View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0302_1D_high_1 (Length: 895)
Name: NF0302_1D_high_1
Description: NF0302_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0302_1D_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 609; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 235 - 878
Target Start/End: Original strand, 30885518 - 30886168
Alignment:
| Q |
235 |
gggctcaatacatgtgtgctcttttactgtcatggtgcagcatctattggctgctgctgatctctataatcttgacaggctaaaaatgttatgtgaatca |
334 |
Q |
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| T |
30885518 |
gggctcaatacatgtgtgctcttttactgtcatggtgcagcatctattggctgctgctgatctctataatcttgacaggctaaaaatgttatgtgaatca |
30885617 |
T |
|
| Q |
335 |
aaattgtgcgaagaaatcaatactgagaccgtagccacaacacttgccctggctgagcaacaccattgtccacagctcaagacgatctgtttgaaattta |
434 |
Q |
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| T |
30885618 |
aaattgtgtgaagaaatcaatactgagaccgtagccacgacacttgccctggctgagcaacaccattgtccacagctcaagacgatctgtttgaaattta |
30885717 |
T |
|
| Q |
435 |
ttgcaaatccgacaaatttgggaggtgcgtgctattgcatgttattgtttgtacaatgtttctgatgatactgcaggggtttgatttgatagtataatgc |
534 |
Q |
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| T |
30885718 |
ttgcaaatccgacaaatttgggaggtgcgtgctattgcatgttattgtttgtacaatgtttctgatgatactgcaggggtttgatttgatagtataatgc |
30885817 |
T |
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| Q |
535 |
agccttcatttttca-------ttaataattaatatctatatttacattcaaaattaattatgacctgagatccttttgaatctcattcattccttctat |
627 |
Q |
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| T |
30885818 |
aaccttcatttttcattattcattaataattaatatctatatttacattcaaaattaattatgacctgagatccttttgaatctcattcattccttctat |
30885917 |
T |
|
| Q |
628 |
aagcgtgcttttagacttcatttttgtttccgttaatctcttggaaggatctattcccctaagttataaagttacagaggaaggaatgatggaggtaagg |
727 |
Q |
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| T |
30885918 |
aagcgtgcttttagacttcatttttgtttccgttaatctcttggaaggatctattcccctaagttataaagttacagaggaaggaatgatggaggtaagg |
30886017 |
T |
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| Q |
728 |
gaactatctaagtaagtttaagtagatattttgtgaaaagaatgtgattatctatgtgtttctacatacacagacattcatgtttcaatattttgcatga |
827 |
Q |
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| T |
30886018 |
gaactatctaagtaagtttaagtagatattttgtgaaaagaatgtgattatctatgtgtttctacatacagagacattcatgtttcaatattttgcatga |
30886117 |
T |
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| Q |
828 |
actgttttaggccttgtttatgagcacaaactaacatttgtcgctgatgtc |
878 |
Q |
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| T |
30886118 |
actgttttaggccttgtttatgagcacaaactaacatttgtcgctgatgtc |
30886168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 24 - 236
Target Start/End: Original strand, 30884996 - 30885206
Alignment:
| Q |
24 |
accaatttatagaagtaccgtgaatggtaccccggagacaattcacgatttctttactgagtgcaatgaattatgtgactatgatatgaacacataaata |
123 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30884996 |
accaattcacagaagtaccgtgaatggtaccccggagacaattcacgatttctctaccgagtgcaatgaattatgtgactatgatatgaacacataaata |
30885095 |
T |
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| Q |
124 |
atctgtttgcttttgtttgtgaagcagtcagttgaaactgggtatatatattataaaaataattgtttgtggtagagtaaaatagggtgagttgtctcta |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30885096 |
atctgtttgcttttgtttgtgaagcagtcagttgaaactggg--tgtatattataaaaataattgtttgtggtagagtaaaatagggtgagttgtctcta |
30885193 |
T |
|
| Q |
224 |
tcaaaataaacgg |
236 |
Q |
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| T |
30885194 |
tcaaaataaacgg |
30885206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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