatgattgataaggacactggggtatatatggaatt |
594 |
Q |
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| T |
44201951 |
caattgttaatataaataatttctagataccaatccatatgggcatgcatggttgataaagaaagatgattgataaggacactggggtatatatggaatt |
44202050 |
T |
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| Q |
595 |
taattatttattgttcactccaaattgagtaatgtgaaatga |
636 |
Q |
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| T |
44202051 |
taattatttattgttcactccaaattgagtaatgtgaaatga |
44202092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 30 - 280
Target Start/End: Original strand, 44201471 - 44201720
Alignment:
| Q |
30 |
attttcttgtaatgcccttcatagttcatactccttagtgctgcaaaaacttgttagtgttggtaaccaaactagttgggatgactcgtactaattaagc |
129 |
Q |
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| T |
44201471 |
attttcttgtaatgcccttcatagttcatactccttagtgctgcaaaaacttgttagtgttggtaaccaaactagttgggatgactcgtactaattaagc |
44201570 |
T |
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| Q |
130 |
cctttaatttgtaccccttgaacaggcaaatataactaatttattaaatnnnnnnnnntgatgtttgacttactcaaatatatgtgattctaaagtatcc |
229 |
Q |
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| T |
44201571 |
cctttaatttgtaccccttgaaaagccaaatataactaatttattaaa-aaaaaaaaatgatgtttgacttactcaaatatatgtgattctaaagtattc |
44201669 |
T |
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| Q |
230 |
aacgtataacaaaacatagccatagccgtccaaattaatgaatgtcaagtc |
280 |
Q |
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| T |
44201670 |
aacgtataacaaaacatagccatagccgtccaaattaatgaatgtcaagtc |
44201720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 631 - 802
Target Start/End: Original strand, 44202113 - 44202287
Alignment:
| Q |
631 |
aaatgattagggttatgactcatgaaataataattgtctgaagtctgaacataatgttctctgcaactcacgtgttggtggcttagcaatagtagcaggc |
730 |
Q |
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| T |
44202113 |
aaatgattagggttatgactcatgaaataataattgtctgaagtctgaacataatgttctctgcaactcacgtgttggtggcttagcaatagtagcagac |
44202212 |
T |
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| Q |
731 |
aggttcaactgc--ttataatggttctttcttggtttcatgttgttcaaattacgtctt-gtccctacgtctgtg |
802 |
Q |
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| T |
44202213 |
aggttcaactgcttttataatggttctttcttggtttcatgttgttcaaattacgtcttcgtccctacgtctgtg |
44202287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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