View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0301_low_3 (Length: 371)

Name: NF0301_low_3
Description: NF0301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0301_low_3
NF0301_low_3
[»] chr1 (14 HSPs)
chr1 (30-361)||(34142153-34142487)
chr1 (92-138)||(10356197-10356243)
chr1 (92-130)||(10841901-10841939)
chr1 (92-138)||(12213994-12214040)
chr1 (92-138)||(15382833-15382879)
chr1 (92-138)||(17651394-17651440)
chr1 (92-138)||(28832185-28832231)
chr1 (92-150)||(19620577-19620637)
chr1 (92-133)||(27172741-27172782)
chr1 (92-133)||(30279639-30279680)
chr1 (92-133)||(32209857-32209898)
chr1 (94-138)||(17339218-17339262)
chr1 (94-138)||(27785982-27786026)
chr1 (92-140)||(28712547-28712595)
[»] chr2 (18 HSPs)
chr2 (88-150)||(15427689-15427753)
chr2 (89-133)||(9547428-9547472)
chr2 (92-131)||(8761585-8761624)
chr2 (94-133)||(19159944-19159983)
chr2 (92-138)||(2256972-2257018)
chr2 (88-126)||(7276629-7276667)
chr2 (92-138)||(16204831-16204877)
chr2 (88-138)||(19549433-19549483)
chr2 (92-138)||(33063987-33064033)
chr2 (92-138)||(34977205-34977251)
chr2 (88-138)||(36359311-36359361)
chr2 (92-133)||(9964492-9964533)
chr2 (90-131)||(10991541-10991582)
chr2 (92-133)||(22523031-22523072)
chr2 (92-133)||(37119277-37119318)
chr2 (92-133)||(40967390-40967431)
chr2 (89-133)||(5168598-5168642)
chr2 (94-138)||(12599879-12599923)
[»] chr8 (14 HSPs)
chr8 (92-138)||(40795378-40795424)
chr8 (92-133)||(17062358-17062399)
chr8 (92-133)||(17585959-17586000)
chr8 (86-138)||(1877676-1877728)
chr8 (92-138)||(2554226-2554272)
chr8 (91-148)||(7987732-7987790)
chr8 (92-138)||(17898080-17898126)
chr8 (96-138)||(24195254-24195296)
chr8 (92-138)||(27718908-27718954)
chr8 (92-138)||(32421570-32421616)
chr8 (92-138)||(39433411-39433457)
chr8 (92-133)||(10982727-10982768)
chr8 (92-133)||(13357460-13357501)
chr8 (93-138)||(29546895-29546940)
[»] chr6 (9 HSPs)
chr6 (92-138)||(13496117-13496163)
chr6 (92-131)||(24212560-24212599)
chr6 (92-133)||(361755-361796)
chr6 (86-131)||(6799635-6799680)
chr6 (92-133)||(12904336-12904377)
chr6 (92-133)||(28951400-28951441)
chr6 (94-130)||(2445302-2445338)
chr6 (97-133)||(3373400-3373436)
chr6 (92-147)||(18256884-18256940)
[»] chr5 (15 HSPs)
chr5 (92-138)||(13864345-13864391)
chr5 (94-138)||(20721053-20721097)
chr5 (90-133)||(31159428-31159471)
chr5 (92-138)||(8545003-8545049)
chr5 (92-138)||(13796331-13796377)
chr5 (92-138)||(18589881-18589927)
chr5 (92-138)||(41650953-41650999)
chr5 (92-133)||(5001556-5001597)
chr5 (92-141)||(11720895-11720944)
chr5 (92-133)||(16076432-16076473)
chr5 (92-133)||(17046335-17046376)
chr5 (92-133)||(20927640-20927681)
chr5 (92-133)||(33369432-33369473)
chr5 (92-141)||(33645700-33645749)
chr5 (92-133)||(39610360-39610401)
[»] chr4 (15 HSPs)
chr4 (92-138)||(7371562-7371608)
chr4 (88-140)||(27537745-27537797)
chr4 (92-131)||(6459945-6459984)
chr4 (89-132)||(9196211-9196254)
chr4 (92-131)||(24837494-24837533)
chr4 (88-138)||(11949777-11949827)
chr4 (92-138)||(19124636-19124682)
chr4 (92-138)||(24885814-24885860)
chr4 (92-138)||(40070982-40071028)
chr4 (92-138)||(43034356-43034402)
chr4 (94-131)||(2422701-2422738)
chr4 (92-133)||(35021486-35021527)
chr4 (92-133)||(40847086-40847127)
chr4 (92-133)||(47007321-47007362)
chr4 (93-129)||(39146644-39146680)
[»] chr7 (16 HSPs)
chr7 (92-133)||(429197-429238)
chr7 (92-149)||(8883554-8883611)
chr7 (89-132)||(39043753-39043796)
chr7 (92-138)||(30793060-30793106)
chr7 (88-138)||(47342448-47342498)
chr7 (92-133)||(3672571-3672612)
chr7 (92-133)||(5317307-5317348)
chr7 (92-133)||(22991410-22991451)
chr7 (96-141)||(23413057-23413102)
chr7 (92-133)||(28200404-28200445)
chr7 (92-133)||(32315224-32315265)
chr7 (88-133)||(32855517-32855562)
chr7 (92-133)||(35142168-35142209)
chr7 (92-141)||(48065203-48065252)
chr7 (91-131)||(15015241-15015281)
chr7 (92-132)||(47960897-47960937)
[»] chr3 (13 HSPs)
chr3 (92-137)||(5941309-5941354)
chr3 (91-128)||(42784957-42784994)
chr3 (92-131)||(33404229-33404268)
chr3 (92-138)||(7824808-7824854)
chr3 (92-138)||(10843795-10843841)
chr3 (92-138)||(19468452-19468498)
chr3 (92-138)||(38130973-38131019)
chr3 (97-138)||(1111855-1111896)
chr3 (92-133)||(8942018-8942059)
chr3 (88-133)||(29631183-29631228)
chr3 (93-138)||(49975819-49975864)
chr3 (92-133)||(51882219-51882260)
chr3 (90-130)||(39100438-39100478)
[»] scaffold0118 (1 HSPs)
scaffold0118 (92-138)||(45413-45459)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 30 - 361
Target Start/End: Complemental strand, 34142487 - 34142153
Alignment:
Q  30 aatacatctagagattacagtgacaacgttacgcttatttagatatgaaaatggta-tactcatgagcttaactcagttgatatgcacaatacataatat 128  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||  | |||||||||||| |||||||| |||||||||||||||||||    
T  34142487 aatacatctagagattacggtgacaacgttacgcttatttagatatgaaaatggttgtgctcatgagcttagctcagttggtatgcacaatacataatat 34142388  T
Q  129 atgcatggtcgg-gttcaaatctgagccnnnnnnn-tatgaaaatggttgtttactcattgtactatctctaatatgctctttgtcgtttgttgatatta 226  Q
    ||||| ||| || |||| ||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34142387 atgcaaggttggagttcgaatctgagccaaaaaaaatatgaaaatggttgtttactcattgtactatctctaatatgctctttgtcgtttgttgatatta 34142288  T
Q  227 ccatcttgccctcattctaattttgcactcatgcatgggctgattaatttagtgattataaacacatttccactattattttcctagctcctaattattc 326  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34142287 ccatcttgccctcgttctaattttgcactcatgcatggactgattaatttagtgattataaacacatttccactattattttcctagctcctaattattc 34142188  T
Q  327 tcacatttgactaaatttagtgagtacggtctctg 361  Q
    |||||||||||||||||||||||||||||||||||    
T  34142187 tcacatttgactaaatttagtgagtacggtctctg 34142153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 10356243 - 10356197
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  10356243 tgagcttaactcagttggtatggacaatgcataatatatgcacggtc 10356197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 10841901 - 10841939
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatat 130  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  10841901 tgagcttaactcagttgatatggacaatgcataatatat 10841939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 12213994 - 12214040
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    |||||||| ||||||||||| | ||||||||||||||||||| ||||    
T  12213994 tgagcttagctcagttgataggaacaatacataatatatgcaaggtc 12214040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 15382879 - 15382833
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    |||||||||||||||||||||| |||||  |||||||||||| ||||    
T  15382879 tgagcttaactcagttgatatgaacaatgtataatatatgcaaggtc 15382833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 17651440 - 17651394
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||| |||||||||| ||||||||||| ||||||| ||||    
T  17651440 tgagcttaactaagttgatatggacaatacataaaatatgcaaggtc 17651394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 28832231 - 28832185
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  28832231 tgagcttaactcagttggtatgaacaatgcataatatatgcaaggtc 28832185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 150
Target Start/End: Original strand, 19620577 - 19620637
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc--gggttcaaatct 150  Q
    |||||||| |||||||| || | ||||||||||||||||||| ||||  ||||||||||||    
T  19620577 tgagcttagctcagttggtaaggacaatacataatatatgcaaggtccggggttcaaatct 19620637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 27172782 - 27172741
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    ||||||||||||||||| |||| |||| ||||||||||||||    
T  27172782 tgagcttaactcagttggtatggacaaaacataatatatgca 27172741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 30279680 - 30279639
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    |||||||| ||||||||||| | |||||||||||||||||||    
T  30279680 tgagcttagctcagttgataggtacaatacataatatatgca 30279639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 32209898 - 32209857
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    |||||||| ||||||||||| | |||||||||||||||||||    
T  32209898 tgagcttacctcagttgataggaacaatacataatatatgca 32209857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 17339218 - 17339262
Alignment:
Q  94 agcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||||||| |||| ||||||||||||||| ||| ||||    
T  17339218 agcttaactcagttggtatgaacaatacataatataagcaaggtc 17339262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 27786026 - 27785982
Alignment:
Q  94 agcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||||||| | || ||||||||||||||||||| ||||    
T  27786026 agcttaactcagttggtttgaacaatacataatatatgcaaggtc 27785982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 28712595 - 28712547
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtcgg 140  Q
    ||||| || |||||||| |||||||||| ||||||||||||| ||||||    
T  28712595 tgagcatagctcagttgttatgcacaatgcataatatatgcaaggtcgg 28712547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 15427689 - 15427753
Alignment:
Q  88 ctcatgagcttaactcagttgatatgcacaatacataatatatgcatggtc--gggttcaaatct 150  Q
    |||||||||||| ||||||||||||| |||||| |||||||||||| ||||  ||||||||||||    
T  15427689 ctcatgagcttagctcagttgatatggacaatatataatatatgcaaggtctagggttcaaatct 15427753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 9547472 - 9547428
Alignment:
Q  89 tcatgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    |||| |||||||||||||||||||| ||||| |||||||||||||    
T  9547472 tcataagcttaactcagttgatatggacaatgcataatatatgca 9547428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 8761624 - 8761585
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatg 131  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  8761624 tgagcttaactcagttggtatggacaatacataatatatg 8761585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 133
Target Start/End: Original strand, 19159944 - 19159983
Alignment:
Q  94 agcttaactcagttgatatgcacaatacataatatatgca 133  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  19159944 agcttaactcagttgatatgaacaatgcataatatatgca 19159983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 2256972 - 2257018
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  2256972 tgagcttaactcagttggtatggacaatgcataatatatgcaaggtc 2257018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 7276667 - 7276629
Alignment:
Q  88 ctcatgagcttaactcagttgatatgcacaatacataat 126  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  7276667 ctcatgagcttaactcagttgatagggacaatacataat 7276629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 16204877 - 16204831
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    |||||||||||||||||||| | ||||| ||||||||||||| ||||    
T  16204877 tgagcttaactcagttgataaggacaatgcataatatatgcaaggtc 16204831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 19549433 - 19549483
Alignment:
Q  88 ctcatgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    |||||||||||||||||| || |||| ||||| ||||||||||||| ||||    
T  19549433 ctcatgagcttaactcagctggtatgaacaatgcataatatatgcaaggtc 19549483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 33063987 - 33064033
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    |||||||| ||||||||||||| ||||| ||||||||||||| ||||    
T  33063987 tgagcttagctcagttgatatggacaatgcataatatatgcaaggtc 33064033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 34977205 - 34977251
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  34977205 tgagcttaactcagttggtatggacaatgcataatatatgcaaggtc 34977251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 36359311 - 36359361
Alignment:
Q  88 ctcatgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    |||||||||||||||| |||||| || ||||| ||||||||||||| ||||    
T  36359311 ctcatgagcttaactcggttgatttggacaatgcataatatatgcaaggtc 36359361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 9964492 - 9964533
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    |||| ||||||||||||||||| ||||||| |||||||||||    
T  9964492 tgagtttaactcagttgatatgaacaatacgtaatatatgca 9964533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 10991541 - 10991582
Alignment:
Q  90 catgagcttaactcagttgatatgcacaatacataatatatg 131  Q
    ||||||||||||||||||| || | |||||||||||||||||    
T  10991541 catgagcttaactcagttggtaaggacaatacataatatatg 10991582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 22523072 - 22523031
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    |||||||| |||||||| |||| |||||||||||||||||||    
T  22523072 tgagcttagctcagttggtatggacaatacataatatatgca 22523031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 37119318 - 37119277
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    |||| ||||||||||||||||| ||||| |||||||||||||    
T  37119318 tgagtttaactcagttgatatgaacaatgcataatatatgca 37119277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 40967431 - 40967390
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    |||||||||||||||||||| | ||||| |||||||||||||    
T  40967431 tgagcttaactcagttgataaggacaatgcataatatatgca 40967390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 5168642 - 5168598
Alignment:
Q  89 tcatgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    ||||||||||||||||||||||| | | ||| |||||||||||||    
T  5168642 tcatgagcttaactcagttgatagggataatgcataatatatgca 5168598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 12599923 - 12599879
Alignment:
Q  94 agcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||||||  |||| ||||||||||||||||||| ||||    
T  12599923 agcttaactcagttagtatggacaatacataatatatgcaaggtc 12599879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 40795378 - 40795424
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||||||||| |||| ||||||||||||||||||| ||||    
T  40795378 tgagcttaactcagttggtatgaacaatacataatatatgcaaggtc 40795424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 17062399 - 17062358
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  17062399 tgagcttaactcagttgatatagacaatacataatatatgca 17062358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 17585959 - 17586000
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  17585959 tgagcttaactcagttgatatagacaatacataatatatgca 17586000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 1877728 - 1877676
Alignment:
Q  86 tactcatgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||| |||||||||||||||||||||  ||||| ||||||||||||| ||||    
T  1877728 tactcgtgagcttaactcagttgatatagacaatgcataatatatgcaaggtc 1877676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 2554272 - 2554226
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    |||||||| ||||||||||||| ||||||||||| ||||||| ||||    
T  2554272 tgagcttagctcagttgatatggacaatacataaaatatgcaaggtc 2554226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 7987790 - 7987732
Alignment:
Q  91 atgagcttaactcagttgatatgcacaatacataatatatgcatggt-cgggttcaaat 148  Q
    |||||||||||||| ||| || | ||||||||||||||||||| ||| |||||||||||    
T  7987790 atgagcttaactcaattgctaaggacaatacataatatatgcaaggtccgggttcaaat 7987732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 17898080 - 17898126
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||||||||| |||| |||| |||||||||||||| ||||    
T  17898080 tgagcttaactcagttggtatggacaaaacataatatatgcaaggtc 17898126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 24195254 - 24195296
Alignment:
Q  96 cttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||    
T  24195254 cttagctcagttgatatgaacaatacataatatatgcaaggtc 24195296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 27718954 - 27718908
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    |||||||| ||||||||||||| ||||| ||||||||||||| ||||    
T  27718954 tgagcttagctcagttgatatggacaatgcataatatatgcaaggtc 27718908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 32421570 - 32421616
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||||||||| |||| |||||| |||||||||||| ||||    
T  32421570 tgagcttaactcagttggtatggacaatatataatatatgcaaggtc 32421616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 39433411 - 39433457
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    |||||||| ||||||||||||| ||||||||||| ||||||| ||||    
T  39433411 tgagcttagctcagttgatatgaacaatacataaaatatgcaaggtc 39433457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 10982727 - 10982768
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    ||||||||||||||||| |||| |||||| ||||||||||||    
T  10982727 tgagcttaactcagttggtatggacaatatataatatatgca 10982768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 13357501 - 13357460
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  13357501 tgagcttaactcagttggtatggacaatgcataatatatgca 13357460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 29546895 - 29546940
Alignment:
Q  93 gagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||||||||||| | |||||| |||||||||||| ||||    
T  29546895 gagcttaactcagttgatagggacaatagataatatatgcaaggtc 29546940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 13496117 - 13496163
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    |||||||||||||||||||||| ||||| ||||||||||||| ||||    
T  13496117 tgagcttaactcagttgatatgaacaatgcataatatatgcaaggtc 13496163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 24212599 - 24212560
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatg 131  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  24212599 tgagcttaactcagttgatatggacaatgcataatatatg 24212560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 361755 - 361796
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  361755 tgagcttaactcagttggtatggacaatgcataatatatgca 361796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 6799635 - 6799680
Alignment:
Q  86 tactcatgagcttaactcagttgatatgcacaatacataatatatg 131  Q
    ||||| |||||||||||||||| | ||| |||||||||||||||||    
T  6799635 tactcgtgagcttaactcagttaacatggacaatacataatatatg 6799680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 12904377 - 12904336
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    |||||||| ||||||||||||| ||||| |||||||||||||    
T  12904377 tgagcttacctcagttgatatgaacaatgcataatatatgca 12904336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 28951400 - 28951441
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  28951400 tgagcttaactcagttggtatgaacaatgcataatatatgca 28951441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 2445302 - 2445338
Alignment:
Q  94 agcttaactcagttgatatgcacaatacataatatat 130  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  2445302 agcttaactcagttgatatgaacaatgcataatatat 2445338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 3373436 - 3373400
Alignment:
Q  97 ttaactcagttgatatgcacaatacataatatatgca 133  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  3373436 ttaactcagttgatatggacaatgcataatatatgca 3373400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 18256884 - 18256940
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggt-cgggttcaaa 147  Q
    |||||||| ||||||||||| | ||||| ||||||||||||| ||| ||||||||||    
T  18256884 tgagcttagctcagttgataaggacaatgcataatatatgcaaggtccgggttcaaa 18256940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 13864345 - 13864391
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||||||||| |||| ||||||||||||||||||| ||||    
T  13864345 tgagcttaactcagttggtatgaacaatacataatatatgcaaggtc 13864391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 20721053 - 20721097
Alignment:
Q  94 agcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||||||| |||| ||||||||||||||||||| ||||    
T  20721053 agcttaactcagttggtatggacaatacataatatatgcaaggtc 20721097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 31159428 - 31159471
Alignment:
Q  90 catgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    ||||||||||||||||||||||   |||||||||||||||||||    
T  31159428 catgagcttaactcagttgataaagacaatacataatatatgca 31159471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 8545049 - 8545003
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    |||||||||||||||||||| | ||||| ||||||||||||| ||||    
T  8545049 tgagcttaactcagttgataaggacaatgcataatatatgcaaggtc 8545003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 13796331 - 13796377
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||||||| |||||| ||||| ||||||||||||| ||||    
T  13796331 tgagcttaactcagtcgatatgaacaatgcataatatatgcaaggtc 13796377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 18589927 - 18589881
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  18589927 tgagcttaactcagttggtatgaacaatgcataatatatgcaaggtc 18589881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 41650999 - 41650953
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  41650999 tgagcttaactcagttggtatggacaatgcataatatatgcaaggtc 41650953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 5001556 - 5001597
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    |||||||||||| ||||||| | |||||||||||||||||||    
T  5001556 tgagcttaactcggttgataaggacaatacataatatatgca 5001597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 11720895 - 11720944
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtcggg 141  Q
    ||||||||||||||||| || | ||||| ||||||||||||| |||||||    
T  11720895 tgagcttaactcagttggtagggacaatgcataatatatgcaaggtcggg 11720944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 16076432 - 16076473
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    |||||||||||||| ||||||| ||||| |||||||||||||    
T  16076432 tgagcttaactcagctgatatggacaatgcataatatatgca 16076473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 17046335 - 17046376
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  17046335 tgagcttaactcagttggtatggacaatgcataatatatgca 17046376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 20927640 - 20927681
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    |||||||| |||||||| |||| |||||||||||||||||||    
T  20927640 tgagcttagctcagttggtatggacaatacataatatatgca 20927681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 33369473 - 33369432
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    ||||||||||||||||| |||| |||||||||||| ||||||    
T  33369473 tgagcttaactcagttggtatgaacaatacataatgtatgca 33369432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 33645749 - 33645700
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtcggg 141  Q
    ||||||||||||||||| |||| |||||  |||||||||||| |||||||    
T  33645749 tgagcttaactcagttggtatggacaatgtataatatatgcaaggtcggg 33645700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 39610401 - 39610360
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    |||||||| ||||||||||||| ||||| |||||||||||||    
T  39610401 tgagcttagctcagttgatatggacaatgcataatatatgca 39610360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 7371608 - 7371562
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    |||||||||||||||||||| | ||||||||||||||||||| ||||    
T  7371608 tgagcttaactcagttgataaggacaatacataatatatgcaaggtc 7371562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 27537745 - 27537797
Alignment:
Q  88 ctcatgagcttaactcagttgatatgcacaatacataatatatgcatggtcgg 140  Q
    ||||||||||||||||| ||| |||| ||||| ||||||||||||| ||||||    
T  27537745 ctcatgagcttaactcaattggtatggacaatgcataatatatgcaaggtcgg 27537797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 6459984 - 6459945
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatg 131  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  6459984 tgagcttaactcagttgatatggacaatgcataatatatg 6459945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 132
Target Start/End: Original strand, 9196211 - 9196254
Alignment:
Q  89 tcatgagcttaactcagttgatatgcacaatacataatatatgc 132  Q
    |||||||||||||| |||||||||| ||||| ||||||||||||    
T  9196211 tcatgagcttaacttagttgatatggacaatgcataatatatgc 9196254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 24837533 - 24837494
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatg 131  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  24837533 tgagcttaacttagttgatatgaacaatacataatatatg 24837494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 11949827 - 11949777
Alignment:
Q  88 ctcatgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    |||||||||||| |||||||| |||| ||||| ||||||||||||| ||||    
T  11949827 ctcatgagcttagctcagttggtatggacaatgcataatatatgcaaggtc 11949777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 19124682 - 19124636
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||||||||||||   ||||||||||||||||||| ||||    
T  19124682 tgagcttaactcagttgataaagacaatacataatatatgcaaggtc 19124636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 24885860 - 24885814
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| ||||    
T  24885860 tgagcttaactcagttggtatggacaatacataaaatatgcaaggtc 24885814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 40071028 - 40070982
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  40071028 tgagcttaactcagttggtatgaacaatgcataatatatgcaaggtc 40070982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 43034402 - 43034356
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  43034402 tgagcttaactcagttggtatggacaatgcataatatatgcaaggtc 43034356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 2422738 - 2422701
Alignment:
Q  94 agcttaactcagttgatatgcacaatacataatatatg 131  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  2422738 agcttaactcagttgatatggacaatatataatatatg 2422701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 35021527 - 35021486
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    |||||||| ||||||||||||| ||||||||||| |||||||    
T  35021527 tgagcttagctcagttgatatggacaatacataaaatatgca 35021486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 40847127 - 40847086
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    ||||||||||||||||||||   |||||||||||||||||||    
T  40847127 tgagcttaactcagttgatagagacaatacataatatatgca 40847086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 47007362 - 47007321
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    ||||||||||||||||| || | |||||||||||||||||||    
T  47007362 tgagcttaactcagttgttagggacaatacataatatatgca 47007321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 39146644 - 39146680
Alignment:
Q  93 gagcttaactcagttgatatgcacaatacataatata 129  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  39146644 gagcttaactcagttgatatggacaatgcataatata 39146680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 429238 - 429197
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  429238 tgagcttaactcagttgatatggataatacataatatatgca 429197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 8883554 - 8883611
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtcgggttcaaatc 149  Q
    ||||||||||||||||| |||| ||||| |||||||| |||| |||||||||| ||||    
T  8883554 tgagcttaactcagttggtatggacaatgcataatatgtgcaaggtcgggttcgaatc 8883611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 132
Target Start/End: Original strand, 39043753 - 39043796
Alignment:
Q  89 tcatgagcttaactcagttgatatgcacaatacataatatatgc 132  Q
    |||||||||||||||||||| |||| ||||| ||||||||||||    
T  39043753 tcatgagcttaactcagttggtatggacaatgcataatatatgc 39043796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 30793106 - 30793060
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||||||||| |||| ||||| |||| |||||||||||||    
T  30793106 tgagcttaactcagttggtatggacaatgcatagtatatgcatggtc 30793060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 47342498 - 47342448
Alignment:
Q  88 ctcatgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||||||||||||| | || ||||| ||||||||||||| ||||    
T  47342498 ctcatgagcttaactcagttggtttggacaatgcataatatatgcaaggtc 47342448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 3672612 - 3672571
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    |||| ||| ||||||||||||| |||||||||||||||||||    
T  3672612 tgagtttagctcagttgatatggacaatacataatatatgca 3672571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 5317348 - 5317307
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    |||||||||||||||||||||| | ||| |||||||||||||    
T  5317348 tgagcttaactcagttgatatggaaaatgcataatatatgca 5317307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 22991451 - 22991410
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  22991451 tgagcttaactcagttggtatggacaatgcataatatatgca 22991410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 23413102 - 23413057
Alignment:
Q  96 cttaactcagttgatatgcacaatacataatatatgcatggtcggg 141  Q
    ||||||||||||| |||| ||||| ||||||||||||| |||||||    
T  23413102 cttaactcagttggtatggacaatgcataatatatgcaaggtcggg 23413057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 28200445 - 28200404
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    ||||||||||||||||| || | |||||||||||||||||||    
T  28200445 tgagcttaactcagttggtaggaacaatacataatatatgca 28200404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 32315224 - 32315265
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    |||||||||||||||||||| | ||| |||||||||||||||    
T  32315224 tgagcttaactcagttgataaggacattacataatatatgca 32315265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 32855517 - 32855562
Alignment:
Q  88 ctcatgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    ||||||| |||||||||||||||||| | ||| |||||||||||||    
T  32855517 ctcatgaacttaactcagttgatatgaataatgcataatatatgca 32855562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 35142209 - 35142168
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    |||||||| ||||||||||||| ||||| |||||||||||||    
T  35142209 tgagcttagctcagttgatatggacaatgcataatatatgca 35142168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 48065203 - 48065252
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtcggg 141  Q
    ||||||||||||| ||| |||| ||||| ||||||||||||| |||||||    
T  48065203 tgagcttaactcaattggtatggacaattcataatatatgcaaggtcggg 48065252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 15015241 - 15015281
Alignment:
Q  91 atgagcttaactcagttgatatgcacaatacataatatatg 131  Q
    ||||||||||||||||||||| | ||||| |||||||||||    
T  15015241 atgagcttaactcagttgataagaacaatgcataatatatg 15015281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 47960897 - 47960937
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgc 132  Q
    ||||||||||||| |||||| | ||||||||||||||||||    
T  47960897 tgagcttaactcaattgataaggacaatacataatatatgc 47960937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 5941354 - 5941309
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggt 137  Q
    ||||||||||||||||| |||| ||||| |||||||||||||||||    
T  5941354 tgagcttaactcagttggtatgaacaatgcataatatatgcatggt 5941309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 42784957 - 42784994
Alignment:
Q  91 atgagcttaactcagttgatatgcacaatacataatat 128  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  42784957 atgagcttaactcagttgatatggacaatacataatat 42784994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 33404229 - 33404268
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatg 131  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  33404229 tgagcttagctcagttgatatggacaatacataatatatg 33404268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 7824808 - 7824854
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    |||| ||||||||||||||||  ||||||||||||||||||| ||||    
T  7824808 tgagtttaactcagttgatatagacaatacataatatatgcaaggtc 7824854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 10843841 - 10843795
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||||||||| |||| | ||||||||||||||||| ||||    
T  10843841 tgagcttaactcagttggtatgaataatacataatatatgcaaggtc 10843795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 19468452 - 19468498
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  19468452 tgagcttaactcagttggtatggacaatgcataatatatgcaaggtc 19468498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 38131019 - 38130973
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  38131019 tgagcttaactcagttggtatggacaatgcataatatatgcaaggtc 38130973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 1111896 - 1111855
Alignment:
Q  97 ttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||||||| | ||||||||||||||||||| ||||    
T  1111896 ttaactcagttgatagggacaatacataatatatgcaaggtc 1111855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 8942018 - 8942059
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  8942018 tgagcttaactcagttggtatgaacaatgcataatatatgca 8942059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 29631183 - 29631228
Alignment:
Q  88 ctcatgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    |||||||||||| |||||||| |||| ||||| |||||||||||||    
T  29631183 ctcatgagcttagctcagttggtatggacaatgcataatatatgca 29631228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 49975864 - 49975819
Alignment:
Q  93 gagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    |||||||||||||||| |||| ||||| ||||||||||||| ||||    
T  49975864 gagcttaactcagttgttatggacaatgcataatatatgcaaggtc 49975819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 51882260 - 51882219
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgca 133  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  51882260 tgagcttaactcagttggtatggacaatgcataatatatgca 51882219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 39100478 - 39100438
Alignment:
Q  90 catgagcttaactcagttgatatgcacaatacataatatat 130  Q
    |||||||||||||||||||||| | ||||| ||||||||||    
T  39100478 catgagcttaactcagttgataagaacaatgcataatatat 39100438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 45413 - 45459
Alignment:
Q  92 tgagcttaactcagttgatatgcacaatacataatatatgcatggtc 138  Q
    ||||||||||||||||| | || ||||||||||||||||||| ||||    
T  45413 tgagcttaactcagttggtttggacaatacataatatatgcaaggtc 45459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 297 times since January 2019
Visitors: 2564