View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0301_low_2 (Length: 660)
Name: NF0301_low_2
Description: NF0301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0301_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 13 - 564
Target Start/End: Original strand, 36884651 - 36885202
Alignment:
| Q |
13 |
aatatcatttgggtattttaaaaaaggcttaatgttttacatgttgtaagaagtaatattgtaataagaggaaataaggacatatcaatagacaactgtg |
112 |
Q |
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| T |
36884651 |
aatatcatttgggtattttaaaaaaggcttaatgttttacatgttgtaagaagtaatattgtaataagaggaaataaggacatatcaatagacagctgtg |
36884750 |
T |
|
| Q |
113 |
taaaattggcttacaaacttagtgtatattcatagttatcaaactcaaattaatccttgtactggtgtaaattttttctcttcccttgaagaaatgaaaa |
212 |
Q |
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| T |
36884751 |
taaaattggcgtacaaactcagtgtatattcatagttatcaaactcaaattaatccttgtaccagtgtaaattttttctcttttcttgaagaaatgaaaa |
36884850 |
T |
|
| Q |
213 |
ggcttgtacatatgcactcatactataagcgcatacggaactagtgtttgattgagttgtttcttcaaannnnnnntaaattgaaaatgactatcatgta |
312 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36884851 |
ggcttgtacatatgcactcatactataagcgcatatggaactagtgtttgattgagttgtttcttcaaacaccccctaaattgaaaatgactatcatgta |
36884950 |
T |
|
| Q |
313 |
taagagccataggtgtaggttctcgatccttgtatatgattatgatgcctacgaggagcttatgaaagtaactttgagcatatcataagctaaatttgta |
412 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36884951 |
taagaaccataggtgtaggttctcgatccttgtatatgattatgatgcctacaaggagcttatgaaagtaactttgagcatatcataagctaaatttgta |
36885050 |
T |
|
| Q |
413 |
agttctgaatcctatctcacagccattttagtagctgaggtggggaggacaaaactaaaaagtattgttttgnnnnnnnaaaagtattgtgcgtagtgtc |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36885051 |
agttctgaatcctatctcacagccattttagtagctgaggtggggaggacaaaactaaaaagtattgttttgtttttttaaaagtattgtgcgtagtgtc |
36885150 |
T |
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| Q |
513 |
taaatagaaaacttttgtcgttgaagaacataatccctgtcaatgaaaatag |
564 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36885151 |
taaatagaaaacttttgtcgttgaagaacgtaatccctgtcaatgaaaatag |
36885202 |
T |
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